mRNA_E_fasciculatus_S2_contig8214.16370.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8214.16370.1
Unique NamemRNA_E_fasciculatus_S2_contig8214.16370.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G466_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 2.350e-120
Identity = 167/173 (96.53%), Postives = 171/173 (98.84%), Query Frame = 1
Query:    4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNRP 522
            VYVGNLSWECQWQDLKDHMRAAG+VKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGP G+KR+GQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCG VQFVEIPEDAQGRSKGYATVRFGSE+DAADAINQLDGTDLDGRRIGVREDNRP
Sbjct:  264 VYVGNLSWECQWQDLKDHMRAAGSVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPIGSKRIGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGRVQFVEIPEDAQGRSKGYATVRFGSEQDAADAINQLDGTDLDGRRIGVREDNRP 436          
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBN8_THAPS)

HSP 1 Score: 184 bits (467), Expect = 2.810e-56
Identity = 91/187 (48.66%), Postives = 116/187 (62.03%), Query Frame = 1
Query:    4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMG---------------QLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 519
            VYVGNLSW   W+DLKDHM+A G+V   D+ Q   GRSKGC +VEY +P+EA  A+ +L+++EL GR IFVREDRE+      R G               Q     EG Q+ V N+SWETGW+ LKDHF+QCG V   E+ E   GR +G+  VRF S +DA  AI +L+G D  GR + VR DN+
Sbjct:    2 VYVGNLSWSTGWRDLKDHMKACGDVLRADIMQTHDGRSKGCGIVEYSSPEEAARAVEELNNSELSGRQIFVREDREQTTGSNNRHGGGGFNNQRSHNTSYMQGSPAEEGCQLFVGNLSWETGWRELKDHFRQCGEVDRAEVAEGNDGRKRGFGLVRFHSAKDAQAAIRKLNGVDFMGRPLDVRVDNK 188          
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ITL9_GUITC)

HSP 1 Score: 182 bits (461), Expect = 1.830e-55
Identity = 92/173 (53.18%), Postives = 113/173 (65.32%), Query Frame = 1
Query:    4 VYVGNLSWECQWQDLKDHMRAAG---NVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVRED 513
            VYVGNLSW+ QWQDLKDHMR      NV   D+  E GGRSKGCA+VEY +P++A  AI +L+DTE++GRLIFVREDRE    G         G  GR+V+V N+SWE  WQ LKDH +  G+V   ++     GRSKG   V F S E+A  AI +L+ T+L GR I VRED
Sbjct:   14 VYVGNLSWDAQWQDLKDHMRGPNQNLNVVHADIMYEAGGRSKGCAIVEYASPEDAQRAIAELNDTEMMGRLIFVREDREGFKGGM--------GTGGRRVYVGNLSWECKWQDLKDHMRTAGNVLHADVMTGPDGRSKGCGLVEFSSPEEAVRAIQELNETELMGRMIFVRED 178          
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Rnp (domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPF4_NANGC)

HSP 1 Score: 181 bits (460), Expect = 3.670e-55
Identity = 97/185 (52.43%), Postives = 122/185 (65.95%), Query Frame = 1
Query:    4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREE----GPTGTKRMG--QLHE-------GAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 519
            VYVGNLS+E  WQDLKDHMR  GNV   D+ ++  GRSKGC +VEY+ P  A  AIR+L++T+L GRLIFVREDRE+    GP G    G   +H         A GRQ++V N+ +E  WQ LKDHFK    VQ  E+  DA+GRS+G+ TVRFG+  +A  A   L+GT+L+ R I VREDNR
Sbjct:    8 VYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHEGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKMGGPMGGGFQGGASMHRVGVGGPPSAAGRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDAEGRSRGFGTVRFGTAAEAQRAQEALNGTNLNNRTIEVREDNR 191          
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H492_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.220e-52
Identity = 88/178 (49.44%), Postives = 117/178 (65.73%), Query Frame = 1
Query:    4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTG------TKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 519
            VYVGNL W  +WQ+LKDHM+ AG V   D+ +E GGRSKGC +VEY T +EA++AI  L++TEL GRLIFVREDRE  P G       KR      G EGRQ++V N+ W+T WQ LKD F+  G V+  +I E   GRS+G+  +R+ +   A  AI +L+G +++GR I VR D +
Sbjct:  195 VYVGNLPWNVKWQELKDHMKQAGTVVHADVLEEAGGRSKGCGLVEYATEEEANNAIAQLNNTELEGRLIFVREDRE--PEGGSISKFAKRTAAPRNGGEGRQLYVGNLPWDTNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYANPAHAFQAIERLNGLEIEGRLIEVRLDKK 370          
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: RNA (binding protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0VZJ0_9STRA)

HSP 1 Score: 179 bits (454), Expect = 3.370e-52
Identity = 90/173 (52.02%), Postives = 117/173 (67.63%), Query Frame = 1
Query:    4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNRP 522
            VYVGNLSW+ +WQDLKDHMR+AG+V+   +  E GGRSKGC +V Y T  EA +AI  L+DTEL GR IFVREDREE  +   R       A+G +V+V N+ W   WQ+LKDH KQ G+V   ++ E+A G SKG   V F + ++A +AI+ L+ T+L+GR I VRED  P
Sbjct:   72 VYVGNLSWKVKWQDLKDHMRSAGDVEHA-VIMEVGGRSKGCGIVTYATESEAQNAIETLNDTELDGRKIFVREDREENASAQPR-------AKGCRVYVGNLPWTVKWQALKDHMKQAGTVIHADVLEEAGGWSKGCGLVEFSTPDEAQNAIDMLNDTELEGRNIFVREDREP 236          
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHR3_PHYRM)

HSP 1 Score: 178 bits (452), Expect = 4.260e-52
Identity = 89/178 (50.00%), Postives = 116/178 (65.17%), Query Frame = 1
Query:    4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTG------TKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 519
            VYVGNLSW  +WQ+LKDHM+ AG V   D+ +E  GRSKGC +VEY T  EA+ AI +L+++EL GRLIFVREDRE  P G       KR        EGRQ++V N+ WET WQ LKD F+  G V+  +I E   GRS+G+  +R+ +  DA  AI +L+G +++GR I VR D R
Sbjct:  166 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLEESNGRSKGCGLVEYATQDEANKAIAELNNSELEGRLIFVREDRE--PEGGSISKLAKRAAAPRGNGEGRQLYVGNLPWETNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 341          
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E283_9EUKA)

HSP 1 Score: 175 bits (443), Expect = 5.760e-52
Identity = 85/172 (49.42%), Postives = 110/172 (63.95%), Query Frame = 1
Query:    1 QVYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREE-GPTGTKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVRED 513
            QVYVGNLSWE  WQDLKDH RAAG+V   D+  E  GRSKGC +V + + ++A +AI  LHD++L GR IFVREDRE   P G K      +G  G QV+V N+ WET W +LKDHF+  G+V   ++  D +G+S+G+ TV F +  DAA AI   + +    R I VR D
Sbjct:   64 QVYVGNLSWETSWQDLKDHFRAAGDVSHADVMMEHDGRSKGCGIVSFVSARDAGNAIASLHDSDLHGRKIFVREDREATAPGGGKGXXXXXQGTGGCQVYVGNLPWETNWMNLKDHFRDAGNVLHADVVMDPEGKSRGFGTVLFATTRDAAKAIQLFNESVFGSRTIEVRPD 235          
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CZ84_PHYNI)

HSP 1 Score: 176 bits (445), Expect = 6.660e-52
Identity = 88/178 (49.44%), Postives = 115/178 (64.61%), Query Frame = 1
Query:    4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTG------TKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 519
            VYVGNLSW  +WQ+LKDHM+ AG V   D+ +   GRSKGC +VEY T +EA  AI +L++TEL GRLIFVREDRE  P G       KR        EGRQ++V N+ W+T WQ LKD F+  G V+  +I E   GRS+G+  +R+ +  DA  AI +L+G +++GR I VR D R
Sbjct:   93 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE--PEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVRLDKR 268          
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Match: Uncharacterized (protein n=25 Tax=Phytophthora TaxID=4783 RepID=A0A329T2W9_9STRA)

HSP 1 Score: 176 bits (446), Expect = 3.460e-51
Identity = 88/178 (49.44%), Postives = 115/178 (64.61%), Query Frame = 1
Query:    4 VYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVREDREEGPTG------TKRMGQLHEGAEGRQVHVSNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAADAINQLDGTDLDGRRIGVREDNR 519
            VYVGNLSW  +WQ+LKDHM+ AG V   D+ +   GRSKGC +VEY T +EA  AI +L++TEL GRLIFVREDRE  P G       KR    H   E RQ++V N+ W+T WQ LKD F+  G V+  +I E   GRS+G+  +R+ +  DA  AI +L+G +++GR I VR D R
Sbjct:  167 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE--PEGGSISKFAKRASAPHGSGESRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 342          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8214.16370.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.350e-12096.53protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G466... [more]
Uncharacterized2.810e-5648.66protein (Fragment) n=1 Tax=Thalassiosira pseudonan... [more]
Uncharacterized1.830e-5553.18protein n=1 Tax=Guillardia theta (strain CCMP2712)... [more]
Rnp3.670e-5552.43domain-containing protein n=1 Tax=Nannochloropsis ... [more]
Uncharacterized2.220e-5249.44protein n=3 Tax=Phytophthora kernoviae TaxID=32545... [more]
RNA3.370e-5252.02binding protein putative n=2 Tax=Albugo TaxID=6535... [more]
Uncharacterized4.260e-5250.00protein n=1 Tax=Phytophthora ramorum TaxID=164328 ... [more]
Hypothetical5.760e-5249.42protein n=1 Tax=Phaeocystis antarctica TaxID=33657... [more]
Uncharacterized6.660e-5249.44protein n=1 Tax=Phytophthora nicotianae TaxID=4790... [more]
Uncharacterized3.460e-5149.44protein n=25 Tax=Phytophthora TaxID=4783 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8214contigE_fasciculatus_S2_contig8214:177..866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score355.1
Seed ortholog evalue1.8e-95
Seed eggNOG ortholog2880.D7G466
Model size525
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.RNA binding
EggNOG OGsKOG0118@1,KOG0118@2759
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-02_001450.1
Cds size525
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842482.9111123-CDS-E_fasciculatus_S2_contig8214:176..4101696842482.9111123-CDS-E_fasciculatus_S2_contig8214:176..410Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8214 177..410 +
1696842482.9253292-CDS-E_fasciculatus_S2_contig8214:575..8661696842482.9253292-CDS-E_fasciculatus_S2_contig8214:575..866Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8214 576..866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8214.16370.1prot_E_fasciculatus_S2_contig8214.16370.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8214 177..866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8214.16370.1

>prot_E_fasciculatus_S2_contig8214.16370.1 ID=prot_E_fasciculatus_S2_contig8214.16370.1|Name=mRNA_E_fasciculatus_S2_contig8214.16370.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=175bp
QVYVGNLSWECQWQDLKDHMRAAGNVKFVDLFQEPGGRSKGCAVVEYETP
QEAHSAIRDLHDTELLGRLIFVREDREEGPTGTKRMGQLHEGAEGRQVHV
SNVSWETGWQSLKDHFKQCGSVQFVEIPEDAQGRSKGYATVRFGSEEDAA
DAINQLDGTDLDGRRIGVREDNRP*
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mRNA from alignment at E_fasciculatus_S2_contig8214:177..866+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8214.16370.1 ID=mRNA_E_fasciculatus_S2_contig8214.16370.1|Name=mRNA_E_fasciculatus_S2_contig8214.16370.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=690bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8214:177..866+ (Ectocarpus fasciculatus EfasUO2)
CAGGTTTATGTTGGCAACTTGAGCTGGGAATGCCAATGGCAAGACCTGAA GGATCACATGAGAGCGGCCGGCAACGTAAAGTTTGTCGATTTGTTCCAAG AGCCCGGCGGGAGGTCCAAGGGATGCGCCGTCGTGGAGTACGAAACGCCT CAAGAAGCGCACAGCGCAATTCGAGACCTACACGACACAGAGCTCTTGGG GCGTCTGATTTTCGTGAGGGAGGACCGTGAAGAGGTGGGGCCTGGTGCGG GCGGAGTAGTGGTTGGGCGTCTTTGCCGGCCTCAATGGTCTGAGAATGCT TCGCAAGGGAGGCAAGGAAAATATCTCCTGTGTATGCCGTTCACCCTTTT TTGCCAACCTATGGACCACCTTCTGCCTCTCTCTTGGTGTCCTCGGCAGG GACCCACCGGTACCAAACGAATGGGTCAGCTGCACGAAGGGGCAGAGGGA CGCCAGGTTCATGTTTCAAACGTGAGCTGGGAAACGGGGTGGCAGAGCCT CAAGGACCACTTCAAGCAATGTGGAAGCGTGCAATTCGTGGAGATCCCCG AGGATGCACAAGGCCGCTCGAAAGGATATGCAACCGTGCGCTTCGGATCG GAAGAAGATGCTGCTGATGCCATCAACCAGCTCGACGGCACAGACCTTGA TGGACGCCGCATTGGCGTTCGCGAAGACAACAGGCCCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8214:177..866+

>mRNA_E_fasciculatus_S2_contig8214.16370.1 ID=mRNA_E_fasciculatus_S2_contig8214.16370.1|Name=mRNA_E_fasciculatus_S2_contig8214.16370.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=525bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8214:177..866+ (Ectocarpus fasciculatus EfasUO2)
CAGGTTTATGTTGGCAACTTGAGCTGGGAATGCCAATGGCAAGACCTGAA
GGATCACATGAGAGCGGCCGGCAACGTAAAGTTTGTCGATTTGTTCCAAG
AGCCCGGCGGGAGGTCCAAGGGATGCGCCGTCGTGGAGTACGAAACGCCT
CAAGAAGCGCACAGCGCAATTCGAGACCTACACGACACAGAGCTCTTGGG
GCGTCTGATTTTCGTGAGGGAGGACCGTGAAGAGGGACCCACCGGTACCA
AACGAATGGGTCAGCTGCACGAAGGGGCAGAGGGACGCCAGGTTCATGTT
TCAAACGTGAGCTGGGAAACGGGGTGGCAGAGCCTCAAGGACCACTTCAA
GCAATGTGGAAGCGTGCAATTCGTGGAGATCCCCGAGGATGCACAAGGCC
GCTCGAAAGGATATGCAACCGTGCGCTTCGGATCGGAAGAAGATGCTGCT
GATGCCATCAACCAGCTCGACGGCACAGACCTTGATGGACGCCGCATTGG
CGTTCGCGAAGACAACAGGCCCTAA
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