mRNA_E_fasciculatus_S2_contig7537.15704.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7537.15704.1 vs.
Match: PUM-HD (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3P5_9PHAE) HSP 1 Score: 292 bits (747), Expect = 4.570e-91 Identity = 193/255 (75.69%), Postives = 197/255 (77.25%), Query Frame = 1
Query: 1 QVANQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVVVSALRDATVPLCLDTNGNHVVQRLLQHLAPTDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPIGKV------AMLSMQKFSSNVIEKCMDRASEEMIVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFPEV 747
QVA QMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVVVSAL+DATVPLCLDTNGNHVVQRLLQHLAPTDNA XXXXXXXXXXXXXXXXXXXXXXXXXX VP+GKV AMLSMQKFSSNVIEKCMDRASEE+IVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFP +
Sbjct: 239 QVAGQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVVVSALKDATVPLCLDTNGNHVVQRLLQHLAPTDNAFXXXXXXXXXXXXXXXXXXXXXXXXXXDAATVEQSRLLVSQVSKHALQLMQDPYGNYVVQYVLGICSHDEAVALVNVPLGKVGNEKMVAMLSMQKFSSNVIEKCMDRASEEIIVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFPSI 493
BLAST of mRNA_E_fasciculatus_S2_contig7537.15704.1 vs.
Match: PUM-HD (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB6_ECTSI) HSP 1 Score: 197 bits (501), Expect = 2.250e-58 Identity = 102/106 (96.23%), Postives = 102/106 (96.23%), Query Frame = 1
Query: 439 VPIGKVAMLSMQKFSSNVIEKCMDRASEEMIVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFPEVSLD 756
VPIGKVAMLSMQKFSSNVIEKCMDRASEEMIVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFP D
Sbjct: 73 VPIGKVAMLSMQKFSSNVIEKCMDRASEEMIVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFPVARKD 178
BLAST of mRNA_E_fasciculatus_S2_contig7537.15704.1 vs.
Match: PUM-HD (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTA7_9STRA) HSP 1 Score: 169 bits (428), Expect = 2.070e-42 Identity = 136/256 (53.12%), Postives = 174/256 (67.97%), Query Frame = 1
Query: 4 VANQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVVVSALRDATVPLCLDTNGNHVVQRLLQHLAPTDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPIGKVAMLSMQKFSSNVIEKCMDRASEEMIVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFPEVSLDEDVPA 771
V +++V +NLHGTRSVQ+I+EVC+ T QVA + +ALR V LC+D NGNHVVQR LQHL D A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P+G++ LS+QK+SSNV+EKC+++ASE++ Y+ E+ P ++ L+QDQYANYV+Q+ L +A L LVE++R HL MRN++GGRR+L++I+KRFP V L D+ A
Sbjct: 885 VQDELVSGALNLHGTRSVQRILEVCK-TKDQVATITAALRHDVVRLCVDANGNHVVQRALQHLGSEDRAFIFEAVSQACLEVSTHRHGCCVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCAADEIRPVTSCPLGRITSLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCAPGNIKHLMQDQYANYVVQRALSVATHSRGLHLVEAVRPHLHAMRNTAGGRRILSKITKRFPNVDLGADMMA 1139
BLAST of mRNA_E_fasciculatus_S2_contig7537.15704.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV53_9STRA) HSP 1 Score: 144 bits (363), Expect = 1.050e-36 Identity = 86/253 (33.99%), Postives = 125/253 (49.41%), Query Frame = 1
Query: 4 VANQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVVVSALRDATVPLCLDTNGNHVVQRLLQHLAPTDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPIGKVAMLSMQKFSSNVIEKCMDRASEEMIVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFPEVSLDED 762
V N +V+A +NLHGTRSVQKI+E CR QV VV AL + LCLD NGNHVVQ+ +Q L +G V LS+QKFSSNV+EKC+++A++ ++ + E+++P+++ LL DQ+ANYV+Q++L +AP A LV++I+ HL +RN+SGGRR++ +I KRFP+ L +D
Sbjct: 24 VKNHLVKASLNLHGTRSVQKILEHCRTNDEQVKVVREALEPHILQLCLDGNGNHVVQKGVQCLGVDQRDFLYRAVGQSLPAVACHRHGCCVLQRCLDSASPEQRRGLIAVVVVNALQLMQDAYGNYVVQYVLDIGTQLDAWSVCEKCLGHVHNLSIQKFSSNVVEKCLEKANDRLLNLMISEISNPSSLAELLNDQFANYVVQRSLVVAPHAVATELVDNIKPHLPQLRNTSGGRRIIAKILKRFPKTDLGDD 276
BLAST of mRNA_E_fasciculatus_S2_contig7537.15704.1 vs.
Match: PUM-HD (domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7AAA0_9STRA) HSP 1 Score: 145 bits (366), Expect = 4.920e-36 Identity = 88/256 (34.38%), Postives = 123/256 (48.05%), Query Frame = 1
Query: 1 QVANQMVEAGMNLHGTRSVQKIIEVCRGT--PSQVAVVVSALRDATVPLCLDTNGNHVVQRLLQHLAPTDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPIGKVAMLSMQKFSSNVIEKCMDRASEEMIVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFPEVSLDED 762
QVA+ +V A +NLHGTRSVQK++E+C + P V ++V AL+D V LC+D+NGNHV+QR LQ++ T N +G V LS+QKFSSNVIEKC++ A + + +V E+ M +LQDQYANYV+Q+ L +A + L LV ++R HL M+N+ GGRR+ RI KRFP + + D
Sbjct: 110 QVAHHLVAAALNLHGTRSVQKVVEICSSSSMPQLVELIVDALKDDAVRLCIDSNGNHVIQRALQYMPATYNQFVFDAVSAECTVVGTHRHGCCVLQRCVDAANPAQRREVIAQVEKHAMKLMQDPYGNYVVQYVLDACSTADVVGVMTKCVGHVLELSIQKFSSNVIEKCLELAPDYLCQTFVREIIASPRMHRMLQDQYANYVVQRALSVASDENCLDLVTAMRPHLTSMKNTQGGRRIQARILKRFPHLDVGWD 365
BLAST of mRNA_E_fasciculatus_S2_contig7537.15704.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9G3_PYTOL) HSP 1 Score: 149 bits (377), Expect = 9.560e-36 Identity = 91/269 (33.83%), Postives = 128/269 (47.58%), Query Frame = 1
Query: 4 VANQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAV---------------VVSALRDATVPLCLDTNGNHVVQRLLQHLAPTDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPIGKVAMLSMQKFSSNVIEKCMDRASEEMIVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFPEVSLDEDV 765
V+ +V A +NLHGTRSVQK++EVC + V + +V AL+D V LC+D+NGNHV+QR LQ + P N P+G V LS+QKFSSNVIEKC+++A ++ +Y+ E+ M+ +LQDQ+ANYV+Q+ L +A D L LV++IR HLV M+N+SGGRR+ RI KRFP + L+ D+
Sbjct: 639 VSGNLVAAALNLHGTRSVQKVVEVCATSAEVVELDSDGNELRRVNLPDLIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCKECTTVGTHRHGCCVLQRCLDAANDTQKREVITQVEKQAMKLMQDPYGNYVVQYVLDSCTAEEAYGVIVKPLGNVFELSIQKFSSNVIEKCLEKAPPVVLTQYIDEITTCPKMQKMLQDQFANYVVQRALCVASEDQCLALVKAIRPHLVAMKNTSGGRRITARILKRFPHMDLNLDM 907
BLAST of mRNA_E_fasciculatus_S2_contig7537.15704.1 vs.
Match: PUM-HD (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG61_9PHAE) HSP 1 Score: 149 bits (375), Expect = 1.870e-35 Identity = 92/254 (36.22%), Postives = 124/254 (48.82%), Query Frame = 1
Query: 4 VANQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVVVSALRDATVPLCLDTNGNHVVQRLLQHLAPTDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPIGKVAMLSMQKFSSNVIEKCMDRASEEMIVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFPEVSLDEDV 765
VA++M EA +NLHGTR VQK++E+CR T +Q AV+ +L + V L LD NGNHVVQR LQH+ N P+G VA LS QKFSSNV+E C++RA E+ K+V ELA +R L+ DQYANYV+Q+ L +A + L LV +IR HL M+++S GRR+ +I KR+P V L E++
Sbjct: 858 VADRMPEAAVNLHGTRCVQKVVELCR-TDAQAAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITASLVQVAIHRHGCCVLQRCLDAAGPNLRIKLIEEVARNGLRLMQDPFGNYVVQYVLKTCSREETYMLCSAPLGHVASLSTQKFSSNVMEACLERALPEVQSKFVEELAQQGRIRELILDQYANYVVQRALTVASNEEGLKLVNAIRPHLHSMQSTSSGRRIAAKIIKRYPTVDLGEEI 1110
BLAST of mRNA_E_fasciculatus_S2_contig7537.15704.1 vs.
Match: PUM-HD (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX6_ECTSI) HSP 1 Score: 147 bits (370), Expect = 5.190e-35 Identity = 91/254 (35.83%), Postives = 123/254 (48.43%), Query Frame = 1
Query: 4 VANQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVVVSALRDATVPLCLDTNGNHVVQRLLQHLAPTDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPIGKVAMLSMQKFSSNVIEKCMDRASEEMIVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFPEVSLDEDV 765
V ++M EA +NLHGTR VQK++E+CR T +Q AV+ +L + V L LD NGNHVVQR LQH+ N P+G VA LS QKFSSNV+E C++RA E+ K+V ELA +R L+ DQYANYV+Q+ L +A + L LV +IR HL M+++S GRR+ +I KR+P V L E++
Sbjct: 470 VTDRMPEAAVNLHGTRCVQKVVELCR-TDAQAAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITASLVQVAIHRHGCCVLQRCLDAAGPNLRIKLIEEVARNGLRLMQDPFGNYVVQYVLKTCSREETYMLCSAPLGHVASLSTQKFSSNVMEACLERALPEVQSKFVEELAQQGRIRELILDQYANYVVQRALTVANNEEGLKLVNAIRPHLHSMQSTSSGRRIAAKIIKRYPTVDLGEEI 722
BLAST of mRNA_E_fasciculatus_S2_contig7537.15704.1 vs.
Match: PUM-HD (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB5_ECTSI) HSP 1 Score: 136 bits (343), Expect = 2.880e-34 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1
Query: 1 QVANQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVVVSALRDATVPLCLDTNGNHVVQRLLQHLAPTDNA 210
QVA QMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVVVSAL+DATVPLCLDTNGNHVVQRLLQHLAPTDNA
Sbjct: 138 QVAGQMVEAGMNLHGTRSVQKIIEVCRGTPSQVAVVVSALKDATVPLCLDTNGNHVVQRLLQHLAPTDNA 207
BLAST of mRNA_E_fasciculatus_S2_contig7537.15704.1 vs.
Match: Pumilio-family (RNA binding repeat domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SFT8_PHYIN) HSP 1 Score: 141 bits (356), Expect = 9.220e-34 Identity = 90/285 (31.58%), Postives = 126/285 (44.21%), Query Frame = 1
Query: 4 VANQMVEAGMNLHGTRSVQKIIEVC-------------------------------RGTPSQVAVVVSALRDATVPLCLDTNGNHVVQRLLQHLAPTDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPIGKVAMLSMQKFSSNVIEKCMDRASEEMIVKYVHELADPAAMRPLLQDQYANYVIQKTLQLAPRDAALTLVESIREHLVLMRNSSGGRRMLTRISKRFPEVSLDEDV 765
V++ +V A +NLHGTRSVQK++EVC R T S ++V AL+D V LC+D+NGNHV+QR LQ + P N P+G + LS+QKFSSNVIEKC+++A E + KY+ E+ M +LQDQ+ANYV+Q+ L + + L LV++IR HL M+N+SGGRR+ RI KRFP + + D+
Sbjct: 156 VSSNLVAAALNLHGTRSVQKVVEVCATSSSVIEEDFDEEEEGEEYGYEERPEGGKGRRTTSLPDLIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCKECTTVGTHRHGCCVLQRCLDAANKTQKAEVIAQVERQAMKLMQDPYGNYVVQYVLDSCTAEEAFGVIMKPLGHIYELSVQKFSSNVIEKCLEKAPERVRQKYIAEITSCPKMNKMLQDQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKNTSGGRRITARILKRFPNMDISMDM 440 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7537.15704.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7537.15704.1 >prot_E_fasciculatus_S2_contig7537.15704.1 ID=prot_E_fasciculatus_S2_contig7537.15704.1|Name=mRNA_E_fasciculatus_S2_contig7537.15704.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=265bp MVEAGMNLHGTRSVQKIIEVCRGTPSQVAVVVSALRDATVPLCLDTNGNHback to top mRNA from alignment at E_fasciculatus_S2_contig7537:2610..7330- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7537.15704.1 ID=mRNA_E_fasciculatus_S2_contig7537.15704.1|Name=mRNA_E_fasciculatus_S2_contig7537.15704.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4721bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7537:2610..7330- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7537:2610..7330- >mRNA_E_fasciculatus_S2_contig7537.15704.1 ID=mRNA_E_fasciculatus_S2_contig7537.15704.1|Name=mRNA_E_fasciculatus_S2_contig7537.15704.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=795bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7537:2610..7330- (Ectocarpus fasciculatus EfasUO2)back to top |