prot_E_fasciculatus_S2_contig8214.16370.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig8214.16370.1
Unique Name	prot_E_fasciculatus_S2_contig8214.16370.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	175

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs. uniprot
Match: D7G466_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G466_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 2.350e-120
Identity = 167/173 (96.53%), Postives = 171/173 (98.84%), Query Frame = 0

Query:    2 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNRP 174
            VYVGNLSWECQWQDLKDHMRAAG+VKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGP G+KR+GQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCG VQFVEIPEDAQGRSKGYATVRFGSE+DAADAINQLDGTDLDGRRIGVREDNRP
Sbjct:  264 VYVGNLSWECQWQDLKDHMRAAGSVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPIGSKRIGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGRVQFVEIPEDAQGRSKGYATVRFGSEQDAADAINQLDGTDLDGRRIGVREDNRP 436

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BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs. uniprot
Match: B8CBN8_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBN8_THAPS)

HSP 1 Score: 184 bits (467), Expect = 2.810e-56
Identity = 91/187 (48.66%), Postives = 116/187 (62.03%), Query Frame = 0

Query:    2 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMG---------------QLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 173
            VYVGNLSW   W+DLKDHM+A G+V   D+ Q   GRSKGC +VEY +P+EA  A+ +L+++EL GR IFVREDRE+      R G               Q     EG Q+ V N+SWETGW+ LKDHF+QCG V   E+ E   GR +G+  VRF S +DA  AI +L+G D  GR + VR DN+
Sbjct:    2 VYVGNLSWSTGWRDLKDHMKACGDVLRADIMQTHDGRSKGCGIVEYSSPEEAARAVEELNNSELSGRQIFVREDREQTTGSNNRHGGGGFNNQRSHNTSYMQGSPAEEGCQLFVGNLSWETGWRELKDHFRQCGEVDRAEVAEGNDGRKRGFGLVRFHSAKDAQAAIRKLNGVDFMGRPLDVRVDNK 188

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BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs. uniprot
Match: L1ITL9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ITL9_GUITC)

HSP 1 Score: 182 bits (461), Expect = 1.830e-55
Identity = 92/173 (53.18%), Postives = 113/173 (65.32%), Query Frame = 0

Query:    2 VYVGNLSWECQWQDLKDHMRAAG---NVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVRED 171
            VYVGNLSW+ QWQDLKDHMR      NV   D+  E GGRSKGCA+VEY +P++A  AI +L+DTE++GRLIFVREDRE    G         G  GR+V+V N+SWE  WQ LKDH +  G+V   ++     GRSKG   V F S E+A  AI +L+ T+L GR I VRED
Sbjct:   14 VYVGNLSWDAQWQDLKDHMRGPNQNLNVVHADIMYEAGGRSKGCAIVEYASPEDAQRAIAELNDTEMMGRLIFVREDREGFKGGM--------GTGGRRVYVGNLSWECKWQDLKDHMRTAGNVLHADVMTGPDGRSKGCGLVEFSSPEEAVRAIQELNETELMGRMIFVRED 178

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BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs. uniprot
Match: I2CPF4_NANGC (Rnp domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPF4_NANGC)

HSP 1 Score: 181 bits (460), Expect = 3.670e-55
Identity = 97/185 (52.43%), Postives = 122/185 (65.95%), Query Frame = 0

Query:    2 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREE----GPTGTKRMG--QLHE-------GAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 173
            VYVGNLS+E  WQDLKDHMR  GNV   D+ ++  GRSKGC +VEY+ P  A  AIR+L++T+L GRLIFVREDRE+    GP G    G   +H         A GRQ++V N+ +E  WQ LKDHFK    VQ  E+  DA+GRS+G+ TVRFG+  +A  A   L+GT+L+ R I VREDNR
Sbjct:    8 VYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHEGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKMGGPMGGGFQGGASMHRVGVGGPPSAAGRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDAEGRSRGFGTVRFGTAAEAQRAQEALNGTNLNNRTIEVREDNR 191

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BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs. uniprot
Match: A0A3R7H492_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H492_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.220e-52
Identity = 88/178 (49.44%), Postives = 117/178 (65.73%), Query Frame = 0

Query:    2 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTG------TKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 173
            VYVGNL W  +WQ+LKDHM+ AG V   D+ +E GGRSKGC +VEY T +EA++AI  L++TEL GRLIFVREDRE  P G       KR      G EGRQ++V N+ W+T WQ LKD F+  G V+  +I E   GRS+G+  +R+ +   A  AI +L+G +++GR I VR D +
Sbjct:  195 VYVGNLPWNVKWQELKDHMKQAGTVVHADVLEEAGGRSKGCGLVEYATEEEANNAIAQLNNTELEGRLIFVREDRE--PEGGSISKFAKRTAAPRNGGEGRQLYVGNLPWDTNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYANPAHAFQAIERLNGLEIEGRLIEVRLDKK 370

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BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs. uniprot
Match: F0VZJ0_9STRA (RNA binding protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0VZJ0_9STRA)

HSP 1 Score: 179 bits (454), Expect = 3.370e-52
Identity = 90/173 (52.02%), Postives = 117/173 (67.63%), Query Frame = 0

Query:    2 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNRP 174
            VYVGNLSW+ +WQDLKDHMR+AG+V+   +  E GGRSKGC +V Y T  EA +AI  L+DTEL GR IFVREDREE  +   R       A+G +V+V N+ W   WQ+LKDH KQ G+V   ++ E+A G SKG   V F + ++A +AI+ L+ T+L+GR I VRED  P
Sbjct:   72 VYVGNLSWKVKWQDLKDHMRSAGDVEHA-VIMEVGGRSKGCGIVTYATESEAQNAIETLNDTELDGRKIFVREDREENASAQPR-------AKGCRVYVGNLPWTVKWQALKDHMKQAGTVIHADVLEEAGGWSKGCGLVEFSTPDEAQNAIDMLNDTELEGRNIFVREDREP 236

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BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs. uniprot
Match: H3GHR3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHR3_PHYRM)

HSP 1 Score: 178 bits (452), Expect = 4.260e-52
Identity = 89/178 (50.00%), Postives = 116/178 (65.17%), Query Frame = 0

Query:    2 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTG------TKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 173
            VYVGNLSW  +WQ+LKDHM+ AG V   D+ +E  GRSKGC +VEY T  EA+ AI +L+++EL GRLIFVREDRE  P G       KR        EGRQ++V N+ WET WQ LKD F+  G V+  +I E   GRS+G+  +R+ +  DA  AI +L+G +++GR I VR D R
Sbjct:  166 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLEESNGRSKGCGLVEYATQDEANKAIAELNNSELEGRLIFVREDRE--PEGGSISKLAKRAAAPRGNGEGRQLYVGNLPWETNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 341

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BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs. uniprot
Match: A0A7S0E283_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E283_9EUKA)

HSP 1 Score: 175 bits (443), Expect = 5.760e-52
Identity = 85/172 (49.42%), Postives = 110/172 (63.95%), Query Frame = 0

Query:    1 QVYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREE-GPTGTKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVRED 171
            QVYVGNLSWE  WQDLKDH RAAG+V   D+  E  GRSKGC +V + + ++A +AI  LHD++L GR IFVREDRE   P G K      +G  G QV+V N+ WET W +LKDHF+  G+V   ++  D +G+S+G+ TV F +  DAA AI   + +    R I VR D
Sbjct:   64 QVYVGNLSWETSWQDLKDHFRAAGDVSHADVMMEHDGRSKGCGIVSFVSARDAGNAIASLHDSDLHGRKIFVREDREATAPGGGKGXXXXXQGTGGCQVYVGNLPWETNWMNLKDHFRDAGNVLHADVVMDPEGKSRGFGTVLFATTRDAAKAIQLFNESVFGSRTIEVRPD 235

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BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs. uniprot
Match: A0A0W8CZ84_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CZ84_PHYNI)

HSP 1 Score: 176 bits (445), Expect = 6.660e-52
Identity = 88/178 (49.44%), Postives = 115/178 (64.61%), Query Frame = 0

Query:    2 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTG------TKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 173
            VYVGNLSW  +WQ+LKDHM+ AG V   D+ +   GRSKGC +VEY T +EA  AI +L++TEL GRLIFVREDRE  P G       KR        EGRQ++V N+ W+T WQ LKD F+  G V+  +I E   GRS+G+  +R+ +  DA  AI +L+G +++GR I VR D R
Sbjct:   93 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE--PEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVRLDKR 268

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BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs. uniprot
Match: A0A329T2W9_9STRA (Uncharacterized protein n=25 Tax=Phytophthora TaxID=4783 RepID=A0A329T2W9_9STRA)

HSP 1 Score: 176 bits (446), Expect = 3.460e-51
Identity = 88/178 (49.44%), Postives = 115/178 (64.61%), Query Frame = 0

Query:    2 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTG------TKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 173
            VYVGNLSW  +WQ+LKDHM+ AG V   D+ +   GRSKGC +VEY T +EA  AI +L++TEL GRLIFVREDRE  P G       KR    H   E RQ++V N+ W+T WQ LKD F+  G V+  +I E   GRS+G+  +R+ +  DA  AI +L+G +++GR I VR D R
Sbjct:  167 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE--PEGGSISKFAKRASAPHGSGESRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 342

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G466_ECTSI	2.350e-120	96.53	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
B8CBN8_THAPS	2.810e-56	48.66	Uncharacterized protein (Fragment) n=1 Tax=Thalass...	[more]
L1ITL9_GUITC	1.830e-55	53.18	Uncharacterized protein n=1 Tax=Guillardia theta (...	[more]
I2CPF4_NANGC	3.670e-55	52.43	Rnp domain-containing protein n=1 Tax=Nannochlorop...	[more]
A0A3R7H492_9STRA	2.220e-52	49.44	Uncharacterized protein n=3 Tax=Phytophthora kerno...	[more]
F0VZJ0_9STRA	3.370e-52	52.02	RNA binding protein putative n=2 Tax=Albugo TaxID=...	[more]
H3GHR3_PHYRM	4.260e-52	50.00	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
A0A7S0E283_9EUKA	5.760e-52	49.42	Hypothetical protein n=1 Tax=Phaeocystis antarctic...	[more]
A0A0W8CZ84_PHYNI	6.660e-52	49.44	Uncharacterized protein n=1 Tax=Phytophthora nicot...	[more]
A0A329T2W9_9STRA	3.460e-51	49.44	Uncharacterized protein n=25 Tax=Phytophthora TaxI...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 97..169 e-value: 3.3E-22 score: 89.8 coord: 1..73 e-value: 7.9E-19 score: 78.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 2..69 e-value: 3.6E-16 score: 58.7 coord: 99..166 e-value: 1.1E-18 score: 66.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..77 score: 14.436
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 96..173 score: 16.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 92..174 e-value: 1.9E-24 score: 87.5 coord: 1..81 e-value: 2.3E-24 score: 87.2
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 82..172 coord: 1..77
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 2..82
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 94..171

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8214	contig	E_fasciculatus_S2_contig8214:177..866 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8214.16370.1	mRNA_E_fasciculatus_S2_contig8214.16370.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig8214 177..866 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig8214.16370.1 ID=prot_E_fasciculatus_S2_contig8214.16370.1|Name=mRNA_E_fasciculatus_S2_contig8214.16370.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=175bp
QVYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETP
QEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMGQLHEGAEGRQVHV
SNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAA
DAINQLDGTDLDGRRIGVREDNRP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom