mRNA_E_fasciculatus_S2_contig7493.15656.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7493.15656.1
Unique NamemRNA_E_fasciculatus_S2_contig7493.15656.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7493.15656.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7493contigE_fasciculatus_S2_contig7493:4329..6072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size262
Hectar predicted targeting categoryother localisation
Exons4
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842411.2731094-CDS-E_fasciculatus_S2_contig7493:4328..44041696842411.2731094-CDS-E_fasciculatus_S2_contig7493:4328..4404Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7493 4329..4404 -
1696842411.2844203-CDS-E_fasciculatus_S2_contig7493:5122..51941696842411.2844203-CDS-E_fasciculatus_S2_contig7493:5122..5194Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7493 5123..5194 -
1696842411.2959106-CDS-E_fasciculatus_S2_contig7493:5579..56511696842411.2959106-CDS-E_fasciculatus_S2_contig7493:5579..5651Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7493 5580..5651 -
1696842411.307002-CDS-E_fasciculatus_S2_contig7493:6031..60721696842411.307002-CDS-E_fasciculatus_S2_contig7493:6031..6072Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7493 6032..6072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7493.15656.1prot_E_fasciculatus_S2_contig7493.15656.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7493 4329..6072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7493.15656.1

>prot_E_fasciculatus_S2_contig7493.15656.1 ID=prot_E_fasciculatus_S2_contig7493.15656.1|Name=mRNA_E_fasciculatus_S2_contig7493.15656.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=87bp
SLSQSENFDGLGFRSMHLNPLTTLAAGVFDSLTSLTGLYLSHNDLAALPA
GIFDSLKDLQDLDLGSNELTTLPAGIFNSLTSLTDL*
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mRNA from alignment at E_fasciculatus_S2_contig7493:4329..6072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7493.15656.1 ID=mRNA_E_fasciculatus_S2_contig7493.15656.1|Name=mRNA_E_fasciculatus_S2_contig7493.15656.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1744bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7493:4329..6072- (Ectocarpus fasciculatus EfasUO2)
AGCTTGTCACAGAGTGAAAACTTTGACGGCCTTGGCTTTCGGTGAGTTGG
ACTTCGCGCGTCTGCATGGCCGGCAGGTCGCGCATATGTATTCGACTCGC
TCGTTTAACGGTAGGGAATGAGCGTCGATTTTCTAACCCTTTGCTGTAGA
GTGGGGTCGTCGTGAAAAATGCGTATGGCGACCACGATACTTCATGCGGT
CTGTCTGGAAGGAGGACTTCATGCAGTCTGTCTGGAAGGAGGTTGACTGT
ACGGTGCGCCACGTTGCGTAAATCCGCCACTGCGTCAATGTTTGACGATC
GAAAGTCCTCCAAACGACCAAAGCCCATTCATGACCGAGATTCAACAACC
GGAGCGGGTGGTACTTGCTCCTCCTTCGTCTCCCTGTCTGGACCTGTCTC
ACTCTCCCGACGAACCCACAGGAGCATGCACCTGAATCCGCTGACGACGT
TGGCTGCTGGCGTCTTCGATTCTCTCACGTCCCTGACGGGCCTGTAAGTG
TCAGGCATGTGAATTTCGCCGGTAGAGGATGCCGATGGGGGTAGCAGCCG
ACATGTCGATGAAAGGAGGTGCTTTGGGAGGTTGAATGATGATTGTCGCG
ACCTTCTCGGGTTGTTGGAGATCTGGACCTGTCTCATCCTCCCGACGAAC
GCACAAGACACTGAACGGTAACGCTCTGACAAAGTCGCCTGCTGGGATCT
TCAATTCTCTCACGTCCCTACAATACCTGTAAGTGTCAGGCATGTGAATG
TCGCCGGTAGAGGATGCCGATGGGAGTTGGGGCCGGCATGTCGATGAAAG
GAGGTGCTTTGGCAGGTCGAATGATGATTGTCACGACCTTCGGGTTGTTT
GAGATCTGGACCTGTCTCAAACCCACAGGTACCTTAGCCATAATGATCTG
GCGGCGCTTCCTGCTGGGATCTTCGATTCTCTCAAGGACCTACAAGACCT
GTAAGTGTCAGGGAGATGAATGTCGCCGGTAGAGGATGCCGATGGGGGTA
GGGGCCGACATGGCGATGAAAGGAGGTGTTTTGGGCGGTGGAATGATGAT
TATCACGACCTTCTCGGTTTGTATGATGTCTGGACCTGTCTCATCCTCCC
GACGAACGCACAAGAGAGTGAACGGTAACGCTCTGACAAAGCCGCCTGCT
GGGATAATCGATTCTGCCGGGGCTTTGGGTTTACGGTTAAGTGTGAGGCA
GTTGGATGTCGCCGGTACGATGTTCATGGGGTTGGACGATGAACGAAGAT
GTTCCAGCGCAGCTCCCGTACTCAGCTTGTCACAGAGTGAAAACTTTGGC
GGCCTTGGCTTTCGGTGAGTTGGACTTCGTGCGTCTGCATGGCCGGCAGG
TCGCGCATATGTATTCGACTCGCTTGTTCAACTGTAGGGAATGAGCGTCG
ATTTTCTAACCCTTTTCTGTAGAATGGGGTCGTCGTGAAAAATGCGTATG
GCGACCACGATACTTCATGCAGTCTGTCTGGAAGCAGGTTGACTGTACGG
TGTGCCAAGTTGCGTTCACCCGCCACTGCGTTAATGTTTGACAATCGAGA
GCCCCTCAGCGAGCAAAGCCCATTCATGACCGAGATTCAACAACCGACGC
GGGTGGTACTTGCTCCTCCTTCGTCTCCCTATCTGGACCTGTCTCACACT
CTCCCGACGAACCCACAGGGACCTTGGCAGTAATGAGCTGACGACGCTTC
CTGCTGGGATCTTCAATTCTCTCACGTCCCTGACGGACCTGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7493:4329..6072-

>mRNA_E_fasciculatus_S2_contig7493.15656.1 ID=mRNA_E_fasciculatus_S2_contig7493.15656.1|Name=mRNA_E_fasciculatus_S2_contig7493.15656.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=261bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7493:4329..6072- (Ectocarpus fasciculatus EfasUO2)
AGCTTGTCACAGAGTGAAAACTTTGACGGCCTTGGCTTTCGGAGCATGCA
CCTGAATCCGCTGACGACGTTGGCTGCTGGCGTCTTCGATTCTCTCACGT
CCCTGACGGGCCTGTACCTTAGCCATAATGATCTGGCGGCGCTTCCTGCT
GGGATCTTCGATTCTCTCAAGGACCTACAAGACCTGGACCTTGGCAGTAA
TGAGCTGACGACGCTTCCTGCTGGGATCTTCAATTCTCTCACGTCCCTGA
CGGACCTGTAA
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