mRNA_E_fasciculatus_S2_contig733.15519.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig733.15519.1
Unique NamemRNA_E_fasciculatus_S2_contig733.15519.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 1.350e-70
Identity = 113/131 (86.26%), Postives = 115/131 (87.79%), Query Frame = 1
Query:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVS*KDSSCYLDSI--T*TRPEQMPQRGTSVPRIK 387
            MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSV  +  SC + SI      P  MPQRG SVPR K
Sbjct:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVCRR--SCLVASIWYPLDAPGAMPQRGISVPRKK 129          
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 6.130e-64
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1
Query:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMS 291
            MSNKHQHIFAEDMSDEMC FALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWV+MS
Sbjct:    1 MSNKHQHIFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVLMS 97          
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA)

HSP 1 Score: 167 bits (424), Expect = 9.360e-52
Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 1
Query:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
            M+NKHQHIFAEDM+D+MCQFAL+TS+EAF LTI KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+
Sbjct:    1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92          
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH)

HSP 1 Score: 117 bits (292), Expect = 3.320e-31
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1
Query:   22 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
            +FAEDMS+E  + A++ +++AF LTI  G V +TIA  IRK F++ + RGWN +VGRSFGAYVTHEIKTY+YFTV PG YVLLW+
Sbjct:   44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128          
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.970e-30
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 1
Query:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
            M+   Q +FAEDMS+E   F LE + +AF     +G+V++ +A+ IR A EK YG+GWNVVVG+SFGA+VTHEIKTY Y +VVPGV VL+WR
Sbjct:    1 MAKATQQVFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92          
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.890e-30
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1
Query:   22 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
            +FAEDM+D M +  + T+++AFQL +  G+ F+TIA  +R+  EK YGRGWN +VG SFGAYVTHEIKTY+YF+V  GV VL+WR
Sbjct:   13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97          
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL)

HSP 1 Score: 111 bits (277), Expect = 2.610e-29
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 1
Query:   22 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
            +FAEDM+D M    L T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+
Sbjct:   14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98          
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM)

HSP 1 Score: 107 bits (268), Expect = 5.410e-28
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1
Query:   22 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL 267
            +FAEDM+D M + AL T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL
Sbjct:   14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95          
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.190e-28
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   22 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
            +FAEDMS+E  + A + +++AF +TI+ G   +TIA  IRK F+  +  GWN +VGRSFGAYVTHEIKTY YF+V PG YVLLWR
Sbjct:   32 VFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116          
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.180e-27
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 1
Query:   22 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
            +FAEDM+D M + AL T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+
Sbjct:   14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWK 98          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dynein1.350e-7086.26light chain n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Dynein6.130e-6497.94light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
Dynein9.360e-5282.61light chain n=1 Tax=Tribonema minus TaxID=303371 R... [more]
Uncharacterized3.320e-3162.35protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
Dynein4.970e-3057.61light chain n=1 Tax=Pelagomonas calceolata TaxID=3... [more]
Dynein8.890e-3058.82light chain n=8 Tax=Saprolegniaceae TaxID=4764 Rep... [more]
Dynein2.610e-2960.00light chain n=1 Tax=Plasmopara halstedii TaxID=478... [more]
Dynein5.410e-2862.20light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3H... [more]
Dynein7.190e-2858.82light chain n=1 Tax=Spumella elongata TaxID=89044 ... [more]
Dynein1.180e-2761.18light chain n=1 Tax=Phytophthora megakarya TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig733contigE_fasciculatus_S2_contig733:19483..20619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score200.7
Seed ortholog evalue3.3e-49
Seed eggNOG ortholog2880.D7FQ30
Model size399
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007670.1
Cds size300
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842397.0773168-CDS-E_fasciculatus_S2_contig733:19482..195931696842397.0773168-CDS-E_fasciculatus_S2_contig733:19482..19593Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig733 19483..19593 +
1696842397.0935917-CDS-E_fasciculatus_S2_contig733:20331..205201696842397.0935917-CDS-E_fasciculatus_S2_contig733:20331..20520Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig733 20332..20520 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842397.1029377-UTR-E_fasciculatus_S2_contig733:20520..206191696842397.1029377-UTR-E_fasciculatus_S2_contig733:20520..20619Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig733 20521..20619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig733.15519.1prot_E_fasciculatus_S2_contig733.15519.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig733 19483..20520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig733.15519.1

>prot_E_fasciculatus_S2_contig733.15519.1 ID=prot_E_fasciculatus_S2_contig733.15519.1|Name=mRNA_E_fasciculatus_S2_contig733.15519.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=100bp
MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAF
EKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVS*
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mRNA from alignment at E_fasciculatus_S2_contig733:19483..20619+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig733.15519.1 ID=mRNA_E_fasciculatus_S2_contig733.15519.1|Name=mRNA_E_fasciculatus_S2_contig733.15519.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1137bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig733:19483..20619+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGAATAAACATCAACATATTTTTGCGGAAGACATGTCGGATGAGAT GTGCCAGTTCGCCTTGGAGACCAGCCAAGAAGCCTTCCAGTTGACCATCA CTAAAGGCCAGGTGGGACGCGAGGAATGCACACGATGATACTTGCTTGAC TACTGTTGTTGAACAAGGCCAACTACAGTAGAACTGCCGTGACTCCACCT ACGCACTCCCAAGACCTGTCTACCGACGTTTGACTCCCCAACGCACGGCA CATGAATTGAATTCGTCCCAATCGAATCGCAGCTATTCTGCAGCTGGTGT ATTCGTCAGGTACACTGTAGCTGCCATATGTGGGTCATATCGGAGAGAGA GAGCCAAAGCCACACAAAGGGAAAAACAGGAACCCTACTTGCGTTCGCAA CAGCATTCTAGTCTAAAATTTCGCGATCGGGTGGGACGTCTGATTGTCAT GACTGAGTGTTGGATCTGGGAAACCACGTCCAATATGTACTCGACCACGA CAAATACGGAGTGTGATCTCGCTGGCAAGTTACTGTCTCTCGGCGACAAG AGAGTAGAAGCGTTCCTGGACAGCGTCGCAAATTGATCGCTCGATAGAAA TCTGGAATTTTGGGATCTGTTGGAGCGGACACAGTCTTCGGGGAGGCTCC CCAACATTGGGTGTCGTGATCGCATAGCCCACACGACTTACGTAGCAAAC GTCCAAGGAATGACTTGACTGCAAGCAATTGTGGCTGATTACCTTGCCTT GTATCTTCGTTATTTCTCCGTGACTGCCGGCGGATTCTCAATGACCACCG GGGGATCAATACTACATTGACTACAACAACGATGGTGACAACGAGCAAGG TGTTCACAACGATTGCTTCGTGCATCCGCAAAGCGTTCGAGAAGTCGTAC GGCCGGGGCTGGAACGTTGTCGTGGGGAGAAGTTTCGGAGCCTACGTGAC CCACGAGATCAAGACGTACATGTACTTTACTGTTGTCCCGGGGGTCTATG TGCTGCTGTGGAGGTGGGTCGTGATGTCCGTATCCTAGAAGGATTCGTCT TGTTACCTCGATAGTATCACCTAGACGCGCCCGGAGCAAATGCCTCAGCG GGGCACTTCAGTCCCGAGGATAAAAAAGAAACAAAAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig733:19483..20619+

>mRNA_E_fasciculatus_S2_contig733.15519.1 ID=mRNA_E_fasciculatus_S2_contig733.15519.1|Name=mRNA_E_fasciculatus_S2_contig733.15519.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=300bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig733:19483..20619+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGAATAAACATCAACATATTTTTGCGGAAGACATGTCGGATGAGAT
GTGCCAGTTCGCCTTGGAGACCAGCCAAGAAGCCTTCCAGTTGACCATCA
CTAAAGGCCAGGTGTTCACAACGATTGCTTCGTGCATCCGCAAAGCGTTC
GAGAAGTCGTACGGCCGGGGCTGGAACGTTGTCGTGGGGAGAAGTTTCGG
AGCCTACGTGACCCACGAGATCAAGACGTACATGTACTTTACTGTTGTCC
CGGGGGTCTATGTGCTGCTGTGGAGGTGGGTCGTGATGTCCGTATCCTAG
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