mRNA_E_fasciculatus_S2_contig7546.15710.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7546.15710.1
Unique NamemRNA_E_fasciculatus_S2_contig7546.15710.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7546.15710.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXP9_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 8.510e-81
Identity = 123/129 (95.35%), Postives = 127/129 (98.45%), Query Frame = 2
Query:   32 GEGAGWWSRYKNDTISMADLALTLVSTCHPREMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTSTDFARAAKVISGKELSPECVWLVFKMFDRGADGRLEHDELIE 418
            G+G+GWWSRYKNDTISMADLALTLVST HPR+MPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVT+TDFARAAKVISGKELSPECVWLVFKMFD GADGRLEHDELIE
Sbjct:   71 GDGSGWWSRYKNDTISMADLALTLVSTSHPRKMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTATDFARAAKVISGKELSPECVWLVFKMFDSGADGRLEHDELIE 199          
BLAST of mRNA_E_fasciculatus_S2_contig7546.15710.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SJ15_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.290e-11
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 2
Query:   62 KNDTISMADLALTLVSTCHPREMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTSTDFARAAKVISGKELSPECVWLVFKMFDRGADGRLEHDELIE 418
            K  T+S+ D ALTL+S   P ++P +L RVQ +      +   +    H  ++ +  D++ A  +    +    +T  DF RAA V+SG ELS   V L F++FD  A+G L+H EL +
Sbjct:  318 KQQTMSVHDFALTLISCFDPEKLPPYLDRVQELNASDGVVMWDEFFAFHFNVQCNLPDIKLAFEL----TGADEITEADFVRAAHVVSGVELSSPVVQLAFRIFDENANGTLDHSELFK 432          
BLAST of mRNA_E_fasciculatus_S2_contig7546.15710.1 vs.
Match: Uncharacterized (protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZSQ1_PHYSP)

HSP 1 Score: 68.6 bits (166), Expect = 7.860e-11
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 2
Query:   62 KNDTISMADLALTLVSTCHPREMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTSTDFARAAKVISGKELSPECVWLVFKMFDRGADGRLEHDELIE 418
            K  T+S+ D ALTLVS   P ++  +L RVQ +      I   +    H  ++ H  D++ A  +    +    VT  DF RAA V+SG ELS   V L F++FD  A+G L+  EL +
Sbjct:  261 KEQTMSVHDFALTLVSCFDPDKLSPYLERVQELNASEGVITWEEFFAFHFNVQSHLPDIKLAFEL----TGADEVTEADFIRAAHVVSGVELSSPVVQLAFRIFDDDANGTLDQSELFK 375          
BLAST of mRNA_E_fasciculatus_S2_contig7546.15710.1 vs.
Match: Calciumbinding (atopy-related autoantigen n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AS55_PLAHL)

HSP 1 Score: 68.2 bits (165), Expect = 1.130e-10
Identity = 40/119 (33.61%), Postives = 62/119 (52.10%), Query Frame = 2
Query:   62 KNDTISMADLALTLVSTCHPREMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTSTDFARAAKVISGKELSPECVWLVFKMFDRGADGRLEHDELIE 418
            K  ++S+ D ALTL+S   P ++P +L RVQA+ +    +   D    H  ++ +  D++ AL +         +   DF RA +V SG ELS   V L F++FD  A G L   EL++
Sbjct:  305 KQQSMSVHDFALTLISCFDPEKLPPYLERVQALTESDGAVTWDDFFTFHFNVQSNLTDIKAALELIGVDE----IKEADFTRAVRVASGTELSSPVVRLAFRIFDENASGTLNQSELLK 419          
BLAST of mRNA_E_fasciculatus_S2_contig7546.15710.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGG9_BRELC)

HSP 1 Score: 67.8 bits (164), Expect = 1.500e-10
Identity = 39/119 (32.77%), Postives = 65/119 (54.62%), Query Frame = 2
Query:   62 KNDTISMADLALTLVSTCHPREMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTSTDFARAAKVISGKELSPECVWLVFKMFDRGADGRLEHDELIE 418
            K  T+S+ D ALTL+S   P+++P +L RVQA+      +   +    H  ++ +  D++ A  +    +    +T  +F RAA+++SG ELS   V L F++FD   +G L+  EL E
Sbjct:  276 KQQTVSVHDFALTLISGHDPKKLPPYLDRVQALNACDDVVTWDEFCTFHFNVQHNLPDIKLAFEL----TGADEITEAEFIRAARIVSGVELSSPVVELAFRIFDENGNGTLDRSELFE 390          
BLAST of mRNA_E_fasciculatus_S2_contig7546.15710.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI39_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.820e-10
Identity = 39/122 (31.97%), Postives = 66/122 (54.10%), Query Frame = 2
Query:   53 SRYKNDTISMADLALTLVSTCHPREMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTSTDFARAAKVISGKELSPECVWLVFKMFDRGADGRLEHDELIE 418
            S    + +S+ D A+TLVS   P  +  +L R+QA+   ++ +   D    H  ++ + +D++ A  +   A     +T  DF RAA+V+SG ELS   V L F++FD   +G L+  EL++
Sbjct:  286 SAKHQEVVSVHDFAITLVSCFDPERLAPYLERLQALNASQELVTWDDFYKFHFNVQSNLEDIKLAFDLIGAAE----ITEADFIRAARVVSGVELSFPVVQLAFRVFDGNDNGTLDQTELLK 403          
BLAST of mRNA_E_fasciculatus_S2_contig7546.15710.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C250_HYAAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.420e-9
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 2
Query:   62 KNDTISMADLALTLVSTCHPREMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTSTDFARAAKVISGKELSPECVWLVFKMFDRGADGRLEHDELIE 418
            K  T+S+ D ALTL+S   P ++P FL RVQA+      +   +    H  + ++  D++ A  + +KA     +T  DF RAA ++SG ELS   V L F +F   ADG L+  EL +
Sbjct:  317 KQQTMSVHDFALTLISHLDPDQLPPFLERVQALNASHGVVLWAEFCAFHFTVRNYLPDIKLAFEL-TKAQ---VITEADFIRAAHIVSGVELSFPVVQLAFHIF-YNADGALDRSELFK 430          
BLAST of mRNA_E_fasciculatus_S2_contig7546.15710.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZW7_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 6.350e-9
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = 2
Query:   74 ISMADLALTLVSTCHPREMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTSTDFARAAKVISGKELSPECVWLVFKMFDRGADGRLEHDELIE 418
            IS+ D A+TLVS   P  +  +L RV+A+    + +   D    H  ++++  D+  A  +         +T  DF RAA+V+SG ELS   V L F++FD   +G L+  EL++
Sbjct:  320 ISVHDFAITLVSGFDPDRLAPYLERVEALNASEELVTWEDFYKFHANVQNNLADIXLAFDLTHAEE----ITEADFIRAARVVSGVELSFPVVQLAFRVFDSNENGTLDQSELLK 430          
BLAST of mRNA_E_fasciculatus_S2_contig7546.15710.1 vs.
Match: EF-hand (domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NKW5_PHYIT)

HSP 1 Score: 60.5 bits (145), Expect = 5.540e-8
Identity = 38/112 (33.93%), Postives = 60/112 (53.57%), Query Frame = 2
Query:   62 KNDTISMADLALTLVSTCHPREMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTSTDFARAAKVISGKELSPECVWLVFKMFDRGADGRL 397
            +  T+S+ D ALTLVS   P ++P +L RV  +      +   +  + H  ++ +  D++ A  +    +    +T  DF RAA+V+SG ELS   V L F++FD   DGRL
Sbjct:  298 QQQTMSVHDFALTLVSCFDPEKLPPYLDRVHELNASEGVVTWDEFFMFHFNVQSNLPDIKLAFEL----TGADEITEADFIRAARVVSGVELSSPVVQLAFRIFDE--DGRL 403          
BLAST of mRNA_E_fasciculatus_S2_contig7546.15710.1 vs.
Match: EF-hand (domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2HK38_PHYPR)

HSP 1 Score: 58.5 bits (140), Expect = 2.620e-7
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 2
Query:   71 TISMADLALTLVSTCHPREMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTSTDFARAAKVISGKELSPECVWLVFKMFDRGADGRL 397
            T+S+ D ALTL+S   P ++P +L RVQA+      +   +    H  ++ +  D++ A  +    +    +T  DF RAA V+SG ELS   V L F++FD   DG+L
Sbjct:  323 TMSVHDFALTLISCFDPEKLPPYLDRVQALNASDGVVTWDEFFEFHFNVQSNLPDIKLAFEL----TGADEITEADFIRAAHVVSGVELSSPVVQLAFRIFDE--DGKL 425          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7546.15710.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
EF-hand8.510e-8195.35domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized3.290e-1134.45protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A3... [more]
Uncharacterized7.860e-1136.13protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZS... [more]
Calciumbinding1.130e-1033.61atopy-related autoantigen n=1 Tax=Plasmopara halst... [more]
Uncharacterized1.500e-1032.77protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]
EF-hand2.820e-1031.97domain-containing protein n=1 Tax=Pythium brassicu... [more]
EF-hand3.420e-936.13domain-containing protein n=1 Tax=Hyaloperonospora... [more]
Uncharacterized6.350e-933.04protein n=1 Tax=Pythium insidiosum TaxID=114742 Re... [more]
EF-hand5.540e-833.93domain-containing protein n=2 Tax=Phytophthora inf... [more]
EF-hand2.620e-734.86domain-containing protein n=14 Tax=Phytophthora Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7546contigE_fasciculatus_S2_contig7546:1428..3865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size420
Hectar predicted targeting categoryother localisation
Exons3
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842416.102432-CDS-E_fasciculatus_S2_contig7546:1427..16051696842416.102432-CDS-E_fasciculatus_S2_contig7546:1427..1605Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7546 1428..1605 +
1696842416.1134565-CDS-E_fasciculatus_S2_contig7546:2393..25071696842416.1134565-CDS-E_fasciculatus_S2_contig7546:2393..2507Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7546 2394..2507 +
1696842416.1267262-CDS-E_fasciculatus_S2_contig7546:3737..38651696842416.1267262-CDS-E_fasciculatus_S2_contig7546:3737..3865Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7546 3738..3865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7546.15710.1prot_E_fasciculatus_S2_contig7546.15710.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7546 1428..3865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7546.15710.1

>prot_E_fasciculatus_S2_contig7546.15710.1 ID=prot_E_fasciculatus_S2_contig7546.15710.1|Name=mRNA_E_fasciculatus_S2_contig7546.15710.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=140bp
GGRQGRRRRRGRRCGVVEPVQERHHLDGRPRAHPGLHVPPERDAGVLGEG
SSHPEEAEADSSQGCSSPARGSRGPRTGPGGRPRHVQQGVVRRGGYLDGL
RARRESDLRQGAQPGVRVAGVQDVRPRGRRPPGARRADRG
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mRNA from alignment at E_fasciculatus_S2_contig7546:1428..3865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7546.15710.1 ID=mRNA_E_fasciculatus_S2_contig7546.15710.1|Name=mRNA_E_fasciculatus_S2_contig7546.15710.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2438bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7546:1428..3865+ (Ectocarpus fasciculatus EfasUO2)
GGAGGCCGCCAAGGACGGAGGCGGCGGAGAGGGCGAAGGTGCGGGGTGGT GGAGCCGGTACAAGAACGACACCATCTCGATGGCCGACCTCGCGCTCACC CTGGTCTCCACGTGCCACCCGAGAGAGATGCCGGTGTTCTTGGCGAGGGT TCAAGCCATCCAGAAGAAGCGGAAGCAGGTGTGTAGGTGGGATTGGCAGG TCGTCCGTTTTTGTGGCTGGTGGTGGTGGTTGTGTTGTCGTACGATCGGT CGGTGGACGTCGAGCTGACGGTGTTATGTACCCAAACGCCTGCCCGCCTG CCTGCCTGCCTTTTGTGGGCAACAGTTGCGACCCGGTTTTCAGAGCGTCG AGACTGGTATGGTGCATTGCACGGGGAGTGCTTTATTTTTGTTGCCCGCG TCTCCCTCCCCCCGCTCTCCCTGTCTCTGGTTCGAGGTCTGTCTGTCTGT CTGTCTGGCGGTCTGAGTCTCTCTTTCCTAATTTCGTGGACGATCCATTC GAAGGCGTCGGCTGAGCGTCGCCCAGCCTTGGCGCGCCTTCGCCCATGTA CAGTTTGTCCAGACTACCCCTGCCTCTTCGATGCTTCTTTTCGTGCCTGC CCTGCTTTTTTTGCGTGGTTCTCGTGTCTTCTTGCTTGGCAGGGTGGTCC GGCTTTGTTGTTGCTGACATTACTTTTTTCGTGTTTGCCAATCGGATAAG CGTTTTCTCGTGCAATATTTCCAGCGATGCGCCCCGACCCGCACCACCCT GCTCCCCCGTCTTCATTGTGCTGTGTGTGCATTTGATGCATGGTTTGGTT TCGTTTCACTGCTTTCGCAACACGCCCCCTGTTCCAGGTTTTCATGGTGC TGTGTGTGGTATCCTCTTTAGTTGCGTTTCGCTATTTTTGCTACACTCCC CCCCCGTCACACCACACCCTGCTGTTCTGTGTTCTGTGTGTGATTGCTGT TTTTGCTACTACACAGATTCCTCTCAGGGATGCTCTTCTCCTGCACGAGG TTCTCGAGGACCACGCACAGGACCTGGAGGACGCCCTCGGCATGTACAGC AAGGCGTCGTCCGGCGGGGCGGTTACCTCGGTGAAGGGCCGCACTAAACT ACTATATAATAAATAGCTGCTTTGTTGTGGTCTTGCCATTCCCGAAACGG CGTATTGTAGTCCGCGCAGGTTGTTCTGAGCAAAGCAAACATATTGGATG AAGTATAGAATCGCTATTGTAAGTTGGAGTTGAGGTTAGGGTTAGGGTTA GGGTCTGCGTACCCCCTGCTTGGTTATACTTGGTGATAAACGTAGATAGT TTCTTCGCGCAGGTAATCCTCCCCAAGTATTGTACCTATTTCGAACGTTG CGTAGGATACGGACCGAGATCGGAACGGTTTTTGATGTGAAGACAGCAAC AACAAAAACAACAACAACAACAACTCTCCCCAAATACCTATTGTACGTAT GTTGAATGCGTAGGATACCACACACCCCTTGACCGAATACTCTGTACGAA ACACGGTGACGGTGCGCTCGAAAATGGCGGGAGGTGTTGGGTTCCTGTGC TGCGGCGTTGTAAAAACGTCTCGTGGAGAGCCTTTCGGAGAGCGTATCCT CAATCCTTCATGATTGAACTTGCGACATATTCTTCGTCGTGGAGTGGTCT TAATGATTGCGACATCAGTAGTCGGCCTTTGGAAACCGAATCGGTCGAGG GTGTGTGGTACCTGAATGCAACCTACGGTTACATATTTTTGAGTGGTCGT TGGCCTGTGATCACGGAAATCGTCCGCATCAGTTGGACAGGTACAATACG TGCATATTTAGAAGGTGGTACTGAACATCCATAGACCGCAACCTTTTTTT GTGTGTGAAGACGACTATTGATATAGAAGAGGAGCAGGCTTTGGAAGGAT ACCGCCTATCTATGTTGTTTGTGTTGCTCTCTATTCTGGGGACCACGCTC ATGTGTCTCGGTGGACCAGTTGGGGGGGGGGGGGGCACCTTCGTGTCCCA GATCGTGGAATGGGCCACTCCCGGTTTAGTGTGCTCCGGTGTGCGGTTGC CAATTTGTTCTCATTATGCTTCCGAATTATAAGGATGATTCACCCGTCTT TTGTTTTCTCTTGAAGAGTAATTTCATTGCTCTACTCTGCTGCGACTGTA CTTGCCGAAAGCGTTGCTACGGGAAAAGCAAAACTATAGCAGTCACGCAC GTATCTACATAGGGACAACTCAAAAGAGTGATCCGTTCGATCTGATATTG ACTTCTCCCCCCCATCCCCCACCTCCGTCAAAATGATATTACGTCACAAA CACCACGCAGACGGACTTCGCGCGCGCCGCGAAAGTGATCTCCGGCAAGG AGCTCAGCCCGGAGTGCGTGTGGCTGGTGTTCAAGATGTTCGACCGCGGG GCCGACGGCCGCCTGGAGCACGACGAGCTGATCGAGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7546:1428..3865+

>mRNA_E_fasciculatus_S2_contig7546.15710.1 ID=mRNA_E_fasciculatus_S2_contig7546.15710.1|Name=mRNA_E_fasciculatus_S2_contig7546.15710.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=420bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7546:1428..3865+ (Ectocarpus fasciculatus EfasUO2)
GGAGGCCGCCAAGGACGGAGGCGGCGGAGAGGGCGAAGGTGCGGGGTGGT
GGAGCCGGTACAAGAACGACACCATCTCGATGGCCGACCTCGCGCTCACC
CTGGTCTCCACGTGCCACCCGAGAGAGATGCCGGTGTTCTTGGCGAGGGT
TCAAGCCATCCAGAAGAAGCGGAAGCAGATTCCTCTCAGGGATGCTCTTC
TCCTGCACGAGGTTCTCGAGGACCACGCACAGGACCTGGAGGACGCCCTC
GGCATGTACAGCAAGGCGTCGTCCGGCGGGGCGGTTACCTCGACGGACTT
CGCGCGCGCCGCGAAAGTGATCTCCGGCAAGGAGCTCAGCCCGGAGTGCG
TGTGGCTGGTGTTCAAGATGTTCGACCGCGGGGCCGACGGCCGCCTGGAG
CACGACGAGCTGATCGAGGC
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