mRNA_E_fasciculatus_S2_contig730.15493.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig730.15493.1
Unique NamemRNA_E_fasciculatus_S2_contig730.15493.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ33_ECTSI)

HSP 1 Score: 893 bits (2308), Expect = 0.000e+0
Identity = 496/565 (87.79%), Postives = 508/565 (89.91%), Query Frame = 2
Query:   53 MVGASSSESLSDEFNVSNPPPQPTGLPGQANRDGVPIVARVPEGGGGSRAASMLRREQQAGFTVFSNPGAREHVCRSTAVLPRQDGGAQERPVATGDTSIDETKEEHSTRARSDQHWISALALPRPVSSPAAQEVVEEVNSSRRTAERETSESQGVGMAGSAAAEQHLPVDIGIGGTLEAAPTGLAALRALGSDSTQSLDSGPRLGRESGSIQASQHGMEEGTGGGAASSTREANPGETFGRGDVALPVRELEAAMNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQSAPDNSPLLTTTPSVPDGAPPPAPNAPRPAAAQEGPTASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGGAGDAAGRGSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTPATTAPPHEVA 1747
            M GASSS +L DEF+VS PP QP G PG ANRDG PIVARVPEGGGGSRAASMLRREQQAG T FSNP A EH+CRSTAVLPRQDGGAQE  VATGD SIDET EEHSTR RS QH  SALALPRPVSSPAAQE+VEEVNSSRRTAERETSES GVGMAGSA A QHLP DI IGGT+EAAPT LAALR LGSD T SLDSGPRL RE+GS +AS  GM EGTG GAASSTREAN GET GRGD+ALPVRELEAAMNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQSAP NSP+LTTT SVPDGAPPPAPNAPRPAA +EG  ASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGG A D AGR SD  GRCCSKETIAALPD   PVEGAVG+V  GGVR CVICLSE+DTAGQ LCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGST ATTAPPHEVA
Sbjct:    1 MAGASSS-ALPDEFSVSTPPSQPIGPPGHANRDGAPIVARVPEGGGGSRAASMLRREQQAGLTTFSNPEAGEHLCRSTAVLPRQDGGAQESSVATGDASIDETNEEHSTRTRSGQHLTSALALPRPVSSPAAQELVEEVNSSRRTAERETSESHGVGMAGSATAGQHLPADIDIGGTMEAAPTDLAALRTLGSDRTPSLDSGPRLVREAGSRRASPRGM-EGTGSGAASSTREANAGETSGRGDMALPVRELEAAMNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQSAPGNSPVLTTTSSVPDGAPPPAPNAPRPAAVREGQAASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGEASDTAGRRSDYTGRCCSKETIAALPDASQPVEGAVGEVDGGGVRGCVICLSENDTAGQHLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTLATTAPPHEVA 563          
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE11_9PHAE)

HSP 1 Score: 882 bits (2279), Expect = 1.090e-312
Identity = 495/582 (85.05%), Postives = 507/582 (87.11%), Query Frame = 2
Query:    2 RSSILPPAVSLPISSGSMVGASSSESLSDEFNVSNPPPQPTGLPGQANRDGVPIVARVPEGGGGSRAASMLRREQQAGFTVFSNPGAREHVCRSTAVLPRQDGGAQERPVATGDTSIDETKEEHSTRARSDQHWISALALPRPVSSPAAQEVVEEVNSSRRTAERETSESQGVGMAGSAAAEQHLPVDIGIGGTLEAAPTGLAALRALGSDSTQSLDSGPRLGRESGSIQASQHGMEEGTGGGAASSTREANPGETFGRGDVALPVRELEAAMNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQSAPDNSPLLTTTPSVPDGAPPPAPNAPRPAAAQEGPTASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGGAGDAAGRGSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTPATTAPPHEVA 1747
            RSS+ PPAVSLP SSG MVGASSSES  DEFNVS PPPQP G P  ANRDG PIVARVPEGGGGSRAA MLRREQQAG T FSNP A EH+CRS AVLPRQDGGAQE  VATGDTSIDET EEHSTR RS QH  SALALPRPVSSPA QE+VEEVNSSRRTAERETSES GVGMAGSA A QHLP DIGIGGT+EAAPT LAALR LGSD T SL+S PR  RE+GS +AS  GM EGTG GAASSTRE   GET GRG+VALPVREL    NGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAA ALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQ AP NSP+LTTT SV DG PPPAPN PRP A +EG  ASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGG  D  GRGSD  GRCCSKETIAALPD   PVEGAVG+V  G VR CVICLSE+DTAGQ LCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGST ATTAPPHEVA
Sbjct:  219 RSSVSPPAVSLPTSSGLMVGASSSESPRDEFNVSTPPPQPMGPPRYANRDGAPIVARVPEGGGGSRAAIMLRREQQAGLTAFSNPEAGEHLCRSPAVLPRQDGGAQEGSVATGDTSIDETNEEHSTRTRSGQHLTSALALPRPVSSPAVQELVEEVNSSRRTAERETSESHGVGMAGSATAGQHLPADIGIGGTMEAAPTDLAALRMLGSDRTTSLNSVPRSVREAGSRRASPRGM-EGTGSGAASSTRETYAGETSGRGNVALPVREL----NGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAAALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQLAPGNSPVLTTTSSVSDGTPPPAPNTPRPTAVREGQVASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGGTSDTVGRGSDYTGRCCSKETIAALPDASQPVEGAVGEVDGGDVRGCVICLSENDTAGQHLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTLATTAPPHEVA 795          
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: E3 (ubiquitin-protein ligase SGR9, amyloplastic n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CF950E3)

HSP 1 Score: 68.9 bits (167), Expect = 4.040e-9
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 2
Query: 1478 IAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
            +AA P V + +     QV SGG   CVIC  E +  G+D+C+LPC H+FH +C+  WL  +++CP CR Q+P  ++
Sbjct:  178 VAAAPAVVVALPSV--QVSSGGAVECVICKEEMNK-GRDVCKLPCEHLFHWMCILPWLRKRNTCPCCRFQLPTDDV 250          
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: E3 (ubiquitin-protein ligase SGR9, amyloplastic n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005C94AB1)

HSP 1 Score: 69.3 bits (168), Expect = 5.210e-9
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 2
Query: 1466 SKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
            SK  + ALP V         +V SGG + CVIC  E     +D+C LPC H+FH VC+ +WLS +++CP CR  +P  ++
Sbjct:  222 SKAVVVALPSV---------EVKSGGTKECVICKEEM-AENRDVCELPCRHLFHWVCILRWLSKRNTCPCCRFGLPTDDV 291          
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: Zinc (finger family protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KC51_TRIPR)

HSP 1 Score: 64.3 bits (155), Expect = 7.130e-9
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 2
Query: 1439 GSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
            G +V     S  T+ +LP V + V G          R CVIC  E    G+D+C+LPC H+FH +C+  WL  +++CP CR ++P+ ++
Sbjct:   16 GKEVKEVAASAATVVSLPAVVVSVGG----------RECVICKDEM-RVGRDVCQLPCQHLFHWMCILPWLGNKNTCPCCRFRLPSDDV 93          
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: RING/U-box (superfamily protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QEX3_STRAF)

HSP 1 Score: 65.9 bits (159), Expect = 7.480e-9
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 2
Query: 1517 AVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
            A+  V + G   C IC  E   AG+++C LPC H+FH +CV +WL  +D+CP CRR++P+ ++
Sbjct:   79 ALPSVAADGGGECAICREEMG-AGREVCELPCGHLFHWICVLRWLGRRDTCPCCRRRLPSDDV 140          
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NN72_TRISU)

HSP 1 Score: 64.7 bits (156), Expect = 1.080e-8
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = 2
Query: 1439 GSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
            G +V     S  T+ +LP V + V G          R CVIC  E    G+D+C LPC H+FH +C+  WL  +++CP CR ++P+ ++
Sbjct:   40 GKEVKEVAASAATVVSLPAVEVSVGG----------RECVICKEEM-RVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDV 117          
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: E3 (ubiquitin-protein ligase SGR9, amyloplastic-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263AEFB)

HSP 1 Score: 67.4 bits (163), Expect = 1.410e-8
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 2
Query: 1376 SRMQGYLADLAGGGAGDAAGRGSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
            +R + +L+ + GGG       G +VA    +  T+ ALP V         QV  GG   CVIC  E +  G+D+C+LPC H+FH +C+  WL  +++CP CR ++P  ++
Sbjct:  161 TRCRRFLSVMGGGGK-----AGREVA---AASATVVALPSV---------QVSGGGGLECVICKEEINE-GRDVCKLPCEHLFHWMCILPWLRKRNTCPCCRYRLPTDDV 252          
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: E3 (ubiquitin-protein ligase SGR9, amyloplastic-like n=6 Tax=Nicotiana TaxID=4085 RepID=A0A1S3Z0L1_TOBAC)

HSP 1 Score: 67.8 bits (164), Expect = 1.500e-8
Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 2
Query: 1433 GRGSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
            G G D      S   + ALP V         +V SG  R CVIC  E    G+D+C+LPC+H+FH  C+  WL   ++CP CR Q+P+ ++
Sbjct:  203 GEGKDSKKLATSVAVVVALPSV---------EVLSGSERECVICKEEM-REGRDVCKLPCDHIFHWKCILPWLKKMNTCPCCRFQLPSDDV 283          
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: E3 (ubiquitin-protein ligase SGR9, amyloplastic n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CEC5D)

HSP 1 Score: 68.6 bits (166), Expect = 1.580e-8
Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 2
Query: 1415 GAGDAAGRGSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
            G GD    G +VA    S   + ALP V +          SGG R CVIC  E    G+D+C LPCNH+FH +C+  WL  +++CP CR ++P  ++
Sbjct:  270 GGGDEGKDGREVA---TSVAAVVALPSVEV----------SGGGRECVICKEEM-IKGRDVCELPCNHLFHWMCILPWLKKRNTCPCCRSRLPTNDV 352          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RING-type0.000e+087.79domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RING-type1.090e-31285.05domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
E34.040e-942.11ubiquitin-protein ligase SGR9, amyloplastic n=1 Ta... [more]
E35.210e-941.25ubiquitin-protein ligase SGR9, amyloplastic n=1 Ta... [more]
Zinc7.130e-935.96finger family protein (Fragment) n=1 Tax=Trifolium... [more]
RING/U-box7.480e-942.86superfamily protein n=1 Tax=Striga asiatica TaxID=... [more]
RING-type1.080e-835.96domain-containing protein n=1 Tax=Trifolium subter... [more]
E31.410e-835.45ubiquitin-protein ligase SGR9, amyloplastic-like n... [more]
E31.500e-838.46ubiquitin-protein ligase SGR9, amyloplastic-like n... [more]
E31.580e-839.18ubiquitin-protein ligase SGR9, amyloplastic n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig730contigE_fasciculatus_S2_contig730:14929..17197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score904.8
Seed ortholog evalue2e-260
Seed eggNOG ortholog2880.D7FQ33
Model size2269
KEGG koko:K16274
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
Cds size1698
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842394.4556992-UTR-E_fasciculatus_S2_contig730:14928..149801696842394.4556992-UTR-E_fasciculatus_S2_contig730:14928..14980Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig730 14929..14980 +
1696842394.48417-UTR-E_fasciculatus_S2_contig730:16678..171971696842394.48417-UTR-E_fasciculatus_S2_contig730:16678..17197Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig730 16679..17197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842394.4685752-CDS-E_fasciculatus_S2_contig730:14980..166781696842394.4685752-CDS-E_fasciculatus_S2_contig730:14980..16678Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig730 14981..16678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig730.15493.1prot_E_fasciculatus_S2_contig730.15493.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig730 14981..16678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig730.15493.1

>prot_E_fasciculatus_S2_contig730.15493.1 ID=prot_E_fasciculatus_S2_contig730.15493.1|Name=mRNA_E_fasciculatus_S2_contig730.15493.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=566bp
MVGASSSESLSDEFNVSNPPPQPTGLPGQANRDGVPIVARVPEGGGGSRA
ASMLRREQQAGFTVFSNPGAREHVCRSTAVLPRQDGGAQERPVATGDTSI
DETKEEHSTRARSDQHWISALALPRPVSSPAAQEVVEEVNSSRRTAERET
SESQGVGMAGSAAAEQHLPVDIGIGGTLEAAPTGLAALRALGSDSTQSLD
SGPRLGRESGSIQASQHGMEEGTGGGAASSTREANPGETFGRGDVALPVR
ELEAAMNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVS
TLSDIVNSFGRTVAAAGALPHGEDSSLGRISSDVVSTLRRMLRLLSATVP
AATAAQSAPDNSPLLTTTPSVPDGAPPPAPNAPRPAAAQEGPTASGSAGT
YSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLAD
LAGGGAGDAAGRGSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRA
CVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVE
IGSTPATTAPPHEVA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig730:14929..17197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig730.15493.1 ID=mRNA_E_fasciculatus_S2_contig730.15493.1|Name=mRNA_E_fasciculatus_S2_contig730.15493.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2269bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig730:14929..17197+ (Ectocarpus fasciculatus EfasUO2)
GAGGAGTTCAATTTTACCCCCGGCTGTGTCTCTGCCTATTTCTTCTGGGT CGATGGTGGGAGCTTCGTCGAGCGAGTCACTATCTGACGAGTTCAATGTT TCAAACCCGCCGCCACAGCCGACAGGACTTCCTGGGCAAGCCAACAGAGA CGGTGTACCCATCGTTGCCCGGGTGCCAGAAGGCGGCGGAGGGTCACGTG CGGCCAGTATGCTGAGAAGGGAACAACAAGCCGGTTTCACCGTATTCAGC AACCCAGGGGCTCGGGAACATGTTTGTCGGTCAACTGCTGTCTTGCCAAG GCAAGATGGTGGAGCACAAGAAAGACCTGTCGCCACTGGAGACACATCGA TTGACGAGACGAAAGAGGAGCATAGCACGCGGGCGAGGTCGGATCAACAT TGGATATCTGCGCTTGCGCTACCGCGCCCGGTGTCCTCGCCAGCAGCACA GGAAGTTGTTGAGGAGGTCAACAGTAGTAGGAGGACGGCGGAGCGAGAAA CAAGCGAAAGCCAAGGTGTTGGAATGGCGGGATCGGCCGCCGCGGAACAA CACCTTCCCGTAGACATCGGCATTGGTGGGACATTGGAAGCAGCACCTAC TGGCCTCGCTGCCTTGAGAGCGCTCGGCAGCGACAGCACTCAGTCTCTGG ACAGTGGGCCGCGTTTGGGTCGAGAATCTGGAAGCATACAGGCGTCTCAG CACGGGATGGAAGAAGGAACGGGCGGCGGTGCCGCCTCGTCAACACGTGA GGCAAACCCCGGCGAAACCTTCGGCCGCGGTGACGTGGCTCTCCCGGTCC GGGAGCTGGAAGCAGCTATGAATGGCATCGATACCGAGCGGGGGAGGCTG ATCTTGGAGATCGCTCGGCTCCGTGGGCAGCAGAACCAATCTCTAGTCCA TCTCCATCGCCTCCAGCACGAGCAGTTTGTCGTGCGCCAGCGGCAGGTGT CCACCCTGTCCGATATTGTCAACAGCTTTGGTCGAACCGTGGCGGCGGCG GGCGCGCTCCCTCACGGAGAGGACTCTTCTCTGGGGCGCATCAGCAGCGA CGTTGTGTCCACGCTGCGGCGGATGCTCCGGCTCTTGTCCGCGACGGTCC CCGCTGCGACTGCCGCACAGTCAGCCCCGGACAACTCTCCTCTGCTGACG ACGACGCCTTCAGTACCCGATGGCGCCCCGCCCCCCGCGCCCAACGCACC ACGCCCAGCCGCTGCACAAGAAGGACCGACAGCCAGCGGCTCCGCCGGCA CTTACTCCGTGGGAGGGCGGGTGGCGCTACGGCCCGCCGGAGTGGACCTC ACGCAAGAGGTGATCGACGCCGCCCTCCAGGCGCTTCCCCGATTGGCGGC CGCGGCGACGGCGATATCGGGGGCAAGTCGCATGCAAGGATACCTTGCGG ACCTGGCCGGTGGCGGAGCAGGCGATGCCGCGGGGCGTGGGAGCGACGTC GCTGGTCGCTGCTGCTCGAAAGAGACTATTGCCGCGCTCCCGGATGTCCC TCTACCCGTGGAGGGGGCTGTTGGACAAGTTGGCAGCGGTGGTGTTCGGG CGTGCGTGATCTGCCTGTCGGAGAGTGACACGGCGGGGCAGGACCTGTGT CGCCTCCCCTGCAACCACGTCTTCCACAGGGTCTGTGTTGGGAAGTGGCT CTCGATGCAGGATTCGTGTCCGACCTGTAGGAGGCAAGTGCCTAATGTCG AAATTGGCTCCACTCCCGCAACTACGGCGCCCCCCCATGAAGTGGCGTGA ACTTTAACGTTAGCAATGTGTGTCTCTTTGTGTGGACGGTATGCCCCAGG ACTGTAAGTTAGAGGTGGTTTTGTTTTGGGCGCCTTCGCGCGCATGTGTT GACCTGTCTGTTTTGATGCACACCCTTGGTTGCATGTCTGAACTTAATTG TACGTGAGTCTGTGTTCGCGTCTGTGTTCGTACTTTACAGTGTACGTGCT TTTTGCTCTGTGTGTTGTACCTGGTTACGTCGTGAAAAATATCGGAAGCA TTGTAGATGGGTGAGCTGTCCTGCATAGCTTTCGTCGGAACCACGATCTC TGGTAGATTTATAGCATGTTGCATATGCATATAAATGCATACGCGTACCT GTTTCGGGTGTTTGACGCCCTCCCCATGGAGACCCACATCCACCTCATCT TTCAGTGGTGTTGACCGCGCCACTTGTGTCAACATGACAAGAAGAAGAAT CAGTTGGGCTGCGGATACGCCTGCATCACCCCGCCTTAACATGTGTACTT GGTAAAAAAATGAACGGAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig730:14929..17197+

>mRNA_E_fasciculatus_S2_contig730.15493.1 ID=mRNA_E_fasciculatus_S2_contig730.15493.1|Name=mRNA_E_fasciculatus_S2_contig730.15493.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1698bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig730:14929..17197+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGGGAGCTTCGTCGAGCGAGTCACTATCTGACGAGTTCAATGTTTC
AAACCCGCCGCCACAGCCGACAGGACTTCCTGGGCAAGCCAACAGAGACG
GTGTACCCATCGTTGCCCGGGTGCCAGAAGGCGGCGGAGGGTCACGTGCG
GCCAGTATGCTGAGAAGGGAACAACAAGCCGGTTTCACCGTATTCAGCAA
CCCAGGGGCTCGGGAACATGTTTGTCGGTCAACTGCTGTCTTGCCAAGGC
AAGATGGTGGAGCACAAGAAAGACCTGTCGCCACTGGAGACACATCGATT
GACGAGACGAAAGAGGAGCATAGCACGCGGGCGAGGTCGGATCAACATTG
GATATCTGCGCTTGCGCTACCGCGCCCGGTGTCCTCGCCAGCAGCACAGG
AAGTTGTTGAGGAGGTCAACAGTAGTAGGAGGACGGCGGAGCGAGAAACA
AGCGAAAGCCAAGGTGTTGGAATGGCGGGATCGGCCGCCGCGGAACAACA
CCTTCCCGTAGACATCGGCATTGGTGGGACATTGGAAGCAGCACCTACTG
GCCTCGCTGCCTTGAGAGCGCTCGGCAGCGACAGCACTCAGTCTCTGGAC
AGTGGGCCGCGTTTGGGTCGAGAATCTGGAAGCATACAGGCGTCTCAGCA
CGGGATGGAAGAAGGAACGGGCGGCGGTGCCGCCTCGTCAACACGTGAGG
CAAACCCCGGCGAAACCTTCGGCCGCGGTGACGTGGCTCTCCCGGTCCGG
GAGCTGGAAGCAGCTATGAATGGCATCGATACCGAGCGGGGGAGGCTGAT
CTTGGAGATCGCTCGGCTCCGTGGGCAGCAGAACCAATCTCTAGTCCATC
TCCATCGCCTCCAGCACGAGCAGTTTGTCGTGCGCCAGCGGCAGGTGTCC
ACCCTGTCCGATATTGTCAACAGCTTTGGTCGAACCGTGGCGGCGGCGGG
CGCGCTCCCTCACGGAGAGGACTCTTCTCTGGGGCGCATCAGCAGCGACG
TTGTGTCCACGCTGCGGCGGATGCTCCGGCTCTTGTCCGCGACGGTCCCC
GCTGCGACTGCCGCACAGTCAGCCCCGGACAACTCTCCTCTGCTGACGAC
GACGCCTTCAGTACCCGATGGCGCCCCGCCCCCCGCGCCCAACGCACCAC
GCCCAGCCGCTGCACAAGAAGGACCGACAGCCAGCGGCTCCGCCGGCACT
TACTCCGTGGGAGGGCGGGTGGCGCTACGGCCCGCCGGAGTGGACCTCAC
GCAAGAGGTGATCGACGCCGCCCTCCAGGCGCTTCCCCGATTGGCGGCCG
CGGCGACGGCGATATCGGGGGCAAGTCGCATGCAAGGATACCTTGCGGAC
CTGGCCGGTGGCGGAGCAGGCGATGCCGCGGGGCGTGGGAGCGACGTCGC
TGGTCGCTGCTGCTCGAAAGAGACTATTGCCGCGCTCCCGGATGTCCCTC
TACCCGTGGAGGGGGCTGTTGGACAAGTTGGCAGCGGTGGTGTTCGGGCG
TGCGTGATCTGCCTGTCGGAGAGTGACACGGCGGGGCAGGACCTGTGTCG
CCTCCCCTGCAACCACGTCTTCCACAGGGTCTGTGTTGGGAAGTGGCTCT
CGATGCAGGATTCGTGTCCGACCTGTAGGAGGCAAGTGCCTAATGTCGAA
ATTGGCTCCACTCCCGCAACTACGGCGCCCCCCCATGAAGTGGCGTGA
back to top