mRNA_E_fasciculatus_S2_contig7308.15499.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Leucine (rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP4_ECTSI) HSP 1 Score: 477 bits (1228), Expect = 4.370e-162 Identity = 285/296 (96.28%), Postives = 291/296 (98.31%), Query Frame = 2
Query: 266 MGNKESTHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
MGNKES+HSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQK+KTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNM+SXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSN+LAGAGALGALPACL KL+LRDN LGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPAL ELILDENSLRALGDELVGLSKLKKLS RSNRIAAVDPFSGQQSISRGLFADSAVE+LELAGN LDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD
Sbjct: 1 MGNKESSHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKMKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNQLAGAGALGALPACLKKLVLRDNRLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALEELILDENSLRALGDELVGLSKLKKLSVRSNRIAAVDPFSGQQSISRGLFADSAVESLELAGNALDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 296
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA00_9STRA) HSP 1 Score: 131 bits (330), Expect = 5.360e-31 Identity = 78/175 (44.57%), Postives = 108/175 (61.71%), Query Frame = 2
Query: 632 DVSAGSNRLA-GAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
D++A N L G A+ LP L+KL L N L +VPAA+ GLPALQ+ +LS+N I L G LPAL EL+ D+N + + + L +LK LS RSN I + S Q +++ LF +AV L L GN + KT L+ M+GV F+ RRE++K+K+L GG +L S+CGLD
Sbjct: 66 DLNAARNELGLGGDAVPCLPTTLSKLDLSSNKLSQVPAALAAGLPALQICNLSSNAITSLAGLGG-LPALEELLADDNQIAVIEPSIRELRRLKTLSLRSNCIGS--DLSRGQPLAQELFECTAVVVLNLEGNVITKTQLLDMQGVSKFMERRERSKDKSLAGGALLNFSLCGLD 237
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAS0_TRICV) HSP 1 Score: 125 bits (313), Expect = 2.340e-28 Identity = 93/269 (34.57%), Postives = 132/269 (49.07%), Query Frame = 2
Query: 398 QKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMS--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGA-----------LGALPACLTKLMLRDNSLGEVPAAVLD-GLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRI---AAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
QKI+TA TG+L+L+EH L ++P+ ++ L LRTL++S + + +S LS L +SAG NRL L +LP L +L L N VP + + L L+ LDLS N + +P A L +L ++ LD NS+ +L +E+ L KLK LS R+N I + V Q I LF ++ V L L GN + T L +G FL RR K KNKN+ GG + L+VCGL+
Sbjct: 1 QKIETAQKTGILSLREHKLDDVPDSVYELSNLRTLDLSKNNLTVLGRNLVNLANLKSLNCDSNKLQPGSLAPVSRLSKLQTLSAGGNRLGEPSRTEGPSQPQPEPLPSLPVSLKQLKLDTNFFSSVPPQICNPSLVKLEKLDLSFNFLATIPAGIAYLTSLVDINLDSNSIVSLPEEIGQLKKLKALSLRNNHIQVHSTVFSEKNPQPIPESLFTNTLVIDLNLHGNKMTNTQLNDFQGFHFFLERRTKVKNKNVYGGALTDLNVCGLE 269
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GRI1_PHYRM) HSP 1 Score: 112 bits (280), Expect = 7.030e-24 Identity = 115/263 (43.73%), Postives = 139/263 (52.85%), Query Frame = 2
Query: 368 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFAD-SAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
K K R V QK+++A ATGVLAL LK++PE L L LRTL++ XXXXXXXXXXXXXXXXXXXXXXXX +PDLSAL +LT + N L + ALP LTKL L+ N L VP +VL+ L LQ KLK LSAR N + + Q I+ L + SAV+ + L GNPL K DL M+G D FL RR K KNK + GG LS+CGL+
Sbjct: 18 KPKNNRSVQQQKLRSAKATGVLALPNSKLKKLPEELLELSTLRTLDLXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTLPDLSALEALTTLVLDGNLLEDIPS--ALPPNLTKLSLKGNRLRAVPRSVLE-LAQLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLKVLSARRNTLVGRSAGAKVQPIAAELLGEGSAVQVMNLEGNPLTKEDLQGMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGLE 277
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Putative (LRR protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UJM0_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.210e-23 Identity = 116/273 (42.49%), Postives = 143/273 (52.38%), Query Frame = 2
Query: 368 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDL------------SANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGL 1150
K K R V QK+K+A ATGVLAL LK++P+ L+ L LR+L++S XXXXXXXXXXXXXXXXXXXXXXXXX +PDLS L +LT + N L ALP L KL L+ N L VP ++L L LQ LDL S N ++ LP + SAR N + + Q I+ L DSAV+ + L GNP+ K DL M+G D FL RR K KNK + GG LS+CGL
Sbjct: 18 KPKNSRSVQQQKLKSAKATGVLALPNSKLKKLPDELWQLSTLRSLDLSXXXXXXXXXXXXXXXXXXXXXXXXXXLAALPDLSPLQALTTLVLDGNVLEDLPL--ALPPNLIKLSLKGNKLRAVPRSILS-LVHLQELDLIXXXXXXXXXXXSDNALDLLPANLGEMQEXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNSLVGKSAGAKTQPIAAQLLQDSAVQVMNLDGNPMTKEDLQAMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGL 287
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNJ4_9STRA) HSP 1 Score: 109 bits (273), Expect = 5.120e-23 Identity = 93/285 (32.63%), Postives = 123/285 (43.16%), Query Frame = 2
Query: 308 GQGATS--DFRDALTSLPGSAPKNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
GQ AT + R A S P K R V QK+K+A ATGVLAL +H LK++P L L LR+L++SS +PDLSAL+ ALP LTKL L++N L E+P +V L LQ LD+S N + LP L +L + R+ G I+R + DS V + L GNP+ K DL M+G + FL RR + KNK + GG +S+CGLD
Sbjct: 2 GQAATKAQEARAAAKSRP------KQTRSVLQQKLKSAAATGVLALPDHKLKQLPRELLELANLRSLDVSSNRLAELPRDFAAALPQLRTLKLAGNALTALPDLSALTXXXXXXXXXXXXXXX--XEALPPNLTKLSLKNNRLRELPLSVTR-LAQLQELDVSGNELAALPEHVGALASLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRL-------GPHGIAREVLTDSGVHIMNLEGNPMSKFDLEAMDGFERFLERRTQAKNKEIHGGLSADVSLCGLD 270
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Uncharacterized (protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6T7_9STRA) HSP 1 Score: 106 bits (265), Expect = 6.790e-22 Identity = 108/262 (41.22%), Postives = 131/262 (50.00%), Query Frame = 2
Query: 368 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFA-DSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGL 1150
K K R + QK+KTA TGVLAL LK++PE + L LR L+++ XXXXXXXXXXXXXXXXXXXXXX +PDLSAL+ LT LP L KL L++N L VP +VL L LQ KLK LSAR N + + QSI+ L DSAV+ + L GNP+ K DL +M+G D FL RR K KNK + GG LS+CGL
Sbjct: 18 KPKNNRSIQQQKMKTAKTTGVLALPNSKLKKLPEEVLELSMLRILDLTGNHXXXXXXXXXXXXXXXXXXXXXXILETLPDLSALTGLTXXXXXXXXXXXIP--NVLPPKLIKLSLKNNRLSTVPCSVL-ALTQLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVKLKMLSARRNTLVGQSAGAKVQSIAAELLGEDSAVQVMNLEGNPMTKEDLQKMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGL 276
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PXK3_9STRA) HSP 1 Score: 106 bits (265), Expect = 7.080e-22 Identity = 83/257 (32.30%), Postives = 115/257 (44.75%), Query Frame = 2
Query: 368 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMS-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAG--ALGALPACLTKLMLRDNSLGEVPAAVLDG-LPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPF---SGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQG 1117
KNKTG+KV +QKI+ A T +L+L EH L+EIPE +F L LRTL++S + I +S L+ L +S G NRL + LP+ + L + NS +P ++D L L+ LDL++N + +P + L AL ELILD N I + Q I +F D+ + L L GNP+ T L EG D FL RR+K K L G
Sbjct: 23 KNKTGKKVVSQKIENAKKTNILSLTEHKLEEIPEEVFHLTSLRTLDISKNKLQRLGNIGRLTELKTLNCDDNSLHSSAIAPISKLAKLQSLSLGKNRLEDPANQSFPTLPSKIKTLKIHHNSFSSIPKQIVDPKLRLLEKLDLASNNLASIPAGISNLVALTELILDXXXXXXXXXXXXXXXXXXXXXXXXNYIQVKSTSFTDANPQPIPASVFEDTLLIDLNLHGNPMTNTQLNTFEGFDAFLERRKKKKTTALTG 279
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Uncharacterized (protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UTM1_9STRA) HSP 1 Score: 104 bits (260), Expect = 3.110e-21 Identity = 112/263 (42.59%), Postives = 135/263 (51.33%), Query Frame = 2
Query: 368 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFA-DSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
K KTGR V QK+K+A ATGVLAL LK++PE L L +RT XXXXXXXXXXXXXXXXXXXXXXXXXX +PDLS L +LT + N L ALP LTKL ++ N L VP +VL+ L LQ SAR N + + QSI+ L DS+V+ + L GNP+ K DL M+G D FL RR K KNK + GG LS+CGL+
Sbjct: 18 KPKTGRSVQQQKLKSAKATGVLALPNSKLKKLPEELLELSAMRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLPDLSGLEALTTLVLDCNMLEDIP--NALPPNLTKLSIKGNKLRAVPRSVLE-LAQLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNTLVGRSAGAKVQSIAAELLGEDSSVQVMNLEGNPMTKEDLQGMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGLE 277
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQF7_9STRA) HSP 1 Score: 103 bits (258), Expect = 7.100e-21 Identity = 116/271 (42.80%), Postives = 141/271 (52.03%), Query Frame = 2
Query: 359 SAPKNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAG-AL----GALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFAD-SAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
S PKN G V QK++TA ATGVLAL + LK++P+ LFTL LR+L+ XXXXXXXXXXXXXXXXXXXXXXXXX +PDLSAL++LT V +L G AL ALP LTKL L+ N L VP +++ L L+ SAR N + +Q I+ L D S V+ L L GNP+ K DL MEG D FL RR + KNK + GG LS+CGLD
Sbjct: 21 SKPKNSRG--VQQQKLRTARATGVLALPDSKLKKLPDELFTLSALRSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXIATLPDLSALTALTTVRVLCLKLVLDGNALEDLPNALPPNLTKLSLKGNRLRTVPHSIV-ALTQLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNTLVGRSAGGSEQPIAAELLGDGSTVQVLNLEGNPMTKEDLQTMEGFDAFLTRRTQLKNKEIHGGLNSDLSLCGLD 288 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7308.15499.1 >prot_E_fasciculatus_S2_contig7308.15499.1 ID=prot_E_fasciculatus_S2_contig7308.15499.1|Name=mRNA_E_fasciculatus_S2_contig7308.15499.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=297bp MGNKESTHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKIKTAback to top mRNA from alignment at E_fasciculatus_S2_contig7308:1245..6454- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7308.15499.1 ID=mRNA_E_fasciculatus_S2_contig7308.15499.1|Name=mRNA_E_fasciculatus_S2_contig7308.15499.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7308:1245..6454- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7308:1245..6454- >mRNA_E_fasciculatus_S2_contig7308.15499.1 ID=mRNA_E_fasciculatus_S2_contig7308.15499.1|Name=mRNA_E_fasciculatus_S2_contig7308.15499.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=891bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7308:1245..6454- (Ectocarpus fasciculatus EfasUO2)back to top |