mRNA_E_fasciculatus_S2_contig730.15493.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ33_ECTSI) HSP 1 Score: 893 bits (2308), Expect = 0.000e+0 Identity = 496/565 (87.79%), Postives = 508/565 (89.91%), Query Frame = 2
Query: 53 MVGASSSESLSDEFNVSNPPPQPTGLPGQANRDGVPIVARVPEGGGGSRAASMLRREQQAGFTVFSNPGAREHVCRSTAVLPRQDGGAQERPVATGDTSIDETKEEHSTRARSDQHWISALALPRPVSSPAAQEVVEEVNSSRRTAERETSESQGVGMAGSAAAEQHLPVDIGIGGTLEAAPTGLAALRALGSDSTQSLDSGPRLGRESGSIQASQHGMEEGTGGGAASSTREANPGETFGRGDVALPVRELEAAMNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQSAPDNSPLLTTTPSVPDGAPPPAPNAPRPAAAQEGPTASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGGAGDAAGRGSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTPATTAPPHEVA 1747
M GASSS +L DEF+VS PP QP G PG ANRDG PIVARVPEGGGGSRAASMLRREQQAG T FSNP A EH+CRSTAVLPRQDGGAQE VATGD SIDET EEHSTR RS QH SALALPRPVSSPAAQE+VEEVNSSRRTAERETSES GVGMAGSA A QHLP DI IGGT+EAAPT LAALR LGSD T SLDSGPRL RE+GS +AS GM EGTG GAASSTREAN GET GRGD+ALPVRELEAAMNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQSAP NSP+LTTT SVPDGAPPPAPNAPRPAA +EG ASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGG A D AGR SD GRCCSKETIAALPD PVEGAVG+V GGVR CVICLSE+DTAGQ LCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGST ATTAPPHEVA
Sbjct: 1 MAGASSS-ALPDEFSVSTPPSQPIGPPGHANRDGAPIVARVPEGGGGSRAASMLRREQQAGLTTFSNPEAGEHLCRSTAVLPRQDGGAQESSVATGDASIDETNEEHSTRTRSGQHLTSALALPRPVSSPAAQELVEEVNSSRRTAERETSESHGVGMAGSATAGQHLPADIDIGGTMEAAPTDLAALRTLGSDRTPSLDSGPRLVREAGSRRASPRGM-EGTGSGAASSTREANAGETSGRGDMALPVRELEAAMNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQSAPGNSPVLTTTSSVPDGAPPPAPNAPRPAAVREGQAASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGEASDTAGRRSDYTGRCCSKETIAALPDASQPVEGAVGEVDGGGVRGCVICLSENDTAGQHLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTLATTAPPHEVA 563
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE11_9PHAE) HSP 1 Score: 882 bits (2279), Expect = 1.090e-312 Identity = 495/582 (85.05%), Postives = 507/582 (87.11%), Query Frame = 2
Query: 2 RSSILPPAVSLPISSGSMVGASSSESLSDEFNVSNPPPQPTGLPGQANRDGVPIVARVPEGGGGSRAASMLRREQQAGFTVFSNPGAREHVCRSTAVLPRQDGGAQERPVATGDTSIDETKEEHSTRARSDQHWISALALPRPVSSPAAQEVVEEVNSSRRTAERETSESQGVGMAGSAAAEQHLPVDIGIGGTLEAAPTGLAALRALGSDSTQSLDSGPRLGRESGSIQASQHGMEEGTGGGAASSTREANPGETFGRGDVALPVRELEAAMNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQSAPDNSPLLTTTPSVPDGAPPPAPNAPRPAAAQEGPTASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGGAGDAAGRGSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTPATTAPPHEVA 1747
RSS+ PPAVSLP SSG MVGASSSES DEFNVS PPPQP G P ANRDG PIVARVPEGGGGSRAA MLRREQQAG T FSNP A EH+CRS AVLPRQDGGAQE VATGDTSIDET EEHSTR RS QH SALALPRPVSSPA QE+VEEVNSSRRTAERETSES GVGMAGSA A QHLP DIGIGGT+EAAPT LAALR LGSD T SL+S PR RE+GS +AS GM EGTG GAASSTRE GET GRG+VALPVREL NGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAA ALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQ AP NSP+LTTT SV DG PPPAPN PRP A +EG ASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGG D GRGSD GRCCSKETIAALPD PVEGAVG+V G VR CVICLSE+DTAGQ LCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGST ATTAPPHEVA
Sbjct: 219 RSSVSPPAVSLPTSSGLMVGASSSESPRDEFNVSTPPPQPMGPPRYANRDGAPIVARVPEGGGGSRAAIMLRREQQAGLTAFSNPEAGEHLCRSPAVLPRQDGGAQEGSVATGDTSIDETNEEHSTRTRSGQHLTSALALPRPVSSPAVQELVEEVNSSRRTAERETSESHGVGMAGSATAGQHLPADIGIGGTMEAAPTDLAALRMLGSDRTTSLNSVPRSVREAGSRRASPRGM-EGTGSGAASSTRETYAGETSGRGNVALPVREL----NGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAAALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQLAPGNSPVLTTTSSVSDGTPPPAPNTPRPTAVREGQVASGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGGTSDTVGRGSDYTGRCCSKETIAALPDASQPVEGAVGEVDGGDVRGCVICLSENDTAGQHLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTLATTAPPHEVA 795
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: E3 (ubiquitin-protein ligase SGR9, amyloplastic n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CF950E3) HSP 1 Score: 68.9 bits (167), Expect = 4.040e-9 Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 2
Query: 1478 IAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
+AA P V + + QV SGG CVIC E + G+D+C+LPC H+FH +C+ WL +++CP CR Q+P ++
Sbjct: 178 VAAAPAVVVALPSV--QVSSGGAVECVICKEEMNK-GRDVCKLPCEHLFHWMCILPWLRKRNTCPCCRFQLPTDDV 250
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: E3 (ubiquitin-protein ligase SGR9, amyloplastic n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005C94AB1) HSP 1 Score: 69.3 bits (168), Expect = 5.210e-9 Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 2
Query: 1466 SKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
SK + ALP V +V SGG + CVIC E +D+C LPC H+FH VC+ +WLS +++CP CR +P ++
Sbjct: 222 SKAVVVALPSV---------EVKSGGTKECVICKEEM-AENRDVCELPCRHLFHWVCILRWLSKRNTCPCCRFGLPTDDV 291
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: Zinc (finger family protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KC51_TRIPR) HSP 1 Score: 64.3 bits (155), Expect = 7.130e-9 Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 2
Query: 1439 GSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
G +V S T+ +LP V + V G R CVIC E G+D+C+LPC H+FH +C+ WL +++CP CR ++P+ ++
Sbjct: 16 GKEVKEVAASAATVVSLPAVVVSVGG----------RECVICKDEM-RVGRDVCQLPCQHLFHWMCILPWLGNKNTCPCCRFRLPSDDV 93
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: RING/U-box (superfamily protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QEX3_STRAF) HSP 1 Score: 65.9 bits (159), Expect = 7.480e-9 Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 2
Query: 1517 AVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
A+ V + G C IC E AG+++C LPC H+FH +CV +WL +D+CP CRR++P+ ++
Sbjct: 79 ALPSVAADGGGECAICREEMG-AGREVCELPCGHLFHWICVLRWLGRRDTCPCCRRRLPSDDV 140
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NN72_TRISU) HSP 1 Score: 64.7 bits (156), Expect = 1.080e-8 Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = 2
Query: 1439 GSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
G +V S T+ +LP V + V G R CVIC E G+D+C LPC H+FH +C+ WL +++CP CR ++P+ ++
Sbjct: 40 GKEVKEVAASAATVVSLPAVEVSVGG----------RECVICKEEM-RVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDV 117
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: E3 (ubiquitin-protein ligase SGR9, amyloplastic-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263AEFB) HSP 1 Score: 67.4 bits (163), Expect = 1.410e-8 Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 2
Query: 1376 SRMQGYLADLAGGGAGDAAGRGSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
+R + +L+ + GGG G +VA + T+ ALP V QV GG CVIC E + G+D+C+LPC H+FH +C+ WL +++CP CR ++P ++
Sbjct: 161 TRCRRFLSVMGGGGK-----AGREVA---AASATVVALPSV---------QVSGGGGLECVICKEEINE-GRDVCKLPCEHLFHWMCILPWLRKRNTCPCCRYRLPTDDV 252
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: E3 (ubiquitin-protein ligase SGR9, amyloplastic-like n=6 Tax=Nicotiana TaxID=4085 RepID=A0A1S3Z0L1_TOBAC) HSP 1 Score: 67.8 bits (164), Expect = 1.500e-8 Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 2
Query: 1433 GRGSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
G G D S + ALP V +V SG R CVIC E G+D+C+LPC+H+FH C+ WL ++CP CR Q+P+ ++
Sbjct: 203 GEGKDSKKLATSVAVVVALPSV---------EVLSGSERECVICKEEM-REGRDVCKLPCDHIFHWKCILPWLKKMNTCPCCRFQLPSDDV 283
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Match: E3 (ubiquitin-protein ligase SGR9, amyloplastic n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CEC5D) HSP 1 Score: 68.6 bits (166), Expect = 1.580e-8 Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 2
Query: 1415 GAGDAAGRGSDVAGRCCSKETIAALPDVPLPVEGAVGQVGSGGVRACVICLSESDTAGQDLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEI 1705
G GD G +VA S + ALP V + SGG R CVIC E G+D+C LPCNH+FH +C+ WL +++CP CR ++P ++
Sbjct: 270 GGGDEGKDGREVA---TSVAAVVALPSVEV----------SGGGRECVICKEEM-IKGRDVCELPCNHLFHWMCILPWLKKRNTCPCCRSRLPTNDV 352 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig730.15493.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig730.15493.1 >prot_E_fasciculatus_S2_contig730.15493.1 ID=prot_E_fasciculatus_S2_contig730.15493.1|Name=mRNA_E_fasciculatus_S2_contig730.15493.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=566bp MVGASSSESLSDEFNVSNPPPQPTGLPGQANRDGVPIVARVPEGGGGSRAback to top mRNA from alignment at E_fasciculatus_S2_contig730:14929..17197+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig730.15493.1 ID=mRNA_E_fasciculatus_S2_contig730.15493.1|Name=mRNA_E_fasciculatus_S2_contig730.15493.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2269bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig730:14929..17197+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig730:14929..17197+ >mRNA_E_fasciculatus_S2_contig730.15493.1 ID=mRNA_E_fasciculatus_S2_contig730.15493.1|Name=mRNA_E_fasciculatus_S2_contig730.15493.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1698bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig730:14929..17197+ (Ectocarpus fasciculatus EfasUO2)back to top |