mRNA_E_fasciculatus_S2_contig8129.16281.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Leucine (rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI) HSP 1 Score: 109 bits (273), Expect = 5.690e-25 Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = 1
Query: 64 GGDTEGDTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
G E D +H + Q++SF L L + +LE V++L+ + PGT L++ L EL+RLVAMA+ LG+M SRH +E +Q +E +L GPK YYTAIR G+CNAYLAASVV S LV TSK G
Sbjct: 399 GSSREADMDHMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTG 527
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE) HSP 1 Score: 109 bits (273), Expect = 5.820e-25 Identity = 64/130 (49.23%), Postives = 84/130 (64.62%), Query Frame = 1
Query: 76 EGDTEHAFRVQVASFPELEELTRENRGQLENVKRLLG-----KPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
E D +FR QVASF L LT+ +R L+ +K+L+ P AD V P E D LR+L+RL MA TLGE+AS H ED+ +Q +E L++ K Y+ A+R GVCNA+LA+SVVGS LV+TSK G
Sbjct: 738 ERDPGDSFREQVASFAGLAALTKGDREALDEIKQLIRVPPIRAPYADGVSPAPEPIDEANLRDLNRLAEMATTLGEIASSHMEDQWMQGREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTG 867
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI) HSP 1 Score: 109 bits (272), Expect = 7.910e-25 Identity = 64/130 (49.23%), Postives = 84/130 (64.62%), Query Frame = 1
Query: 76 EGDTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPV-----ADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
E D H+F QVASF L LT+ + L+ +K+L+ P AD V P E D EKLR+L+RL MA TL E+AS H ED+ +Q +E L++ K Y+ A+R GVCNA+LA+SVVGS LV+TSK G
Sbjct: 711 ERDPGHSFGEQVASFAGLAALTKGDCEALDEIKQLIRAPPIRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLSEIASSHMEDQWMQEREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTG 840
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI) HSP 1 Score: 108 bits (271), Expect = 1.060e-24 Identity = 63/129 (48.84%), Postives = 80/129 (62.02%), Query Frame = 1
Query: 64 GGDTEGDTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
G E D +H + Q++SF L L ++ LE V +L+ + PGT L L EL+RLVAMA+ LG+M SRH +E +Q +E +L GPK YYTAIR G+CNAYLAASVV S LV TSK G
Sbjct: 426 GSSREADMDHITQAQISSFSSLSTLCGGSQASLEQVGQLVEALGINRSSPGTGLNGTGTLGELNRLVAMAEDLGDMVSRHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTG 554
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 107 bits (266), Expect = 5.060e-24 Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 1
Query: 82 DTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
+ + FRVQ++S L+ L +EN LE+++R++ P A EL+D E+ R+L L+ MAK LGE+A HTED+ +Q KE +LA K YYTA+R G+CNAYLAASV+ S VSTSK G
Sbjct: 472 EVDRLFRVQLSSSAGLDSLIKENPEALEDIQRVIKAPAAGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTG 594
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Leucine (Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.120e-22 Identity = 64/136 (47.06%), Postives = 83/136 (61.03%), Query Frame = 1
Query: 43 GPMSSSGGGDTEGDTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
GP+S G E D + + Q++SF L L LE V++L+ + PGT L++ L E++RLVAMA+ LG M SRH +E +Q +E +L GPK YYTAIR G+CNAYLAASVV S LV TSK G
Sbjct: 607 GPIS---GSSREADMDDMTQAQISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLSETGTLGEVNRLVAMAEDLGGMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTG 739
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.530e-22 Identity = 58/123 (47.15%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 82 DTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
+ + FRVQ++S + L REN LE++ R++ P A ++ E++D E+ R+L LV MAK LGE+A HTED +Q KE +L K YYTA+R G+CNAYLAASV+ S VST K G
Sbjct: 432 EVDRLFRVQLSSSAGFDSLIRENPEALEDIHRVIKAPAAGSLDFVDEISDMERRRKLGTLVNMAKALGEVALSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTG 554
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI) HSP 1 Score: 102 bits (253), Expect = 2.690e-22 Identity = 55/123 (44.72%), Postives = 80/123 (65.04%), Query Frame = 1
Query: 82 DTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
+ + F+ Q++S L+ L REN G LE+++R++ VA +V EL+D + R+L LV M+ LGE+ +HTED ++ +E +L K YYTA+R G+CNAYLAASV+ S VSTSK G
Sbjct: 317 EADRVFKAQLSSSAGLDSLIRENPGALEDIQRVIEASVAGSVSVDNELSDMQSRRKLGTLVTMSTALGEVVLKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTG 439
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 3.280e-21 Identity = 57/123 (46.34%), Postives = 73/123 (59.35%), Query Frame = 1
Query: 82 DTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
+ + FR Q+ S L+ L REN LEN++ + + VA + P EL D + R L LV M+ LGE+A RHTED +Q KE +L K YYTAIR G+C AYLAAS + S V TSK G
Sbjct: 355 EVDRLFRAQLVSSAGLDSLIRENPAALENIQLAIERQVAGSFYPDNELGDMQSRRNLGTLVTMSTALGEVALRHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTG 477
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH88_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 6.820e-21 Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = 1
Query: 97 FRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
FRVQ++S L+ L EN LE+++R++ V +V P E +D E+ REL L +M+ LGE+ +HTED +Q KE +L + YYTA+R G+C AYLAASV+ S VSTSK G
Sbjct: 309 FRVQLSSSAWLDSLIGENPEALEDIQRVIESQVPGSVSPDDERSDMERHRELGTLASMSTALGEVVLKHTEDMDVQQKELALPAFWRAYYTAVRTGLCEAYLAASVINSDWVSTSKTG 426 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8129.16281.1 >prot_E_fasciculatus_S2_contig8129.16281.1 ID=prot_E_fasciculatus_S2_contig8129.16281.1|Name=mRNA_E_fasciculatus_S2_contig8129.16281.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=151bp HASSESGGTAPTADGPMSSSGGGDTEGDTEHAFRVQVASFPELEELTRENback to top mRNA from alignment at E_fasciculatus_S2_contig8129:4173..4835- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8129.16281.1 ID=mRNA_E_fasciculatus_S2_contig8129.16281.1|Name=mRNA_E_fasciculatus_S2_contig8129.16281.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=663bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8129:4173..4835- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8129:4173..4835- >mRNA_E_fasciculatus_S2_contig8129.16281.1 ID=mRNA_E_fasciculatus_S2_contig8129.16281.1|Name=mRNA_E_fasciculatus_S2_contig8129.16281.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=453bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8129:4173..4835- (Ectocarpus fasciculatus EfasUO2)back to top |