mRNA_E_fasciculatus_S2_contig8129.16281.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8129.16281.1
Unique NamemRNA_E_fasciculatus_S2_contig8129.16281.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Leucine (rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 5.690e-25
Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = 1
Query:   64 GGDTEGDTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
            G   E D +H  + Q++SF  L  L   +  +LE V++L+     +   PGT L++   L EL+RLVAMA+ LG+M SRH  +E +Q +E +L  GPK YYTAIR G+CNAYLAASVV S LV TSK G
Sbjct:  399 GSSREADMDHMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTG 527          
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 5.820e-25
Identity = 64/130 (49.23%), Postives = 84/130 (64.62%), Query Frame = 1
Query:   76 EGDTEHAFRVQVASFPELEELTRENRGQLENVKRLLG-----KPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
            E D   +FR QVASF  L  LT+ +R  L+ +K+L+       P AD V P  E  D   LR+L+RL  MA TLGE+AS H ED+ +Q +E  L++  K Y+ A+R GVCNA+LA+SVVGS LV+TSK G
Sbjct:  738 ERDPGDSFREQVASFAGLAALTKGDREALDEIKQLIRVPPIRAPYADGVSPAPEPIDEANLRDLNRLAEMATTLGEIASSHMEDQWMQGREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTG 867          
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 7.910e-25
Identity = 64/130 (49.23%), Postives = 84/130 (64.62%), Query Frame = 1
Query:   76 EGDTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPV-----ADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
            E D  H+F  QVASF  L  LT+ +   L+ +K+L+  P      AD V P  E  D EKLR+L+RL  MA TL E+AS H ED+ +Q +E  L++  K Y+ A+R GVCNA+LA+SVVGS LV+TSK G
Sbjct:  711 ERDPGHSFGEQVASFAGLAALTKGDCEALDEIKQLIRAPPIRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLSEIASSHMEDQWMQEREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTG 840          
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.060e-24
Identity = 63/129 (48.84%), Postives = 80/129 (62.02%), Query Frame = 1
Query:   64 GGDTEGDTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
            G   E D +H  + Q++SF  L  L   ++  LE V +L+     +   PGT L     L EL+RLVAMA+ LG+M SRH  +E +Q +E +L  GPK YYTAIR G+CNAYLAASVV S LV TSK G
Sbjct:  426 GSSREADMDHITQAQISSFSSLSTLCGGSQASLEQVGQLVEALGINRSSPGTGLNGTGTLGELNRLVAMAEDLGDMVSRHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTG 554          
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 5.060e-24
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 1
Query:   82 DTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
            + +  FRVQ++S   L+ L +EN   LE+++R++  P A       EL+D E+ R+L  L+ MAK LGE+A  HTED+ +Q KE +LA   K YYTA+R G+CNAYLAASV+ S  VSTSK G
Sbjct:  472 EVDRLFRVQLSSSAGLDSLIKENPEALEDIQRVIKAPAAGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTG 594          
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Leucine (Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.120e-22
Identity = 64/136 (47.06%), Postives = 83/136 (61.03%), Query Frame = 1
Query:   43 GPMSSSGGGDTEGDTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
            GP+S   G   E D +   + Q++SF  L  L       LE V++L+     +   PGT L++   L E++RLVAMA+ LG M SRH  +E +Q +E +L  GPK YYTAIR G+CNAYLAASVV S LV TSK G
Sbjct:  607 GPIS---GSSREADMDDMTQAQISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLSETGTLGEVNRLVAMAEDLGGMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTG 739          
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.530e-22
Identity = 58/123 (47.15%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   82 DTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
            + +  FRVQ++S    + L REN   LE++ R++  P A ++    E++D E+ R+L  LV MAK LGE+A  HTED  +Q KE +L    K YYTA+R G+CNAYLAASV+ S  VST K G
Sbjct:  432 EVDRLFRVQLSSSAGFDSLIRENPEALEDIHRVIKAPAAGSLDFVDEISDMERRRKLGTLVNMAKALGEVALSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTG 554          
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.690e-22
Identity = 55/123 (44.72%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   82 DTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
            + +  F+ Q++S   L+ L REN G LE+++R++   VA +V    EL+D +  R+L  LV M+  LGE+  +HTED  ++ +E +L    K YYTA+R G+CNAYLAASV+ S  VSTSK G
Sbjct:  317 EADRVFKAQLSSSAGLDSLIRENPGALEDIQRVIEASVAGSVSVDNELSDMQSRRKLGTLVTMSTALGEVVLKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTG 439          
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.280e-21
Identity = 57/123 (46.34%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   82 DTEHAFRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
            + +  FR Q+ S   L+ L REN   LEN++  + + VA +  P  EL D +  R L  LV M+  LGE+A RHTED  +Q KE +L    K YYTAIR G+C AYLAAS + S  V TSK G
Sbjct:  355 EVDRLFRAQLVSSAGLDSLIRENPAALENIQLAIERQVAGSFYPDNELGDMQSRRNLGTLVTMSTALGEVALRHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTG 477          
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH88_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 6.820e-21
Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = 1
Query:   97 FRVQVASFPELEELTRENRGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASRHTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG 450
            FRVQ++S   L+ L  EN   LE+++R++   V  +V P  E +D E+ REL  L +M+  LGE+  +HTED  +Q KE +L    + YYTA+R G+C AYLAASV+ S  VSTSK G
Sbjct:  309 FRVQLSSSAWLDSLIGENPEALEDIQRVIESQVPGSVSPDDERSDMERHRELGTLASMSTALGEVVLKHTEDMDVQQKELALPAFWRAYYTAVRTGLCEAYLAASVINSDWVSTSKTG 426          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8129.16281.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Leucine5.690e-2548.84rich repeat protein n=1 Tax=Ectocarpus siliculosus... [more]
Uncharacterized5.820e-2549.23protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical7.910e-2549.23leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Putative1.060e-2448.84Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Putative5.060e-2448.78Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Leucine1.120e-2247.06Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus... [more]
Uncharacterized1.530e-2247.15protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical2.690e-2244.72leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Hypothetical3.280e-2146.34leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Putative6.820e-2146.61Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8129contigE_fasciculatus_S2_contig8129:4173..4835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score111.7
Seed ortholog evalue3e-22
Seed eggNOG ortholog2880.D7FUA2
Model size455
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons2
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002670.3
EC2.7.11.1
Cds size453
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842474.358198-CDS-E_fasciculatus_S2_contig8129:4172..43311696842474.358198-CDS-E_fasciculatus_S2_contig8129:4172..4331Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8129 4173..4331 -
1696842474.3732896-CDS-E_fasciculatus_S2_contig8129:4541..48351696842474.3732896-CDS-E_fasciculatus_S2_contig8129:4541..4835Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8129 4542..4835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8129.16281.1prot_E_fasciculatus_S2_contig8129.16281.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8129 4173..4835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8129.16281.1

>prot_E_fasciculatus_S2_contig8129.16281.1 ID=prot_E_fasciculatus_S2_contig8129.16281.1|Name=mRNA_E_fasciculatus_S2_contig8129.16281.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=151bp
HASSESGGTAPTADGPMSSSGGGDTEGDTEHAFRVQVASFPELEELTREN
RGQLENVKRLLGKPVADTVRPGTELTDGEKLRELDRLVAMAKTLGEMASR
HTEDEGLQLKEASLARGPKEYYTAIRGGVCNAYLAASVVGSGLVSTSKIG
A
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mRNA from alignment at E_fasciculatus_S2_contig8129:4173..4835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8129.16281.1 ID=mRNA_E_fasciculatus_S2_contig8129.16281.1|Name=mRNA_E_fasciculatus_S2_contig8129.16281.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=663bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8129:4173..4835- (Ectocarpus fasciculatus EfasUO2)
CACGCAAGCTCGGAGTCGGGGGGGACAGCCCCCACTGCCGATGGACCGAT GTCCTCGTCAGGGGGGGGCGATACGGAGGGCGATACGGAGCACGCGTTTC GGGTGCAGGTGGCTTCCTTCCCAGAGCTGGAGGAGCTCACTCGAGAAAAC CGTGGACAGCTTGAGAACGTAAAACGCCTCCTCGGAAAACCTGTCGCTGA TACCGTTCGTCCCGGCACTGAGCTCACCGACGGGGAAAAGCTTCGGGAGC TGGACAGGCTGGTAGCAATGGCCAAGACTCTGGGCGAGATGGCGGTGAGT TTTCCGCTTTCTCAGTACGCAACAGTATCGGTGTGTCAGGGCTGAGTTTG GATAGAGTAGTCGTAGGAAGCATGGCAATTTGTACAAATACCCTTGCACG CGACTGCGGGCGTGCTCCCTCTCCTGGTCTTCTGCAAAGTACTTGGCGTA CCCAAAGGCTGTATTCGAGTTGACATTGCCATGCGATGCTATCCGAGTGC ACAGTCAAGGCACACCGAGGACGAGGGCTTACAGCTGAAGGAGGCGAGTT TAGCCCGGGGTCCTAAGGAGTACTACACGGCAATCAGAGGTGGCGTATGC AACGCCTATCTCGCGGCCAGCGTCGTCGGCAGCGGCTTGGTGTCGACGAG CAAAATCGGTGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8129:4173..4835-

>mRNA_E_fasciculatus_S2_contig8129.16281.1 ID=mRNA_E_fasciculatus_S2_contig8129.16281.1|Name=mRNA_E_fasciculatus_S2_contig8129.16281.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=453bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8129:4173..4835- (Ectocarpus fasciculatus EfasUO2)
CACGCAAGCTCGGAGTCGGGGGGGACAGCCCCCACTGCCGATGGACCGAT
GTCCTCGTCAGGGGGGGGCGATACGGAGGGCGATACGGAGCACGCGTTTC
GGGTGCAGGTGGCTTCCTTCCCAGAGCTGGAGGAGCTCACTCGAGAAAAC
CGTGGACAGCTTGAGAACGTAAAACGCCTCCTCGGAAAACCTGTCGCTGA
TACCGTTCGTCCCGGCACTGAGCTCACCGACGGGGAAAAGCTTCGGGAGC
TGGACAGGCTGGTAGCAATGGCCAAGACTCTGGGCGAGATGGCGTCAAGG
CACACCGAGGACGAGGGCTTACAGCTGAAGGAGGCGAGTTTAGCCCGGGG
TCCTAAGGAGTACTACACGGCAATCAGAGGTGGCGTATGCAACGCCTATC
TCGCGGCCAGCGTCGTCGGCAGCGGCTTGGTGTCGACGAGCAAAATCGGT
GCC
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