mRNA_E_fasciculatus_S2_contig7416.15591.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7416.15591.1
Unique NamemRNA_E_fasciculatus_S2_contig7416.15591.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7416.15591.1 vs.
Match: JmjC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA0_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 1.230e-106
Identity = 174/184 (94.57%), Postives = 178/184 (96.74%), Query Frame = 1
Query:    1 MRPSGGAFAVGLASLGLASTHAFTGPALTTARSGSSSSSRSRVVASTAVSDSAVAPTAASAADEQYSPPQLVAALREASAQSPPLGVEGVFSAMARDDVFLNELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGSTGWRMAPVSTPRGKSFDDAKLRFDDVKSALKEKSGT 552
            MRPS GAFAVGLASLG ASTHAFTGPALTTARSG SSSSR RVVASTAVSD+AVAP AASAADEQYSPPQLVAALRE SAQSPPLGVEG+FSAMARDDVF+NELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGSTGWRMAPVSTPRGKSF+DAKLRFDDVKSALKEKSGT
Sbjct:    1 MRPSRGAFAVGLASLGFASTHAFTGPALTTARSGCSSSSRWRVVASTAVSDTAVAPAAASAADEQYSPPQLVAALRETSAQSPPLGVEGIFSAMARDDVFVNELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGSTGWRMAPVSTPRGKSFEDAKLRFDDVKSALKEKSGT 184          
BLAST of mRNA_E_fasciculatus_S2_contig7416.15591.1 vs.
Match: Bifunctional (lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT6_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 9.940e-53
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 1
Query:  280 MARDDVFLNELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGSTGWRMAPVSTPRGKSFDDAKLRFDDVKSALKEKSGT 552
            MARDDVF+NELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGSTGWRMAPVSTPRGKSF+DAKLRFDDVK+ALKEKSGT
Sbjct:    1 MARDDVFVNELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGSTGWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGT 91          
BLAST of mRNA_E_fasciculatus_S2_contig7416.15591.1 vs.
Match: Bifunctional (lysine-specific demethylase and histidyl-hydroxylase (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WNN0_EMIHU)

HSP 1 Score: 92.4 bits (228), Expect = 1.230e-19
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1
Query:  271 FSAMARDDVFLNELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGSTGWRMAPVSTPRGKSFDDAKLRFDDVKSAL 534
            F  +ARD  F+ ++W +KP      +  +AG +TLDDV++AVDSDF+EAG G       GW+MAPVS PRG S++DAKLR+ DV + +
Sbjct:   82 FEVLARDADFVADVWARKPLLVAEPIAGVAGSFTLDDVREAVDSDFLEAGLGV-PTAEGGWKMAPVSQPRGSSYEDAKLRYVDVAAGI 168          
BLAST of mRNA_E_fasciculatus_S2_contig7416.15591.1 vs.
Match: JmjC (domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BJP6_EMIHU)

HSP 1 Score: 92.4 bits (228), Expect = 2.780e-19
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1
Query:  271 FSAMARDDVFLNELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGSTGWRMAPVSTPRGKSFDDAKLRFDDVKSAL 534
            F  +ARD  F+ ++W +KP      +  +AG +TLDDV++AVDSDF+EAG G       GW+MAPVS PRG S++DAKLR+ DV + +
Sbjct:   62 FEVLARDADFVADVWARKPLLVAEPIAGVAGSFTLDDVREAVDSDFLEAGLGV-PTAEGGWKMAPVSQPRGSSYEDAKLRYVDVAAGI 148          
BLAST of mRNA_E_fasciculatus_S2_contig7416.15591.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CTT2_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 2.000e-17
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 1
Query:  271 FSAMARDDVFLNELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGSTGWRMAPVSTPRGKSFDDAKLRFDDVKSALK 537
            F ++AR   F  +++ ++P      +P +A  +TLD +++AVDSDF+EAGRG    G  GW+MAPVS PRG SF+DAK+R+ DV  A+K
Sbjct:   27 FLSLARSTEFARDIFARQPMLY-GGIPGVADSFTLDHLREAVDSDFLEAGRGIPDNG--GWKMAPVSKPRGSSFEDAKMRYVDVVEAMK 112          
BLAST of mRNA_E_fasciculatus_S2_contig7416.15591.1 vs.
Match: Bifunctional (lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSI8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.350e-17
Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  223 LREASAQSPPLGVEGVFSAM-ARDDVFLNELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGST--GWRMAPVSTPRGKSFDDAKLRFDDVKSALKEKSGT 552
            L EA      L ++ VF A+ A    FL + WQ+ P F   S+P LA  +T+ D+++A+  +F+ AGRG F + S   GW+MA V   RG SF++AKLR +DV++ALK++SGT
Sbjct:   81 LVEADTGCDKLDLKRVFEALTAPSSPFLAKYWQRAPCFTSTSIPCLAQAWTMADMEEAIAKEFLLAGRGFFEENSETGGWKMAAVGLARGSSFEEAKLRPEDVRAALKQRSGT 193          
BLAST of mRNA_E_fasciculatus_S2_contig7416.15591.1 vs.
Match: Bifunctional (lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYX3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.580e-17
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  235 SAQSPPLGVEGVFSAMARDDVFLNELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQ-GSTGWRMAPVSTPRGKSFDDAKLRFDDVKSALKEKSGT 552
            SAQ+ PL V   F A+A    F  ++WQ++PF      P++ G YT+ D+++AV+ DF+EAGRG   + G  GW+MA V   +GK+    K++ +DV+ AL ++SGT
Sbjct:   82 SAQATPLDVTAAFRALANTAQFGQDVWQQEPFVFSEGFPNMVGAYTMLDIEEAVEEDFLEAGRGLVDEDGRAGWQMARVG--KGKASSPKKMKVEDVRKALSQRSGT 186          
BLAST of mRNA_E_fasciculatus_S2_contig7416.15591.1 vs.
Match: Bifunctional (lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZE1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 9.410e-9
Identity = 27/66 (40.91%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  337 DASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGSTGWRMAPVSTPRGKSFDDAKLRFDDVKSAL 534
            + S  ++AG +T DD+ +A++ DF++A RG+ +    GW++  VSTPRG SF+DA++  ++V++AL
Sbjct:  167 EESASTIAGYFTFDDLAKALEEDFLDADRGS-TDNKKGWKVTAVSTPRGSSFEDARMTLEEVEAAL 231          
BLAST of mRNA_E_fasciculatus_S2_contig7416.15591.1 vs.
Match: Bifunctional (lysine-specific demethylase and histidyl-hydroxylase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MKV5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.180e-8
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 1
Query:  337 DASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGSTGWRMAPVSTPRGKSFDDAKLRFDDVKSAL 534
            D +L  L G +T DD+  A++ DF++A RG+ +    GW++  VSTPRG SF+DA++   +V++AL
Sbjct:   51 DETLSPLKGYFTYDDLATALEEDFLDADRGS-TDNKKGWKVTSVSTPRGSSFEDARMTLSEVETAL 115          
BLAST of mRNA_E_fasciculatus_S2_contig7416.15591.1 vs.
Match: Bifunctional (lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XAD1_DIALT)

HSP 1 Score: 62.8 bits (151), Expect = 3.010e-8
Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  313 WQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTF-SQGSTGWRMAPVSTPRGKSFDDAKLRFDDVKSAL 534
            WQ+ P    A  P   G +T+  +  AV+ +F++AG G + ++G  GW+M  V TPRG SF++AKL + +V++A+
Sbjct:   74 WQRAPLVTRALAPLADGYFTVAHLAAAVERNFLDAGLGVYDARGRAGWQMGRVGTPRGASFEEAKLTWAEVEAAM 148          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7416.15591.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
JmjC1.230e-10694.57domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Bifunctional9.940e-5396.70lysine-specific demethylase and histidyl-hydroxyla... [more]
Bifunctional1.230e-1948.86lysine-specific demethylase and histidyl-hydroxyla... [more]
JmjC2.780e-1948.86domain-containing protein n=1 Tax=Emiliania huxley... [more]
Hypothetical2.000e-1747.19protein (Fragment) n=1 Tax=Haptolina brevifila Tax... [more]
Bifunctional2.350e-1743.36lysine-specific demethylase and histidyl-hydroxyla... [more]
Bifunctional3.580e-1741.12lysine-specific demethylase and histidyl-hydroxyla... [more]
Bifunctional9.410e-940.91lysine-specific demethylase and histidyl-hydroxyla... [more]
Bifunctional2.180e-842.42lysine-specific demethylase and histidyl-hydroxyla... [more]
Bifunctional3.010e-838.67lysine-specific demethylase and histidyl-hydroxyla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7416contigE_fasciculatus_S2_contig7416:462..2916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score326.6
Seed ortholog evalue7.3e-87
Seed eggNOG ortholog2880.D7FYA0
Model size552
Hectar predicted targeting categorychloroplast
Exons4
EggNOG free text desc.Cupin superfamily protein
EggNOG OGs2CYFP@1,2S42U@2759
Ec32 ortholog descriptionSecreted cupin superfamily protein
Ec32 orthologEc-24_003250.1
Cds size552
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842404.5023162-CDS-E_fasciculatus_S2_contig7416:461..5991696842404.5023162-CDS-E_fasciculatus_S2_contig7416:461..599Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7416 462..599 -
1696842404.5153644-CDS-E_fasciculatus_S2_contig7416:821..9261696842404.5153644-CDS-E_fasciculatus_S2_contig7416:821..926Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7416 822..926 -
1696842404.5253623-CDS-E_fasciculatus_S2_contig7416:1680..18261696842404.5253623-CDS-E_fasciculatus_S2_contig7416:1680..1826Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7416 1681..1826 -
1696842404.5354319-CDS-E_fasciculatus_S2_contig7416:2753..29161696842404.5354319-CDS-E_fasciculatus_S2_contig7416:2753..2916Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7416 2754..2916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7416.15591.1prot_E_fasciculatus_S2_contig7416.15591.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7416 462..2916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7416.15591.1

>prot_E_fasciculatus_S2_contig7416.15591.1 ID=prot_E_fasciculatus_S2_contig7416.15591.1|Name=mRNA_E_fasciculatus_S2_contig7416.15591.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=184bp
MRPSGGAFAVGLASLGLASTHAFTGPALTTARSGSSSSSRSRVVASTAVS
DSAVAPTAASAADEQYSPPQLVAALREASAQSPPLGVEGVFSAMARDDVF
LNELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVEAGRGTFSQGSTG
WRMAPVSTPRGKSFDDAKLRFDDVKSALKEKSGT
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mRNA from alignment at E_fasciculatus_S2_contig7416:462..2916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7416.15591.1 ID=mRNA_E_fasciculatus_S2_contig7416.15591.1|Name=mRNA_E_fasciculatus_S2_contig7416.15591.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2455bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7416:462..2916- (Ectocarpus fasciculatus EfasUO2)
ATGAGGCCGTCTGGAGGTGCTTTCGCGGTGGGCCTAGCAAGCCTGGGCTT GGCCAGCACTCACGCATTCACGGGACCAGCGCTGACCACCGCTCGCAGCG GCAGTAGCAGCAGCAGCAGGTCGCGCGTTGTTGCTTCAACTGCAGTCAGC GATTCAGCGGTCGGTGAGAGGGTCGGTGGAGATGATGATCAGCTGCAGTA ACCGTATCATGTGTCGCTCACGTGAGGGGTGGGTGTTTGTCCTTTTGTGG CCACTGCTGTAGATGTGGCTGAGAGTTGGTATTGTAGCCGCAAACCGAGG AGTGCGTTGTGCCGGGTGTGGCTTGTTCGGCGGGTGAAGTTTAACTTTCA CAACGACAACAACGGCAGCGCCTGCCCCTACCGCAGCAACTACCGCAGTT GTAGTCTACTGCTGTTACCAGCAGGTCATCTCTGCCAAGAGTTGAGAGGC ACAGCAGTAGGCAGGTCGTCGTCGTTGAGGTGATGGGGTTTCGAGTTTGG GTACGCTTCAAAGTGTTTGCTGCCGCAACGCTACACGTACGAGCGAAACA TGGCCGGCCCCCCGGTTCGGAGATGACGCCAAGCAGATCGCGTTCCCTAC ACGAGTCGTACCATGATATTGTAACATGCGCCGTTCTACGGAAGGACGGG TCTGCACCTCTGCACCTACCACTGCTGTTGGTTGCCGCGCACATCGACTG ACTCCTCAGGGTGTGCATATAAAACCCCTTTGTCGGTGTGCTATTTGGGA TGCAGCTGCGGTGTGAAATATTAATATTCATCTGCTGCGATACCAAGTCT TCAACAAAGCACTTGCGGTGTTCGACTCTGTATGTATGCATAGAACGGAG CATACCGCAACACGCGGTACTACAGTACTGCTGTTCCGCATGAACATGTA CCTCCGGGTTTGCGGATCGCGGAACACCCGTGAGACGTCTCGGATATTTA CAGGTTACCGTCACCCCCCGTAGGCACGCGACACGCACACCAACCCTAGG GCCAATTGCACGCCCGCTCCCGATGAAAAAAAAAAAAAAAACGCGCCATC ACACAACAACCCCCCCCCCCCGTTGACGTTGAACCGGCAGCACCGACTGC TGCTTCTGCCGCGGATGAGCAGTACTCTCCGCCGCAGCTGGTGGCAGCGT TGCGAGAGGCGTCAGCGCAGTCGCCGCCGCTGGGCGTGGAAGGGGTATTC TCCGCGATGGCCCGAGACGACGTGTTCCTGAACGAGGTGCGCTGTTTCCC CCAACGGCCACATTGATTGGTAAATTACGGTGTACCGTTCCATGTTTTCC GCGATGGCCCGGGACGACGGCTTTCTGAATGAGGTACGTTGTTACCGCAA CAACCACATTTGATTTGGTGAATTTCCGTGTACCATACCACTAGAGGTAT CATACCCACGAAGGATGCCACCCACCCCCTACAGAACCACCACGTTTTTG CGGCTCAACATGGGGCCCAAACGCACAAGCACCCTCAGGATCGAGTATAT TAGGACGGCACAGGATACCACACCTCGCACCACGTAACACCGCACCAGGT GCAAGTTAGTACTGTTACACGCCACAACCGTTATCGGCAGATGTGATGTG TGTATCTTGTGCGGTCAAGTTACAATGGATGGCGGCAGAACATCTGTCGC TGATCCGGCATACCCTCCTCCAGGTCATCACCTACCCACTTGCCGTCCTC ACCCACACACCCACCCTGCCAAAATTCGCCTCGTCATGTACTTTTCACTC CCCCCCCTCCATATATCCCTGCCTCTCTCACCGTCTTTCCGTCTCCCCTC GCCCCAACCTTTCGCAGAGTAGGAAGGAAGATTGGCCATCGATGATCGGT CCTGTGGGAACAATGCTCCGCCCTCTCGAGGACGTGTGGTCAGTAGTCTA TCCGCTACAACATGAGTAACACCCCCCCCCGCTCTTTGCCAAAACTCGCG TGCCTCTTGGGCAACCAATCAACGTGCGAACGGAGACCAGCTGTGGCAGA AGAAACCCTTCTTCTGCGACGCGAGCCTTCCCAGCCTGGCCGGGCAGTAC ACCCTCGACGACGTCCAGCAGGCGGTCGACTCGGACTTCGTTGAGGTGGG GGGTTTACACCTGAATGTTCGGAGCGGTGTACTAACGTATTCCATATGTC TTAGTCGCTAGACCATTGACCTACTCGCATGCCGGGACGGAGCGATATGC CGGGGTTTCGCCAGCCCAGGGTACGCTTTTTAAGGTCGATTCAGCAGCTT GCCGTCTGTTGGATGACCAGAGGATGGTGCTTTCGTGCTTGCGCTCGCCG TGGGTGCTCCGAAACAGGCCGGGAGAGGGACTTTTAGTCAGGGTTCGACA GGGTGGAGGATGGCGCCGGTGTCTACGCCGAGGGGGAAGAGCTTCGACGA CGCCAAGCTGAGGTTCGACGACGTCAAGAGCGCGTTGAAAGAGAAGAGCG GGACT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7416:462..2916-

>mRNA_E_fasciculatus_S2_contig7416.15591.1 ID=mRNA_E_fasciculatus_S2_contig7416.15591.1|Name=mRNA_E_fasciculatus_S2_contig7416.15591.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=552bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7416:462..2916- (Ectocarpus fasciculatus EfasUO2)
ATGAGGCCGTCTGGAGGTGCTTTCGCGGTGGGCCTAGCAAGCCTGGGCTT
GGCCAGCACTCACGCATTCACGGGACCAGCGCTGACCACCGCTCGCAGCG
GCAGTAGCAGCAGCAGCAGGTCGCGCGTTGTTGCTTCAACTGCAGTCAGC
GATTCAGCGGTCGCACCGACTGCTGCTTCTGCCGCGGATGAGCAGTACTC
TCCGCCGCAGCTGGTGGCAGCGTTGCGAGAGGCGTCAGCGCAGTCGCCGC
CGCTGGGCGTGGAAGGGGTATTCTCCGCGATGGCCCGAGACGACGTGTTC
CTGAACGAGCTGTGGCAGAAGAAACCCTTCTTCTGCGACGCGAGCCTTCC
CAGCCTGGCCGGGCAGTACACCCTCGACGACGTCCAGCAGGCGGTCGACT
CGGACTTCGTTGAGGCCGGGAGAGGGACTTTTAGTCAGGGTTCGACAGGG
TGGAGGATGGCGCCGGTGTCTACGCCGAGGGGGAAGAGCTTCGACGACGC
CAAGCTGAGGTTCGACGACGTCAAGAGCGCGTTGAAAGAGAAGAGCGGGA
CT
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