mRNA_E_fasciculatus_S2_contig8264.16411.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8264.16411.1
Unique NamemRNA_E_fasciculatus_S2_contig8264.16411.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: UBA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B9_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.610e-45
Identity = 84/95 (88.42%), Postives = 86/95 (90.53%), Query Frame = 1
Query:   25 GSKRLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPTG 309
            GSKRLPPAPRGAAYCFLPLPV+TGLPVHVNG        RDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKA+LGGG AYEALWPTG
Sbjct:   41 GSKRLPPAPRGAAYCFLPLPVLTGLPVHVNG--------RDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKASLGGGAAYEALWPTG 127          
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.450e-33
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 1
Query:   52 RGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWP 303
            RG AYCFLPLPV TGLPVHVNGYFELSSNRRDIW+G DM GDG +RA WN ALVEE+AASCY R+L+  +  LG   AY+ LWP
Sbjct:  375 RGRAYCFLPLPVFTGLPVHVNGYFELSSNRRDIWTGDDMAGDGAVRAQWNAALVEEIAASCYARLLLGVRTELGDRAAYDTLWP 458          
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CTG0_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 3.260e-29
Identity = 54/83 (65.06%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   55 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWP 303
            G+A+CFLPLPV TGLPVHVNGYFELS+NRRDIW GSDM GDGE+R+ WN+ L+E++ AS Y  +L  A   LG    Y ALWP
Sbjct:  102 GSAFCFLPLPVRTGLPVHVNGYFELSANRRDIWWGSDMTGDGEMRSKWNRLLIEDVVASAYAHILYEASKILGYQKDYFALWP 184          
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVU2_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.110e-29
Identity = 57/90 (63.33%), Postives = 65/90 (72.22%), Query Frame = 1
Query:   34 RLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWP 303
            R PP P G AYCFLPLPV TGLPVHVNGYFELSSNRRD+W G DM GDG  RA WN AL+ ++AA CY+R++   K  +  G  YE L P
Sbjct:    7 RPPPPPIGKAYCFLPLPVETGLPVHVNGYFELSSNRRDVWWGDDMAGDGRARAEWNLALIRDIAAVCYSRMVEKTKGKMREGRVYEELMP 96          
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: Ubiquitin-associated/translation (elongation factor EF1B n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1E4_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.120e-29
Identity = 55/83 (66.27%), Postives = 65/83 (78.31%), Query Frame = 1
Query:   55 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWP 303
            G AYCFLPLPV TGLPVHVNG+FELSSNRRDIW G DMVG+G+LRA WN+AL+ ++A  CY+R L  A    G G  Y++LWP
Sbjct:  418 GLAYCFLPLPVATGLPVHVNGFFELSSNRRDIWWGDDMVGEGQLRAEWNRALLCDVAVPCYSRFLSLAAERCGAGALYDSLWP 500          
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: RING-type (domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K3C6_PHYPA)

HSP 1 Score: 118 bits (295), Expect = 1.040e-28
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1
Query:   55 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPTG 309
            G A+CFLPLPV  GLPVHVNGYFELSSNRRDIW G DM G G+LRA+WN+ L+E++AA  Y R+LV A   LG    + ALWPTG
Sbjct: 1769 GRAFCFLPLPVKIGLPVHVNGYFELSSNRRDIWYGDDMAGGGKLRADWNRCLLEDVAAPAYARLLVEAARELGATAMFHALWPTG 1853          
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: sacsin-like (n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C28F7)

HSP 1 Score: 114 bits (285), Expect = 2.310e-27
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   31 KRLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPT 306
            +R P +  G A+CFLPLPVV GLP+HVNGYFELS+NRRDIW G DMVG G+LR+ WN  L+++ AA  Y R+L  A   LG   +Y +LWPT
Sbjct: 1332 ERGPVSVEGRAFCFLPLPVVVGLPIHVNGYFELSANRRDIWYGGDMVGGGKLRSQWNSFLLQDAAAPAYARLLHRASRELGPSASYSSLWPT 1423          
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: RING-type (domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S6M7_SELML)

HSP 1 Score: 114 bits (285), Expect = 2.340e-27
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   31 KRLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPT 306
            +R P +  G A+CFLPLPVV GLP+HVNGYFELS+NRRDIW G DMVG G+LR+ WN  L+++ AA  Y R+L  A   LG   +Y +LWPT
Sbjct: 1703 ERGPVSVEGRAFCFLPLPVVVGLPIHVNGYFELSANRRDIWYGGDMVGGGKLRSQWNSFLLQDAAAPAYARLLHRASRELGPSASYSSLWPT 1794          
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZCP2_9EUKA)

HSP 1 Score: 107 bits (268), Expect = 2.950e-27
Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   40 PPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWP 303
            P    G A+CFLPLPV+TGLPVHVNG+FELS+NRRDIW GSDM GDGE+R+ WN+ L+ ++ A+ Y  +L+ +   +G    Y +LWP
Sbjct:   73 PTIANGTAFCFLPLPVLTGLPVHVNGFFELSANRRDIWWGSDMTGDGEMRSRWNRLLLGDVVAAAYAHLLLISSKEMGFTEQYLSLWP 160          
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XKS3_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 3.150e-27
Identity = 54/87 (62.07%), Postives = 62/87 (71.26%), Query Frame = 1
Query:   46 APRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPT 306
            A  G A+CFLPLPV TGLPVHVN YFELSSNRRDIW G DM G G  R+ WN AL+E+  A  Y  +L AA AALG   ++ AL+PT
Sbjct:   38 AVEGRAFCFLPLPVRTGLPVHVNAYFELSSNRRDIWFGGDMSGGGAARSEWNVALLEDAVAPAYAALLAAAAAALGPSPSFYALFPT 124          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8264.16411.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UBA2.610e-4588.42domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RING-type1.450e-3372.62domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical3.260e-2965.06protein (Fragment) n=1 Tax=Amorphochlora amoebifor... [more]
Hypothetical4.110e-2963.33protein (Fragment) n=1 Tax=Triparma pacifica TaxID... [more]
Ubiquitin-associated/translation4.120e-2966.27elongation factor EF1B n=4 Tax=Monodopsidaceae Tax... [more]
RING-type1.040e-2865.88domain-containing protein n=3 Tax=Physcomitrium pa... [more]
sacsin-like2.310e-2758.70n=1 Tax=Selaginella moellendorffii TaxID=88036 Rep... [more]
RING-type2.340e-2758.70domain-containing protein n=3 Tax=Selaginella moel... [more]
Hypothetical2.950e-2755.68protein (Fragment) n=1 Tax=Lotharella globosa TaxI... [more]
Hypothetical3.150e-2762.07protein (Fragment) n=1 Tax=Mantoniella antarctica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8264contigE_fasciculatus_S2_contig8264:4162..5287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score119.4
Seed ortholog evalue9.9e-25
Seed eggNOG ortholog3218.PP1S78_164V6.1
Model size309
KEGG koko:K17592
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
Exons3
EggNOG free text desc.negative regulation of inclusion body assembly
EggNOG OGs28IDA@1,2QQPY@2759,37MBW@33090,3GEHS@35493
Cds size309
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842486.5417287-CDS-E_fasciculatus_S2_contig8264:4161..43301696842486.5417287-CDS-E_fasciculatus_S2_contig8264:4161..4330Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8264 4162..4330 -
1696842486.560693-CDS-E_fasciculatus_S2_contig8264:4711..47351696842486.560693-CDS-E_fasciculatus_S2_contig8264:4711..4735Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8264 4712..4735 -
1696842486.575389-CDS-E_fasciculatus_S2_contig8264:5171..52871696842486.575389-CDS-E_fasciculatus_S2_contig8264:5171..5287Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8264 5172..5287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8264.16411.1prot_E_fasciculatus_S2_contig8264.16411.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8264 4162..5287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8264.16411.1

>prot_E_fasciculatus_S2_contig8264.16411.1 ID=prot_E_fasciculatus_S2_contig8264.16411.1|Name=mRNA_E_fasciculatus_S2_contig8264.16411.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=103bp
GGGEGRGGGSKRLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDI
WSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALW
PTG
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mRNA from alignment at E_fasciculatus_S2_contig8264:4162..5287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8264.16411.1 ID=mRNA_E_fasciculatus_S2_contig8264.16411.1|Name=mRNA_E_fasciculatus_S2_contig8264.16411.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1126bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8264:4162..5287- (Ectocarpus fasciculatus EfasUO2)
GGGGGGGGCGAGGGGAGGGGGGGGGGCTCAAAGCGGCTGCCGCCTGCGCC GCGGGGCGCCGCGTACTGCTTTCTGCCGCTGCCTGTGGTGACCGGGTTGC CGGTGCATGTTAACGGGTGCGGCCCTTAAGACCGTACTAGGCGGTGTTGT TGTCCTCCTTTGCGCCGACTGTTGCTGTTGATCATGCTAGTAGGCGGTGT TGTCCTTCTTTCCGTCGACTGTTGGTTGTTGATACCGCTCTCGATTGTTA GTTGACATTTTTCAAGTAACCTTGTTTTTCCTGTCGCTAAGAAGAGCGTC CTCTTCTCTCGTCGCCGCGTACTGTTTTCTGCCTCTCAACGTGTGTGGCC CTTTAAAAACGACGACCCTACCAGGCGGTGTTGTCCTCCTCTCCGTCGGC TGTTGTCGTTGATCTCGATCTCGCTTGTCGGTAGGTTTTTTGTTTCGCTG TCACTAGAGCGCCCTCTCCTTGGTTTTGACTCCCGCCCCTTCGTCCGTCC ATCCCCACGTTTTTGCCCTGTTGTTGGTTGTGCACTTGGCGGCCTCCACC AGCTACTTCGAGCTGTCTTCGAACCGGTGAGGCCGACTTTGGGGAACTGC TGTTGATTGACGGCCGATGTTTAGTTCTTGTAGTAAAAGGCGTTTCCCGG AAGCATGAAACCGCGCTGTGTGTTAGCGGACTACCCAACGGTCATTTCCA CCGTCCTGTCGAGACTCTCAACAAGAGGGCAATTTGCTGCCAGGCGGATA GCAAAGCGCGCTCGTTTTTTGTCGGCCATGCGTAAGCACTGCTCTACGTG CCCGCTCGAAACCCCGACAGGAACATCGTAGCACGCGCGCGTTGCCATTT TTCGCTCACTCGCTAGTCGACTGCTGTGCATATTCTTTTTATTCTTGTTG TCCCTGCCGTGTTGGACCCCGCACTGGACTAATAACGGTGGTTGTCTGTG TACGCAGGCGTGACATCTGGAGCGGGTCGGACATGGTGGGAGACGGCGAG CTCCGCGCGAACTGGAACAAGGCCCTCGTGGAGGAGCTCGCAGCGAGCTG CTACACCCGCGTCCTGGTCGCGGCGAAGGCCGCCCTCGGGGGCGGGGGGG CCTACGAGGCCCTCTGGCCAACGGGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8264:4162..5287-

>mRNA_E_fasciculatus_S2_contig8264.16411.1 ID=mRNA_E_fasciculatus_S2_contig8264.16411.1|Name=mRNA_E_fasciculatus_S2_contig8264.16411.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=309bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8264:4162..5287- (Ectocarpus fasciculatus EfasUO2)
GGGGGGGGCGAGGGGAGGGGGGGGGGCTCAAAGCGGCTGCCGCCTGCGCC
GCGGGGCGCCGCGTACTGCTTTCTGCCGCTGCCTGTGGTGACCGGGTTGC
CGGTGCATGTTAACGGCTACTTCGAGCTGTCTTCGAACCGGCGTGACATC
TGGAGCGGGTCGGACATGGTGGGAGACGGCGAGCTCCGCGCGAACTGGAA
CAAGGCCCTCGTGGAGGAGCTCGCAGCGAGCTGCTACACCCGCGTCCTGG
TCGCGGCGAAGGCCGCCCTCGGGGGCGGGGGGGCCTACGAGGCCCTCTGG
CCAACGGGA
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