mRNA_E_fasciculatus_S2_contig7308.15499.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7308.15499.1
Unique NamemRNA_E_fasciculatus_S2_contig7308.15499.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Leucine (rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP4_ECTSI)

HSP 1 Score: 477 bits (1228), Expect = 4.370e-162
Identity = 285/296 (96.28%), Postives = 291/296 (98.31%), Query Frame = 2
Query:  266 MGNKESTHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
            MGNKES+HSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQK+KTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNM+SXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSN+LAGAGALGALPACL KL+LRDN LGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPAL ELILDENSLRALGDELVGLSKLKKLS RSNRIAAVDPFSGQQSISRGLFADSAVE+LELAGN LDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD
Sbjct:    1 MGNKESSHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKMKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNQLAGAGALGALPACLKKLVLRDNRLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALEELILDENSLRALGDELVGLSKLKKLSVRSNRIAAVDPFSGQQSISRGLFADSAVESLELAGNALDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 296          
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA00_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.360e-31
Identity = 78/175 (44.57%), Postives = 108/175 (61.71%), Query Frame = 2
Query:  632 DVSAGSNRLA-GAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
            D++A  N L  G  A+  LP  L+KL L  N L +VPAA+  GLPALQ+ +LS+N I  L   G  LPAL EL+ D+N +  +   +  L +LK LS RSN I +    S  Q +++ LF  +AV  L L GN + KT L+ M+GV  F+ RRE++K+K+L GG +L  S+CGLD
Sbjct:   66 DLNAARNELGLGGDAVPCLPTTLSKLDLSSNKLSQVPAALAAGLPALQICNLSSNAITSLAGLGG-LPALEELLADDNQIAVIEPSIRELRRLKTLSLRSNCIGS--DLSRGQPLAQELFECTAVVVLNLEGNVITKTQLLDMQGVSKFMERRERSKDKSLAGGALLNFSLCGLD 237          
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAS0_TRICV)

HSP 1 Score: 125 bits (313), Expect = 2.340e-28
Identity = 93/269 (34.57%), Postives = 132/269 (49.07%), Query Frame = 2
Query:  398 QKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMS--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGA-----------LGALPACLTKLMLRDNSLGEVPAAVLD-GLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRI---AAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
            QKI+TA  TG+L+L+EH L ++P+ ++ L  LRTL++S  +                            +  +S LS L  +SAG NRL                L +LP  L +L L  N    VP  + +  L  L+ LDLS N +  +P   A L +L ++ LD NS+ +L +E+  L KLK LS R+N I   + V      Q I   LF ++ V  L L GN +  T L   +G   FL RR K KNKN+ GG +  L+VCGL+
Sbjct:    1 QKIETAQKTGILSLREHKLDDVPDSVYELSNLRTLDLSKNNLTVLGRNLVNLANLKSLNCDSNKLQPGSLAPVSRLSKLQTLSAGGNRLGEPSRTEGPSQPQPEPLPSLPVSLKQLKLDTNFFSSVPPQICNPSLVKLEKLDLSFNFLATIPAGIAYLTSLVDINLDSNSIVSLPEEIGQLKKLKALSLRNNHIQVHSTVFSEKNPQPIPESLFTNTLVIDLNLHGNKMTNTQLNDFQGFHFFLERRTKVKNKNVYGGALTDLNVCGLE 269          
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GRI1_PHYRM)

HSP 1 Score: 112 bits (280), Expect = 7.030e-24
Identity = 115/263 (43.73%), Postives = 139/263 (52.85%), Query Frame = 2
Query:  368 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFAD-SAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
            K K  R V  QK+++A ATGVLAL    LK++PE L  L  LRTL++  XXXXXXXXXXXXXXXXXXXXXXXX    +PDLSAL +LT +    N L    +  ALP  LTKL L+ N L  VP +VL+ L  LQ                                           KLK LSAR N +      +  Q I+  L  + SAV+ + L GNPL K DL  M+G D FL RR K KNK + GG    LS+CGL+
Sbjct:   18 KPKNNRSVQQQKLRSAKATGVLALPNSKLKKLPEELLELSTLRTLDLXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTLPDLSALEALTTLVLDGNLLEDIPS--ALPPNLTKLSLKGNRLRAVPRSVLE-LAQLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLKVLSARRNTLVGRSAGAKVQPIAAELLGEGSAVQVMNLEGNPLTKEDLQGMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGLE 277          
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Putative (LRR protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UJM0_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.210e-23
Identity = 116/273 (42.49%), Postives = 143/273 (52.38%), Query Frame = 2
Query:  368 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDL------------SANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGL 1150
            K K  R V  QK+K+A ATGVLAL    LK++P+ L+ L  LR+L++S XXXXXXXXXXXXXXXXXXXXXXXXX   +PDLS L +LT +    N L       ALP  L KL L+ N L  VP ++L  L  LQ LDL            S N ++ LP     +                             SAR N +      +  Q I+  L  DSAV+ + L GNP+ K DL  M+G D FL RR K KNK + GG    LS+CGL
Sbjct:   18 KPKNSRSVQQQKLKSAKATGVLALPNSKLKKLPDELWQLSTLRSLDLSXXXXXXXXXXXXXXXXXXXXXXXXXXLAALPDLSPLQALTTLVLDGNVLEDLPL--ALPPNLIKLSLKGNKLRAVPRSILS-LVHLQELDLIXXXXXXXXXXXSDNALDLLPANLGEMQEXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNSLVGKSAGAKTQPIAAQLLQDSAVQVMNLDGNPMTKEDLQAMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGL 287          
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNJ4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.120e-23
Identity = 93/285 (32.63%), Postives = 123/285 (43.16%), Query Frame = 2
Query:  308 GQGATS--DFRDALTSLPGSAPKNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
            GQ AT   + R A  S P      K  R V  QK+K+A ATGVLAL +H LK++P  L  L  LR+L++SS                             +PDLSAL+                   ALP  LTKL L++N L E+P +V   L  LQ LD+S N +  LP     L +L +                             R+       G   I+R +  DS V  + L GNP+ K DL  M+G + FL RR + KNK + GG    +S+CGLD
Sbjct:    2 GQAATKAQEARAAAKSRP------KQTRSVLQQKLKSAAATGVLALPDHKLKQLPRELLELANLRSLDVSSNRLAELPRDFAAALPQLRTLKLAGNALTALPDLSALTXXXXXXXXXXXXXXX--XEALPPNLTKLSLKNNRLRELPLSVTR-LAQLQELDVSGNELAALPEHVGALASLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRL-------GPHGIAREVLTDSGVHIMNLEGNPMSKFDLEAMDGFERFLERRTQAKNKEIHGGLSADVSLCGLD 270          
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Uncharacterized (protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6T7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.790e-22
Identity = 108/262 (41.22%), Postives = 131/262 (50.00%), Query Frame = 2
Query:  368 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFA-DSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGL 1150
            K K  R +  QK+KTA  TGVLAL    LK++PE +  L  LR L+++   XXXXXXXXXXXXXXXXXXXXXX    +PDLSAL+ LT                 LP  L KL L++N L  VP +VL  L  LQ                                           KLK LSAR N +      +  QSI+  L   DSAV+ + L GNP+ K DL +M+G D FL RR K KNK + GG    LS+CGL
Sbjct:   18 KPKNNRSIQQQKMKTAKTTGVLALPNSKLKKLPEEVLELSMLRILDLTGNHXXXXXXXXXXXXXXXXXXXXXXILETLPDLSALTGLTXXXXXXXXXXXIP--NVLPPKLIKLSLKNNRLSTVPCSVL-ALTQLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVKLKMLSARRNTLVGQSAGAKVQSIAAELLGEDSAVQVMNLEGNPMTKEDLQKMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGL 276          
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PXK3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.080e-22
Identity = 83/257 (32.30%), Postives = 115/257 (44.75%), Query Frame = 2
Query:  368 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMS-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAG--ALGALPACLTKLMLRDNSLGEVPAAVLDG-LPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPF---SGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQG 1117
            KNKTG+KV +QKI+ A  T +L+L EH L+EIPE +F L  LRTL++S +                            I  +S L+ L  +S G NRL      +   LP+ +  L +  NS   +P  ++D  L  L+ LDL++N +  +P   + L AL ELILD                        N I         +  Q I   +F D+ +  L L GNP+  T L   EG D FL RR+K K   L G
Sbjct:   23 KNKTGKKVVSQKIENAKKTNILSLTEHKLEEIPEEVFHLTSLRTLDISKNKLQRLGNIGRLTELKTLNCDDNSLHSSAIAPISKLAKLQSLSLGKNRLEDPANQSFPTLPSKIKTLKIHHNSFSSIPKQIVDPKLRLLEKLDLASNNLASIPAGISNLVALTELILDXXXXXXXXXXXXXXXXXXXXXXXXNYIQVKSTSFTDANPQPIPASVFEDTLLIDLNLHGNPMTNTQLNTFEGFDAFLERRKKKKTTALTG 279          
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Uncharacterized (protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UTM1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.110e-21
Identity = 112/263 (42.59%), Postives = 135/263 (51.33%), Query Frame = 2
Query:  368 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFA-DSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
            K KTGR V  QK+K+A ATGVLAL    LK++PE L  L  +RT     XXXXXXXXXXXXXXXXXXXXXXXXXX  +PDLS L +LT +    N L       ALP  LTKL ++ N L  VP +VL+ L  LQ                                                SAR N +      +  QSI+  L   DS+V+ + L GNP+ K DL  M+G D FL RR K KNK + GG    LS+CGL+
Sbjct:   18 KPKTGRSVQQQKLKSAKATGVLALPNSKLKKLPEELLELSAMRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLPDLSGLEALTTLVLDCNMLEDIP--NALPPNLTKLSIKGNKLRAVPRSVLE-LAQLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNTLVGRSAGAKVQSIAAELLGEDSSVQVMNLEGNPMTKEDLQGMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGLE 277          
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQF7_9STRA)

HSP 1 Score: 103 bits (258), Expect = 7.100e-21
Identity = 116/271 (42.80%), Postives = 141/271 (52.03%), Query Frame = 2
Query:  359 SAPKNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAG-AL----GALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFAD-SAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1153
            S PKN  G  V  QK++TA ATGVLAL +  LK++P+ LFTL  LR+L+   XXXXXXXXXXXXXXXXXXXXXXXXX   +PDLSAL++LT V     +L   G AL     ALP  LTKL L+ N L  VP +++  L  L+                                                SAR N +        +Q I+  L  D S V+ L L GNP+ K DL  MEG D FL RR + KNK + GG    LS+CGLD
Sbjct:   21 SKPKNSRG--VQQQKLRTARATGVLALPDSKLKKLPDELFTLSALRSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXIATLPDLSALTALTTVRVLCLKLVLDGNALEDLPNALPPNLTKLSLKGNRLRTVPHSIV-ALTQLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNTLVGRSAGGSEQPIAAELLGDGSTVQVLNLEGNPMTKEDLQTMEGFDAFLTRRTQLKNKEIHGGLNSDLSLCGLD 288          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7308.15499.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Leucine4.370e-16296.28rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
Uncharacterized5.360e-3144.57protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical2.340e-2834.57protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Uncharacterized7.030e-2443.73protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GR... [more]
Putative2.210e-2342.49LRR protein n=1 Tax=Phytophthora megakarya TaxID=4... [more]
Uncharacterized5.120e-2332.63protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Uncharacterized6.790e-2241.22protein n=1 Tax=Peronospora effusa TaxID=542832 Re... [more]
Hypothetical7.080e-2232.30protein (Fragment) n=2 Tax=Skeletonema marinoi Tax... [more]
Uncharacterized3.110e-2142.59protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6... [more]
Uncharacterized7.100e-2142.80protein (Fragment) n=2 Tax=Nothophytophthora sp. C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7308contigE_fasciculatus_S2_contig7308:1245..6454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score481.1
Seed ortholog evalue3.7e-133
Seed eggNOG ortholog2880.D8LLP4
Preferred nameLRRC57
Model size2110
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionLeucine rich repeat protein
Ec32 orthologEc-04_004990.1
Cds size891
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7308.15499.1prot_E_fasciculatus_S2_contig7308.15499.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7308 2223..6189 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842395.1706386-UTR-E_fasciculatus_S2_contig7308:1244..19551696842395.1706386-UTR-E_fasciculatus_S2_contig7308:1244..1955Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7308 1245..1955 -
1696842395.1824827-UTR-E_fasciculatus_S2_contig7308:1979..22221696842395.1824827-UTR-E_fasciculatus_S2_contig7308:1979..2222Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7308 1980..2222 -
1696842395.26289-UTR-E_fasciculatus_S2_contig7308:6189..64541696842395.26289-UTR-E_fasciculatus_S2_contig7308:6189..6454Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7308 6190..6454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842395.1931746-CDS-E_fasciculatus_S2_contig7308:2222..24111696842395.1931746-CDS-E_fasciculatus_S2_contig7308:2222..2411Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7308 2223..2411 -
1696842395.2035909-CDS-E_fasciculatus_S2_contig7308:3190..33851696842395.2035909-CDS-E_fasciculatus_S2_contig7308:3190..3385Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7308 3191..3385 -
1696842395.2139463-CDS-E_fasciculatus_S2_contig7308:4037..42141696842395.2139463-CDS-E_fasciculatus_S2_contig7308:4037..4214Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7308 4038..4214 -
1696842395.2243354-CDS-E_fasciculatus_S2_contig7308:4782..48811696842395.2243354-CDS-E_fasciculatus_S2_contig7308:4782..4881Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7308 4783..4881 -
1696842395.2344382-CDS-E_fasciculatus_S2_contig7308:5402..55141696842395.2344382-CDS-E_fasciculatus_S2_contig7308:5402..5514Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7308 5403..5514 -
1696842395.2443504-CDS-E_fasciculatus_S2_contig7308:6070..61891696842395.2443504-CDS-E_fasciculatus_S2_contig7308:6070..6189Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7308 6071..6189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7308.15499.1

>prot_E_fasciculatus_S2_contig7308.15499.1 ID=prot_E_fasciculatus_S2_contig7308.15499.1|Name=mRNA_E_fasciculatus_S2_contig7308.15499.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=297bp
MGNKESTHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKIKTA
GATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSNSLKLLPGAISTLTKLK
TLRLDSNRLEAIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLR
DNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENS
LRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALE
LAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD*
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mRNA from alignment at E_fasciculatus_S2_contig7308:1245..6454-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7308.15499.1 ID=mRNA_E_fasciculatus_S2_contig7308.15499.1|Name=mRNA_E_fasciculatus_S2_contig7308.15499.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7308:1245..6454- (Ectocarpus fasciculatus EfasUO2)
CTGCACATTGGCATGAATATACATCTCCCGTGAACCTTCAAGCACCGCCA CGACTGCATACGGTGCCAGCACACTGTGTTTCCCAGATCGGGGTGCAGCA TCAGTTTGAGTCTGAATCCCGCAAGGAACAGACAGGAAAACAGCAGTCAC GGTGACTGCACAGCAGTATTAGGAGTACGTGGGAGAACACGGGCAGAACA GAACTTCAAGTTCTCCTGTCCTGCTGCGAGAGCTTGCTGGGAAGAACAAG ACTCGACAGCAGAGCATGGGGAACAAGGAATCGACGCATTCCTCCACGTT CTCAAGGGGCCAGGGCGCCACATCAGACTTCCGGGATGCCTTGACGAGCT TGCCAGGCAGCGCTCCCAAGAACAAGACCGGCAGGTACGTGTACAAATGA AGGCAAACGACCGCCCTTACTGCTCGTGCTGCCGATGCTGTCGTTCTGGG CGTGGAGCAGGTTGCGTAGTACCTTACTGCGGACCTTTGTGAAACTGGGT AGCCAGCGCAAGCGCACCATGTTTGCGGAGCCAGAGAAGTTCCTCGTCCG GTTCAGCGCAGAAAATGTACATTTTTTGTCCACACGACCCTACCTCCCCA TCGCCGACCCCTCTCTTCCTCCAAAGCTCATCAGCAACAGCAGGTGGGGC ACTTATCTGTATTTTGGTGTCCAGCAAGAGTTTTGAGGGAGATTCTTGAG ATTCCAATCCTGCAACATTCACTACACAAGCATTGAAGGCGCAACTCTGA GCTGTTGTTCTTTCCCATCATCTCCCCCCCTCCCTCTCACGCAAACACGA AAGACTAAAGACCCTCTTGCGCTCCTCTGGCGTGCCTACGACTGCATACC ATCACAATAGTTGTCTAGTTTTATCGCCATCCGGCGCCATCGCTGACCTC CCCAGAATCGATGCCATCGCTCTGTGATCCAATCACGCAGGAAAGTGACG GCCCAAAAGATAAAGACAGCGGGAGCCACAGGCGTGCTGGCACTGCAAGA GCATGGCCTTAAGGAAATACCAGAGGGGTTGTTCACGCTGGTCAAGCTCA GGGTGAGATACGGACGGGAACGTGCAAGCAGAATGCCACAAGAACGGCTG GAGTGTATCCATAGGGGGCTTAGCTCTATCGATCAGCAAGGATCAACGTT TTGTGCGAGTTTTCTGTGTTTCCTCTTGGGCGCTAGCAGTTTCAGTGTCA TTGGCTGGTGCGTCCAACATACACAGAATCGGGAAGACTCACGGCGGAAT GTATGTGGCGGAAACACACACACCCTATTGTACGTATTGTACATAGATCA TGACATTCAGAGGCATTTTCTGTTTTCAGCCGCACTGAGACTGGCGAGTT TTCACTGGTCAGCCGATAAGCGCGGTCGTTGTTGTTGTTGTTGTTGTTGT TGTAGTTGCTGCTGTCTTCACAAGTCGTTGCTTCTAAAATATGCCTACAA TTTACACGCATGCTTGGCCCCCTCCTCGAATCGGGTGGGTAAACAACTAT GCTGCCTGTCGGTGCTTGTATTTTGTGTGTGTGTGTGTGTGTGCGTTGCG CCGTGGTTGCTCCTCCTGTACAGACGTTAAACATGTCGTCCAACTCCCTC AAGCTCCTGCCGGGGGCGATAAGCACCCTCACCAAGCTCAAGACCCTGCG ACTCGATTCCAACAGGCTCGAGGTGCGTACCTCTTCCCACTGACTGTTGC CGGCGTCTGCCCGCGTGAAACGTTTCTTTCCCCGGGCGGAGGAAAACTAA CAAACCGTGGACCCGTGTGTCGGCATGACTGTGCGTTATACTCGTCTCTC TCCTGTAGTTGAGTTTGTGAGTGTTTCTGTAGTTGGCAGGAACCCCTGGA ACGACTGGCAAAACCGTGGCGCGCTGTACCTACGGCTTAACAAACGACAG CGTGCGACTGGCCTCCGCCCTCCCCCGCTCCATCTGCAATGAGACGCGCG TGAAAAGGCCCAGAGACTGAGACATTCAGCTCTTAAAGCACCTCGCAAAA AGCCCTGCTTTGAAGAAGCTGGAAGAATGGTAACATGAGTGACGTCGCTT GTAGCAGGGCCAACAAAAGGAACTATGCATACGTACAAATTCACCTCCGC ATCTCCTCCCCCGCCACCCGCGCCGTCTTGAAGAATGATTTCGTGGCCAA TGGCCCAAAACCCCAGGATAGCCAACCATTGAGGATGACCCCCACTTCCC CCCGCGACCCTGTCTCACGGGTTTGGTCGGTGCTGTGCAGGCTATCCCGG ACCTCAGCGCGCTTTCTTCCCTGACGGACGTCTCCGCGGGATCGAACCGG CTCGCCGGGGCAGGAGCTTTGGGGGCGCTGCCGGCGTGCCTGACGAAGCT GATGCTGCGGGATAACAGCCTGGGGGAGGTGCCGGCAGCGGTGCTGGACG GGCTTCCGGCACTTCAGGTCAACACCCGAAAGCAGCATGGATCCCTTGAT CAGTCGGGGTTTTTTGGGGGGGGAGAGGAGGGTGCGGGGAAAATATGTTG CCTCGACATGGTGCGTTAGAAGCGCGTTACTGCCATCCGACCTTTTCGAA ATGTGTTGGTGCTTGGAGAAGAAGGTACAAGGCGATGCCTACAAGTACTG CTGTTGGAGTCACTCAAACACACTTGTCGGCACGTTGCGGAGAAACGTCG AAGAGCCTGAACATGGGCGGGCTTTGACGGGGGATTGACTTCGTGAGTCT TCCTCTCAAGAATAATTAGTCTTGCTACACCGCGGGTTGTCCCCATATAG TCTTGACAGCGTGCTTTTCTGTAACGGCGGAGTTGGCCATCAATGAGAAG GCTCCGAAACACTAGCTGCGCTTAAGCTAGATTGACTTGCGTTTCCTGGC GTGAATGCTGGGGGAGTTGGCTTGGAGCATCGGATTCGCGCTGGCATGAC GCTCTCTGCGCCAGCAGCGAAGCAATTATTGTAGAGCACAATCAGCCGGT GGTTGAACGGTCAACATCAGCAATGACCCATTTCAATCGCAATGCCGGAG CACGAGGCGTTGCGATTCAACATTTCAACACACTAACCCGCACCCGTTCG TGATCCGTGGCCGAACCAGGTGCTGGACCTATCAGCAAACGGGATCGAAG GTCTGCCACCCTTCGGAGCCACGCTTCCGGCGCTGGCGGAGCTAATCCTG GACGAGAACTCGTTGCGGGCATTGGGAGACGAACTGGTGGGGCTGTCGAA GCTCAAGAAGCTCTCGGCGAGGTCGAACCGCATCGCGGCCGTGGACCCGT TCAGCGGGCAACAGGTAGTCAGTCATTAGCGAGAAAAATAAAGTAGCGAC ATAGAAAAGAGTTTTGCTGTTCTCCATCTGGGGATGTCTTTCCTTTTAAG CGTGTGTATCGATAGGCTGATGTCGCACGGTGTATGGGGAGAGCAGCGCG TAGGAGGTACTTTTGTGTGTTGACGTTGATTGTGGTTTTCAAAATTCAGC TGCAAATCACTGTACGTGCGCACGCAATGCGCCACACCCGACCTTGCCCT TGGTGCTGTCCCCTTCTTCCGCGGCTGCTGTTTTCGACCGTGGCGATTTC CCGAGGATTGCTGTTTCGCTTTACGAATTGCTGTTGTCTCCACATGAACA ACCGTTCCGATCTCTCTCTCTATCCAGTACATACCCCCTCTGCCCGTACT GATCCAACACTTAACTTAGCGCGGTCTACTTCAACGAAAATTGTTGACTG ATGTATTGTGCGGTGTCCATAGTTGATTTCACGAGCGGGGTCTTTGGTCG CTTGTGTCCGCGCTCCTCCCGGTACCCAGGCGTGTCAGTATTCTCCCTCG CCCGTTGGTCTCCCGAGCTTGCCGTTCATCTTTCGGAAGCAAAGCATTGC CCTTGCCCGCTACACCCTCGTACCCCGGCCTTCCTGGGCTTCTGAAAACA TCGTGCACGTACATAAGGAGCACGAAACCTGCGCGTAAAGCTGCTAGTGT GATACCCACCCCGAAAAACAACCGTGTTTGCTGCACTCTTTTTTTTTTTT TTGCACGACCGCCCCTGCCGCCGCACGCTTGTTCGGGTCGCAGTCCATAT CTCGAGGGCTGTTCGCCGACTCTGCCGTGGAGGCCCTGGAGCTCGCGGGA AACCCCCTCGACAAGACGGACCTGATGCGCATGGAAGGGGTCGACGACTT CCTGGCCCGCAGAGAGAAGAACAAGAACAAGAACTTGCAGGGGGGAGGGA TGCTGACGCTGTCTGTCTGCGGCCTGGATTAACAAGCGTTTCGCTTTCAT TGATTGAGCCTCCGCCCGGGGGGAGGGGTGGTACCACCGCAATGGCCTGC GGCGGTGAATATATGATTTGTTTATTGGTTGGAGGTTTTCGTTTTCGTCA TAAGTCTGTATGTAGTGCCTCCGACATAGATACCCTTCAAGAGAGCGAAA AGGTGCCGGCAGTTGTCTGATTGGCCACTTTGTTTCGTGCCCCATTGATG AAGGGCAAAGTAGGCGCAGCCAAAGGCGCAGCCAAAGGCGCAGCCAAAGG CGCGCGCTTGTTTGCTATGTATCCCCATGCCTTTTTCGTCTTGGCACGGA ACCTAAGTAGTGTATTGTGTGTTTTGGTACTGTGTGTGGCACGCTTGAGT TCACTGCTGCACGGCAAGTGCATCCATGTGACGGCATAAATGTGTACCAG CCCTCGTGCAGCCGCAGGCTGCAGCGGTTCCCGAGTAAGGGTAGGCTGAA GCACCGGGGGGGTTTTGTCCATACTGGTATTTGAGTGTAGCTTGAGTGGT GGCATCGACAACAACCTTTTGATTGCTTTTTTTTCGTCTCATCTCCTTCC TGTGGTATTATTGTTGTGGCCCTGTTTCATCTCCACGCAGACTTTGTTTT TCAATACCCCTTGTGCGGTTCGCACCTAGATGTGTACGAGCTTTTGGGCA ACTTGCGGTTTACGTTTTGTTTTTTGTGCCTCGACGGTGACGGGCCCATC GCTTCCCATGAGTTGCGATCGCTGAGATCACGGTCGCCACAGGCTGGTAC CCTCCGTCCAGAAGGGCTTTGTTGTGGTGGTTGATGCGACCGTTGTCGAT GATTCCGCCCCGAACGGCTGCTGTCGTCTGTGTGTGATGGCGGTGTGGTT GCCTTCCGGAAGGGCTGTTGCAGAAGCATCAGGGCGGCTTCGTTGACGGA GGGAGGAGGAGAAGGGCATAGCTGCTGCCCCAAGTTGCGCGCTGTTCATG AAAGTACGTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7308:1245..6454-

>mRNA_E_fasciculatus_S2_contig7308.15499.1 ID=mRNA_E_fasciculatus_S2_contig7308.15499.1|Name=mRNA_E_fasciculatus_S2_contig7308.15499.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=891bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7308:1245..6454- (Ectocarpus fasciculatus EfasUO2)
ATGGGGAACAAGGAATCGACGCATTCCTCCACGTTCTCAAGGGGCCAGGG
CGCCACATCAGACTTCCGGGATGCCTTGACGAGCTTGCCAGGCAGCGCTC
CCAAGAACAAGACCGGCAGGAAAGTGACGGCCCAAAAGATAAAGACAGCG
GGAGCCACAGGCGTGCTGGCACTGCAAGAGCATGGCCTTAAGGAAATACC
AGAGGGGTTGTTCACGCTGGTCAAGCTCAGGACGTTAAACATGTCGTCCA
ACTCCCTCAAGCTCCTGCCGGGGGCGATAAGCACCCTCACCAAGCTCAAG
ACCCTGCGACTCGATTCCAACAGGCTCGAGGCTATCCCGGACCTCAGCGC
GCTTTCTTCCCTGACGGACGTCTCCGCGGGATCGAACCGGCTCGCCGGGG
CAGGAGCTTTGGGGGCGCTGCCGGCGTGCCTGACGAAGCTGATGCTGCGG
GATAACAGCCTGGGGGAGGTGCCGGCAGCGGTGCTGGACGGGCTTCCGGC
ACTTCAGGTGCTGGACCTATCAGCAAACGGGATCGAAGGTCTGCCACCCT
TCGGAGCCACGCTTCCGGCGCTGGCGGAGCTAATCCTGGACGAGAACTCG
TTGCGGGCATTGGGAGACGAACTGGTGGGGCTGTCGAAGCTCAAGAAGCT
CTCGGCGAGGTCGAACCGCATCGCGGCCGTGGACCCGTTCAGCGGGCAAC
AGTCCATATCTCGAGGGCTGTTCGCCGACTCTGCCGTGGAGGCCCTGGAG
CTCGCGGGAAACCCCCTCGACAAGACGGACCTGATGCGCATGGAAGGGGT
CGACGACTTCCTGGCCCGCAGAGAGAAGAACAAGAACAAGAACTTGCAGG
GGGGAGGGATGCTGACGCTGTCTGTCTGCGGCCTGGATTAA
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