mRNA_E_fasciculatus_S2_contig733.15519.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI) HSP 1 Score: 217 bits (552), Expect = 1.350e-70 Identity = 113/131 (86.26%), Postives = 115/131 (87.79%), Query Frame = 1
Query: 1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVS*KDSSCYLDSI--T*TRPEQMPQRGTSVPRIK 387
MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSV + SC + SI P MPQRG SVPR K
Sbjct: 1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMSVCRR--SCLVASIWYPLDAPGAMPQRGISVPRKK 129
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE) HSP 1 Score: 199 bits (505), Expect = 6.130e-64 Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1
Query: 1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVVMS 291
MSNKHQHIFAEDMSDEMC FALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWV+MS
Sbjct: 1 MSNKHQHIFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWRWVLMS 97
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA) HSP 1 Score: 167 bits (424), Expect = 9.360e-52 Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 1
Query: 1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
M+NKHQHIFAEDM+D+MCQFAL+TS+EAF LTI KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+
Sbjct: 1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH) HSP 1 Score: 117 bits (292), Expect = 3.320e-31 Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1
Query: 22 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
+FAEDMS+E + A++ +++AF LTI G V +TIA IRK F++ + RGWN +VGRSFGAYVTHEIKTY+YFTV PG YVLLW+
Sbjct: 44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA) HSP 1 Score: 113 bits (283), Expect = 4.970e-30 Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 1
Query: 1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
M+ Q +FAEDMS+E F LE + +AF +G+V++ +A+ IR A EK YG+GWNVVVG+SFGA+VTHEIKTY Y +VVPGV VL+WR
Sbjct: 1 MAKATQQVFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA) HSP 1 Score: 112 bits (280), Expect = 8.890e-30 Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1
Query: 22 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
+FAEDM+D M + + T+++AFQL + G+ F+TIA +R+ EK YGRGWN +VG SFGAYVTHEIKTY+YF+V GV VL+WR
Sbjct: 13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL) HSP 1 Score: 111 bits (277), Expect = 2.610e-29 Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 1
Query: 22 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
+FAEDM+D M L T+++AFQL +T + F+TIA +R+ EK YGRGWN VVG SFGAYVTHEIKTY+YF+V GV VL+W+
Sbjct: 14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM) HSP 1 Score: 107 bits (268), Expect = 5.410e-28 Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1
Query: 22 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL 267
+FAEDM+D M + AL T+++AFQL +T + F+TIA +R+ EK YGRGWN VVG SFGAYVTHEIKTY+YF+V GV VL
Sbjct: 14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA) HSP 1 Score: 108 bits (269), Expect = 7.190e-28 Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1
Query: 22 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
+FAEDMS+E + A + +++AF +TI+ G +TIA IRK F+ + GWN +VGRSFGAYVTHEIKTY YF+V PG YVLLWR
Sbjct: 32 VFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Match: Dynein (light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.180e-27 Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 1
Query: 22 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 276
+FAEDM+D M + AL T+++AFQL +T + F+TIA +R+ EK YGRGWN VVG SFGAYVTHEIKTY+YF+V GV VL+W+
Sbjct: 14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWK 98 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig733.15519.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig733.15519.1 >prot_E_fasciculatus_S2_contig733.15519.1 ID=prot_E_fasciculatus_S2_contig733.15519.1|Name=mRNA_E_fasciculatus_S2_contig733.15519.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=100bp MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFback to top mRNA from alignment at E_fasciculatus_S2_contig733:19483..20619+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig733.15519.1 ID=mRNA_E_fasciculatus_S2_contig733.15519.1|Name=mRNA_E_fasciculatus_S2_contig733.15519.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1137bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig733:19483..20619+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig733:19483..20619+ >mRNA_E_fasciculatus_S2_contig733.15519.1 ID=mRNA_E_fasciculatus_S2_contig733.15519.1|Name=mRNA_E_fasciculatus_S2_contig733.15519.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=300bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig733:19483..20619+ (Ectocarpus fasciculatus EfasUO2)back to top |