mRNA_E_fasciculatus_S2_contig8264.16411.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: UBA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B9_9PHAE) HSP 1 Score: 165 bits (418), Expect = 2.610e-45 Identity = 84/95 (88.42%), Postives = 86/95 (90.53%), Query Frame = 1
Query: 25 GSKRLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPTG 309
GSKRLPPAPRGAAYCFLPLPV+TGLPVHVNG RDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKA+LGGG AYEALWPTG
Sbjct: 41 GSKRLPPAPRGAAYCFLPLPVLTGLPVHVNG--------RDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKASLGGGAAYEALWPTG 127
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA) HSP 1 Score: 132 bits (331), Expect = 1.450e-33 Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 1
Query: 52 RGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWP 303
RG AYCFLPLPV TGLPVHVNGYFELSSNRRDIW+G DM GDG +RA WN ALVEE+AASCY R+L+ + LG AY+ LWP
Sbjct: 375 RGRAYCFLPLPVFTGLPVHVNGYFELSSNRRDIWTGDDMAGDGAVRAQWNAALVEEIAASCYARLLLGVRTELGDRAAYDTLWP 458
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CTG0_9EUKA) HSP 1 Score: 115 bits (287), Expect = 3.260e-29 Identity = 54/83 (65.06%), Postives = 64/83 (77.11%), Query Frame = 1
Query: 55 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWP 303
G+A+CFLPLPV TGLPVHVNGYFELS+NRRDIW GSDM GDGE+R+ WN+ L+E++ AS Y +L A LG Y ALWP
Sbjct: 102 GSAFCFLPLPVRTGLPVHVNGYFELSANRRDIWWGSDMTGDGEMRSKWNRLLIEDVVASAYAHILYEASKILGYQKDYFALWP 184
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVU2_9STRA) HSP 1 Score: 119 bits (298), Expect = 4.110e-29 Identity = 57/90 (63.33%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 34 RLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWP 303
R PP P G AYCFLPLPV TGLPVHVNGYFELSSNRRD+W G DM GDG RA WN AL+ ++AA CY+R++ K + G YE L P
Sbjct: 7 RPPPPPIGKAYCFLPLPVETGLPVHVNGYFELSSNRRDVWWGDDMAGDGRARAEWNLALIRDIAAVCYSRMVEKTKGKMREGRVYEELMP 96
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: Ubiquitin-associated/translation (elongation factor EF1B n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1E4_9STRA) HSP 1 Score: 119 bits (298), Expect = 4.120e-29 Identity = 55/83 (66.27%), Postives = 65/83 (78.31%), Query Frame = 1
Query: 55 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWP 303
G AYCFLPLPV TGLPVHVNG+FELSSNRRDIW G DMVG+G+LRA WN+AL+ ++A CY+R L A G G Y++LWP
Sbjct: 418 GLAYCFLPLPVATGLPVHVNGFFELSSNRRDIWWGDDMVGEGQLRAEWNRALLCDVAVPCYSRFLSLAAERCGAGALYDSLWP 500
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: RING-type (domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K3C6_PHYPA) HSP 1 Score: 118 bits (295), Expect = 1.040e-28 Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1
Query: 55 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPTG 309
G A+CFLPLPV GLPVHVNGYFELSSNRRDIW G DM G G+LRA+WN+ L+E++AA Y R+LV A LG + ALWPTG
Sbjct: 1769 GRAFCFLPLPVKIGLPVHVNGYFELSSNRRDIWYGDDMAGGGKLRADWNRCLLEDVAAPAYARLLVEAARELGATAMFHALWPTG 1853
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: sacsin-like (n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C28F7) HSP 1 Score: 114 bits (285), Expect = 2.310e-27 Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 1
Query: 31 KRLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPT 306
+R P + G A+CFLPLPVV GLP+HVNGYFELS+NRRDIW G DMVG G+LR+ WN L+++ AA Y R+L A LG +Y +LWPT
Sbjct: 1332 ERGPVSVEGRAFCFLPLPVVVGLPIHVNGYFELSANRRDIWYGGDMVGGGKLRSQWNSFLLQDAAAPAYARLLHRASRELGPSASYSSLWPT 1423
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: RING-type (domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S6M7_SELML) HSP 1 Score: 114 bits (285), Expect = 2.340e-27 Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 1
Query: 31 KRLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPT 306
+R P + G A+CFLPLPVV GLP+HVNGYFELS+NRRDIW G DMVG G+LR+ WN L+++ AA Y R+L A LG +Y +LWPT
Sbjct: 1703 ERGPVSVEGRAFCFLPLPVVVGLPIHVNGYFELSANRRDIWYGGDMVGGGKLRSQWNSFLLQDAAAPAYARLLHRASRELGPSASYSSLWPT 1794
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZCP2_9EUKA) HSP 1 Score: 107 bits (268), Expect = 2.950e-27 Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1
Query: 40 PPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWP 303
P G A+CFLPLPV+TGLPVHVNG+FELS+NRRDIW GSDM GDGE+R+ WN+ L+ ++ A+ Y +L+ + +G Y +LWP
Sbjct: 73 PTIANGTAFCFLPLPVLTGLPVHVNGFFELSANRRDIWWGSDMTGDGEMRSRWNRLLLGDVVAAAYAHLLLISSKEMGFTEQYLSLWP 160
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XKS3_9CHLO) HSP 1 Score: 106 bits (264), Expect = 3.150e-27 Identity = 54/87 (62.07%), Postives = 62/87 (71.26%), Query Frame = 1
Query: 46 APRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPT 306
A G A+CFLPLPV TGLPVHVN YFELSSNRRDIW G DM G G R+ WN AL+E+ A Y +L AA AALG ++ AL+PT
Sbjct: 38 AVEGRAFCFLPLPVRTGLPVHVNAYFELSSNRRDIWFGGDMSGGGAARSEWNVALLEDAVAPAYAALLAAAAAALGPSPSFYALFPT 124 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8264.16411.1 >prot_E_fasciculatus_S2_contig8264.16411.1 ID=prot_E_fasciculatus_S2_contig8264.16411.1|Name=mRNA_E_fasciculatus_S2_contig8264.16411.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=103bp GGGEGRGGGSKRLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIback to top mRNA from alignment at E_fasciculatus_S2_contig8264:4162..5287- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8264.16411.1 ID=mRNA_E_fasciculatus_S2_contig8264.16411.1|Name=mRNA_E_fasciculatus_S2_contig8264.16411.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1126bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8264:4162..5287- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8264:4162..5287- >mRNA_E_fasciculatus_S2_contig8264.16411.1 ID=mRNA_E_fasciculatus_S2_contig8264.16411.1|Name=mRNA_E_fasciculatus_S2_contig8264.16411.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=309bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8264:4162..5287- (Ectocarpus fasciculatus EfasUO2)back to top |