mRNA_E_fasciculatus_S2_contig7220.15400.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7220.15400.1
Unique NamemRNA_E_fasciculatus_S2_contig7220.15400.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7220.15400.1 vs.
Match: Heat (shock protein 70-putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN9_ECTSI)

HSP 1 Score: 569 bits (1466), Expect = 4.340e-197
Identity = 311/455 (68.35%), Postives = 320/455 (70.33%), Query Frame = 1
Query:    1 KDFVVAIDLGTSCTAFSWKSIVDPAGPSVGVPDMKPNEDIIGKSPTTLLIAGSTGGDKMFRPTGAEAYGREAQLRYANGNIPHGAQLFKRFKMIYDDLLDAVTRSTSRKAEMMLMDIFVIALEYIKSVALRGMTLTHAVTAEHVTWVLTVPVCCSEPAKHFMREAAIKAGFIKGGDDDEGLVLCMEPIAACLALGNRLQWRMRDKYLVIDCGGGTVDISAFEVISSAPPSLQQLGEANGGPWGSTYVDTQFEAYLKASWLG*CCVPKPSKYT*QTLNKPDLCFTCSISF*VLGTGPLLFVRLQSTTAFPGRSKKPCFVAGGTQSTKKKREPSSCSHPSVRLIECQARNNIYVAALNPAVASQRALPTNSPPPRVSPEY*DYVLSVAQEAGGRSLESFFASSASYRIAQAWERAKIGLRSVDHDCRIDLSELSREPLEVTVEEMDEGRRAKNRGGT 1365
            KDFVVAIDLGTSCTAFSWKSIVDPAGPS+GVPDMKPNEDIIGKSPTTLLIAGSTG DKMFRPTGAEAYGREAQ RYANG+IPHGAQLFKRFKMIYDDL+DAVT+STSRKAEMMLMDIFVIALEYIKSVAL GMTLTHAV+AE VTWVLTVPVCCSEPAKHFMREAA KAGFIKGG+DDEGLVLCMEPIAACLALGNRLQWRMRDKYLVIDCGGGTVDISAFEVISSAPPSL+QLGEA+GGPWGST VD  FEAYLK                                                                                                                           D+VLSVAQEAG RSLESFFASSASYRI QAWERAKIGLRSVDHDCRIDLSELSREPLEVT EEMDEGRR KNRGGT
Sbjct:    2 KDFVVAIDLGTSCTAFSWKSIVDPAGPSIGVPDMKPNEDIIGKSPTTLLIAGSTGSDKMFRPTGAEAYGREAQHRYANGDIPHGAQLFKRFKMIYDDLVDAVTKSTSRKAEMMLMDIFVIALEYIKSVALMGMTLTHAVSAEDVTWVLTVPVCCSEPAKHFMREAATKAGFIKGGNDDEGLVLCMEPIAACLALGNRLQWRMRDKYLVIDCGGGTVDISAFEVISSAPPSLEQLGEASGGPWGSTNVDRLFEAYLK---------------------------------------------------------------------------------------------------------------------------DFVLSVAQEAGERSLESFFASSASYRINQAWERAKIGLRSVDHDCRIDLSELSREPLEVTTEEMDEGRRLKNRGGT 333          
BLAST of mRNA_E_fasciculatus_S2_contig7220.15400.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT12_9PHAE)

HSP 1 Score: 373 bits (958), Expect = 1.210e-120
Identity = 213/364 (58.52%), Postives = 228/364 (62.64%), Query Frame = 1
Query:  274 KMIYDDLLDAVTRSTSRKAEMMLMDIFVIALEYIKSVALRGMTLTHAVTAEHVTWVLTVPVCCSEPAKHFMREAAIKAGFIKGGDDDEGLVLCMEPIAACLALGNRLQWRMRDKYLVIDCGGGTVDISAFEVISSAPPSLQQLGEANGGPWGSTYVDTQFEAYLKASWLG*CCVPKPSKYT*QTLNKPDLCFTCSISF*VLGTGPLLFVRLQSTTAFPGRSKKPCFVAGGTQSTKKKREPSSCSHPSVRLIECQARNNIYVAALNPAVASQRALPTNSPPPRVSPEY*DYVLSVAQEAGGRSLESFFASSASYRIAQAWERAKIGLRSVDHDCRIDLSELSREPLEVTVEEMDEGRRAKNRGGT 1365
            + IYDDL+DAVT+STS++AEMMLMDIFVIALEYIKSVALR MTLTH V+A+ VTWVLTVPVCCSEPAKHFMREAA KAGFIKGG DDE LVLCMEPIAACLALG+RLQWRM D+YLVIDCGGGTVDISAFEVISSAPPSL+QLGEA+GGPWGST VD QFEAYLKAS                                                                                                                         D+VLSVAQEAG R+LESFFASSASYRI QAWERAKIGLRS+DHDCRIDLSELSREPLEVT +EMDEGRR KN GGT
Sbjct:   73 QQIYDDLVDAVTKSTSKRAEMMLMDIFVIALEYIKSVALRRMTLTHPVSADDVTWVLTVPVCCSEPAKHFMREAATKAGFIKGGSDDEDLVLCMEPIAACLALGDRLQWRMGDRYLVIDCGGGTVDISAFEVISSAPPSLEQLGEASGGPWGSTNVDRQFEAYLKASG------------------------------------------------------------------------------------------------------------------------DFVLSVAQEAGARALESFFASSASYRINQAWERAKIGLRSLDHDCRIDLSELSREPLEVTKDEMDEGRRLKNIGGT 316          
BLAST of mRNA_E_fasciculatus_S2_contig7220.15400.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS2_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 4.620e-50
Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 1
Query:    1 KDFVVAIDLGTSCTAFSWKSIVDPAGPSVGVPDMKPNEDIIGKSPTTLLIAGSTGGDKMFRPTGAEAYGREAQLRYANGNIPHGAQLFKRFKM 279
            K+FVVAIDLGTSCTAFSWKS+ DPAGPS+GVPDMKPN+DIIGKSPTTLLIAGSTG D+MFRPTGAEAYGREAQ RYA G+IPHGAQLFKRFKM
Sbjct:   36 KEFVVAIDLGTSCTAFSWKSLADPAGPSIGVPDMKPNDDIIGKSPTTLLIAGSTGSDRMFRPTGAEAYGREAQRRYAIGDIPHGAQLFKRFKM 128          
BLAST of mRNA_E_fasciculatus_S2_contig7220.15400.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDD7_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 7.850e-36
Identity = 94/259 (36.29%), Postives = 134/259 (51.74%), Query Frame = 1
Query:   10 VVAIDLGTSCTAFSWKSIVDPAGPSVGVPDMKPNEDIIGKSPTTLLIAGSTGGDKMFRPTGAEAYGREAQLRYANGNIPHGAQLFKRF-----KMIYDDLLDAVTRSTSRKAEMMLMDIFVIALEYIKSVALRGMT-LTHAVTAEHVTWVLTVPVCCSEPAKHFMREAAIKAGFIKGGDDDEGLVLCMEPIAACLALGNRLQWRMRDKYLVIDCGGGTVDISAFEVISSAPPSLQQLGEANGGPWGSTYVDTQFEAYLK 768
            VVAID+G   TA SWKS  DP      +   +P E ++ KSP +LL+                + G  A+  YA G+ P GA+LF+RF     ++  +   ++V + +  ++EM L  I    L + +  AL+ +      V+A  V WVLTVP   S+     +R +A+ AG +    D EGL  C EPIAACLA  +RL W+    YLV+DCGG TVDI    V  +    L QL +   GPWGS  +D  F+ +L+
Sbjct:   28 VVAIDIGKFGTACSWKSNWDPVPAVRNLDTQQPREKVVRKSPNSLLVHRDN--------VSVVSLGDTAEKSYACGSCPVGAKLFRRFGRQRMRVESEPTSESVVKCSRNRSEMELAKIMFYLLMHARDAALKNLPGAGKPVSAASVNWVLTVPASLSDRQWETVRNSAVMAGLVNDWHDREGLKFCPEPIAACLAFQDRLDWQAGKTYLVVDCGGVTVDIHVVGVCDTEKRELCQLLKGRSGPWGSETLDILFDEFLR 278          
BLAST of mRNA_E_fasciculatus_S2_contig7220.15400.1 vs.
Match: Heat (shock protein 70-putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC9_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 8.080e-36
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  415 VTAEHVTWVLTVPVCCSEPAKHFMREAAIKAGFIKGGDDDEGLVLCMEPIAACLALGNRLQWRMRDKYLVIDCGGGTVDISAFEVISSAPPSLQQLGEANGGPWGSTYVDTQFEAYL 765
            V    V+WVLTVP CC+ PA  FM +AAI+AG I G DD E L +C EP+AACLAL +RL W + D YLV+DCGGGTVDI AF++    PP L Q+G+     WGSTYVD QF  +L
Sbjct:   35 VKPNRVSWVLTVPACCTAPATKFMSDAAIRAGLINGEDDAEHLTICKEPVAACLALEDRLDWSVNDMYLVVDCGGGTVDICAFKLAQLGPPILDQVGDNISESWGSTYVDEQFRVFL 151          
BLAST of mRNA_E_fasciculatus_S2_contig7220.15400.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4X7_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.560e-34
Identity = 104/278 (37.41%), Postives = 147/278 (52.88%), Query Frame = 1
Query:    4 DFVVAIDLGTSCTAFSWKSIVDPAGPSVGVPDMKPNEDIIG---KSPTTLLIAGST---GGDKMFR-PTGAEAYGREAQLRYANGNIPHGAQLFKRFKMIY----------DDLLDAVTRSTSRKAEMMLMDIFVIALEYIKSVALRGMTL--THAVTAEHVTWVLTVPVCCSEPAKHFMREAAIKAGFIKGGDDDEGLVLCMEPIAACLALG----NRLQWRMRDKYLVIDCGGGTVDISAFEVISSAPPSLQQLGEANGGPWGSTYVDTQFEAYLK 768
            D + AIDLGTS +A+++ ++V      +GVP  + NE  +    K+ T +L+  S+   GG  M     GAE    +A  R  +G       LFK FKM              + DA   S   K  + L+ +  +ALEYIK V +  +    +H + A  + WVLTVP   S   K FMR AA++AG I+  +D E L LC+EP AACL +     N  +W    K +V+DCGGGTVDI+   V+   P  L++L E  GGPWGST  DT+F+ ++K
Sbjct:    4 DVIAAIDLGTSRSAYAY-TVVGRDEIILGVPG-RLNESKVAVERKTATAVLLRRSSENRGGWCMVTFGDGAEQEYLDA--RNGDGEAAGNLALFKYFKMELFKGGRNGTKRSSIDDAEGISEDEKTRLPLVYVVSLALEYIKDVIINRLNNADSHTLRASDIRWVLTVPAIWSSFGKAFMRSAALRAGLIQDENDMEHLRLCLEPEAACLTVEHHHHNIRKWETGMKVMVLDCGGGTVDITTHHVVRMDPLGLEELEEPTGGPWGSTTADTKFKLFIK 277          
BLAST of mRNA_E_fasciculatus_S2_contig7220.15400.1 vs.
Match: Heat (shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G266_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.710e-30
Identity = 97/276 (35.14%), Postives = 141/276 (51.09%), Query Frame = 1
Query:    4 DFVVAIDLGTSCTAFSWKSIVDPAGPSVGVPDMKPNEDIIG---KSPTTLLI--AGSTGGDKMFRPTGAEAYGREAQLRYANGNIPHGAQLFKRFKMIY----------DDLLDAVTRSTSRKAEMMLMDIFVIALEYIKSVALRGMTL--THAVTAEHVTWVLTVPVCCSEPAKHFMREAAIKAGFIKGGDDDEGLVLCMEPIAACLALG----NRLQWRMRDKYLVIDCGGGTVDISAFEVISSAPPSLQQLGEANGGPWGSTYVDTQFEAYLK 768
            D + AIDLGTS +A+++ ++       +GVP  + NE  +    K+ T +L+  A    G       G  A     + R   G       LFK FKM              + DA   S  +K  + L+ +  +ALEYIK V +  +    +H + A  + WVLTVP   S     FMR AA++AG I+  +D E L LC+EP AACL +     N  +W    K +V+DCGGGT+DI+   V+S+ P  L++L E  GGPWGST  D +F+ ++K
Sbjct:    4 DVIAAIDLGTSRSAYAY-TVTGRDDIILGVPG-RLNESKVSVERKTATAILLKRAPKKSGGWCMVTFGDGAEQEYLEARTKGGEAESDLALFKYFKMELFKGGRKGTKRSSVDDAEGISEDQKTRLPLIYVVSLALEYIKDVVINRLNKADSHTLKAFDIRWVLTVPAIWSSFGTTFMRTAALRAGLIQRENDMEHLRLCLEPEAACLTVEHHHRNVHKWENGMKVMVLDCGGGTIDITTHHVVSTNPLGLEELEEPAGGPWGSTTADAKFKLFIK 277          
BLAST of mRNA_E_fasciculatus_S2_contig7220.15400.1 vs.
Match: Heat (shock protein 70-putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB5_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.650e-30
Identity = 96/274 (35.04%), Postives = 142/274 (51.82%), Query Frame = 1
Query:    4 DFVVAIDLGTSCTAFSWKSIVDPAGPSVGVPDMKPNEDIIGKSPTTLLIAGSTGGDKMFRPTGAEAYGREAQLRYANGNIPHGAQ------LFKRFKM-IYDD------LLDAVTRSTSRKAEMMLMDIFVI--ALEYIKSVALRGMTLTHAVTAEHVTWVLTVPVCCSEPAKHFMREAAIKAGFIKGGDDDEGLVLCMEPIAACLALGNRLQ----WRMRDKYLVIDCGGGTVDISAFEVISSAPPSLQQLGEANGGPWGSTYVDTQFEAYLK 768
            D V AIDLGTS TA+++ ++V      +GVPD   ++  + +   T ++      D+         +G  A+  Y         +      LFK FKM +Y         +D    +       +L  IFV+  A+EYIK+  L  +++        + WV+TVP   S   K FMR A+ +AG I   +D +GL LC+EP AACLA+ +  Q    W   DK +V+DCGGGT+DI++  V SS P  L +L E  GG WGS+ VDT+F+A+L+
Sbjct:    5 DIVAAIDLGTSRTAYAY-TVVGREHIWLGVPDSPDDDRNVERKTLTAVLMQRCDEDEAEGGWRVAGFGDTAEEDYLTAKADEADEDRGSLVLFKFFKMELYQGGREQRARMDVDEPTAKAVGGEVLPMIFVVSKAIEYIKNQILDRVSMIAQEDDARLMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGVGSWHPGDKIMVLDCGGGTIDITSHLVESSDPLQLSELAEPCGGAWGSSIVDTRFKAFLQ 277          
BLAST of mRNA_E_fasciculatus_S2_contig7220.15400.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE4_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 2.820e-30
Identity = 91/265 (34.34%), Postives = 133/265 (50.19%), Query Frame = 1
Query:   10 VVAIDLGTSCTAFSWKSIVDPAGPSVGVPDMK-PNEDIIGKSPTTLLIAGSTGGDKMFRPTGAEAYGREAQLRYANGNIPHGAQLFKRF-KMIYDDL---LDAVTRSTSRKAEMMLMDIFVIALEYIKSVALRGMTLTHA--VTAEHVTWVLTVPVCCSEPAKHFMREAAIKAGFIKGGDDDEGLVLCMEPIAACLALGNRLQ-----WRMRDKYLVIDCGGGTVDISAFEVISSAPPSLQQLGEANGGPWGSTYVDTQFEAYLK 768
            VVAID+G   TA+SWK+   P    V   +++ P E  + KSP +LL+          R      +G  A+  +     P G QLF+RF + ++ +    LD   + +  ++ + LM+I V  L +++  AL  ++      +T + V WVLTVP    E  +  MR AA+ +  +  G DDE LV C E IAACLA  + L      W + D YLV+DCGG TVD+ A  V       L  + E   GPWG+   D QF+  L+
Sbjct:   26 VVAIDVGKFGTAYSWKADEHPIPRGVRNLEIEQPREGTVRKSPNSLLV---------HRENRQVLFGDFAEGCFTGHASPVGGQLFRRFGRQLWLESSWSLDTPVKCSRNRSVVELMEILVYLLNHVRDAALLNLSTAGVPPMTVDGVKWVLTVPASLPEQQQEAMRTAAVMSSLVDDGHDDEHLVFCPEAIAACLAFQDNLSQDSLPWNVGDIYLVVDCGGVTVDLHAVGVCDMEKRELSLMHEGTSGPWGAENADKQFDILLQ 281          
BLAST of mRNA_E_fasciculatus_S2_contig7220.15400.1 vs.
Match: heat (shock 70 kDa protein 12A-like isoform X1 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DAG3_CRAVI)

HSP 1 Score: 119 bits (298), Expect = 2.720e-25
Identity = 100/282 (35.46%), Postives = 146/282 (51.77%), Query Frame = 1
Query:   10 VVAIDLGTSCTAFSWKSI----VDPAGPSVGVPDMKPNEDIIGKSPTTLLIAGSTGGDKMFRPTGAEAYGREAQLRYAN--GNIPHGAQLF-KRFKMI-YDDLLDAVTRST-----SRKAEMMLMDIFVIALEYIKSVALRGMTLTH------AVTAEHVTWVLTVPVCCSEPAKHFMREAAIKAGFIKGGDDDEGLVLCMEPIAACLAL----------GNRLQ-WRMRDKYLVIDCGGGTVDISAFEVISSAPPSLQQLGEANGGPWGSTYVDTQFEAYL 765
            + AID GT+ + F++ S      DP   +V   D  P+  I  K+PTTLL+      D+ F     EA+G EA+ +YA    N  +G  ++ +RFKM+ Y+ L   +T+       + K E+  +++F  A+ Y      RG+ LT        V  E++ WVLTVP   S+PAK FM EAA+ AG  +       L L +EP AA +            GN L  + +  KYLV+D GGGTVDI+  EV      +L++L +A+GG WG T VD  F+ +L
Sbjct:   11 ICAIDFGTTFSGFAYSSKKEYDYDPLNIAVPNWDTPPSVQISYKTPTTLLL----NKDQNF-----EAFGYEAESKYAELVENEKNGEYIYIRRFKMLLYNTLSKRLTKEMMIKDITEKKEVKAIEVFKHAINYF-----RGLMLTTIDKKGLGVKEENIRWVLTVPAIWSDPAKQFMAEAAVMAGIPR-----TKLSLALEPEAASIFCNRIPLSKFEEGNGLGGFEVGKKYLVLDAGGGTVDITVHEVTQDK--TLKELEKASGGDWGGTCVDNYFKNFL 271          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7220.15400.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Heat4.340e-19768.35shock protein 70-putative n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.210e-12058.52protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.620e-5089.25protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Protein7.850e-3636.29kinase domain-containing protein n=2 Tax=Ectocarpu... [more]
Heat8.080e-3657.26shock protein 70-putative n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.560e-3437.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Heat1.710e-3035.14shock protein 70 n=1 Tax=Ectocarpus siliculosus Ta... [more]
Heat2.650e-3035.04shock protein 70-putative n=2 Tax=Ectocarpus TaxID... [more]
Protein2.820e-3034.34kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
heat2.720e-2535.46shock 70 kDa protein 12A-like isoform X1 n=2 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7220contigE_fasciculatus_S2_contig7220:2297..7466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score114.4
Seed ortholog evalue7.1e-23
Seed eggNOG ortholog55529.EKX54611
Preferred nameHSPA12A
Model size1365
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.ATP binding
EggNOG OGsCOG0443@1,KOG0101@2759
Cds size687
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7220.15400.1prot_E_fasciculatus_S2_contig7220.15400.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7220 2396..6668 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842385.4544153-UTR-E_fasciculatus_S2_contig7220:2296..23951696842385.4544153-UTR-E_fasciculatus_S2_contig7220:2296..2395Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7220 2297..2395 +
1696842385.5342624-UTR-E_fasciculatus_S2_contig7220:6668..71061696842385.5342624-UTR-E_fasciculatus_S2_contig7220:6668..7106Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7220 6669..7106 +
1696842385.543825-UTR-E_fasciculatus_S2_contig7220:7325..74661696842385.543825-UTR-E_fasciculatus_S2_contig7220:7325..7466Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7220 7326..7466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842385.4787896-CDS-E_fasciculatus_S2_contig7220:2395..25751696842385.4787896-CDS-E_fasciculatus_S2_contig7220:2395..2575Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7220 2396..2575 +
1696842385.4914489-CDS-E_fasciculatus_S2_contig7220:4133..42351696842385.4914489-CDS-E_fasciculatus_S2_contig7220:4133..4235Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7220 4134..4235 +
1696842385.50069-CDS-E_fasciculatus_S2_contig7220:4528..46841696842385.50069-CDS-E_fasciculatus_S2_contig7220:4528..4684Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7220 4529..4684 +
1696842385.5162501-CDS-E_fasciculatus_S2_contig7220:5857..59411696842385.5162501-CDS-E_fasciculatus_S2_contig7220:5857..5941Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7220 5858..5941 +
1696842385.52526-CDS-E_fasciculatus_S2_contig7220:6503..66681696842385.52526-CDS-E_fasciculatus_S2_contig7220:6503..6668Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7220 6504..6668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7220.15400.1

>prot_E_fasciculatus_S2_contig7220.15400.1 ID=prot_E_fasciculatus_S2_contig7220.15400.1|Name=mRNA_E_fasciculatus_S2_contig7220.15400.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=229bp
MKPNEDIIGKSPTTLLIAGSTGGDKMFRPTGAEAYGREAQLRYANGNIPH
GAQLFKRFKMIYDDLLDAVTRSTSRKAEMMLMDIFVIALEYIKSVALRGM
TLTHAVTAEHVTWVLTVPVCCSEPAKHFMREAAIKAGFIKGGDDDEGLVL
CMEPIAACLALGNRLQWRMRDKYLVIDCGGGTVDISAFEVISSAPPSLQQ
LGEANGGPWGSTYVDTQFEAYLKASWLG*
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mRNA from alignment at E_fasciculatus_S2_contig7220:2297..7466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7220.15400.1 ID=mRNA_E_fasciculatus_S2_contig7220.15400.1|Name=mRNA_E_fasciculatus_S2_contig7220.15400.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5170bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7220:2297..7466+ (Ectocarpus fasciculatus EfasUO2)
AAAGACTTCGTCGTCGCGATCGACCTTGGCACATCGTGTACCGCCTTCAG CTGGAAGTCCATCGTCGACCCGGCGGGGCCCTCGGTCGGAGTGCCCGACA TGAAGCCAAACGAGGACATCATCGGGAAGAGCCCGACCACCCTCCTCATC GCGGGCAGCACCGGGGGCGACAAGATGTTCAGGCCCACCGGCGCCGAGGC GTACGGTCGAGAAGCTCAGCTCCGGTACGCCAATGGCAACATCCCTCACG GGGCGCAACTGTTCAAGCGGTTCAAAATGGTGAGAGAGAGAGAGAGCGGC GAGCCGAAAATTTTCGTGCTTTTGTTCTGCTCTGCCTGTTTGTGTGTGTG TGCGACCTGACGAAATTTGTTGTGTTGGGTGCGTGACCTGCTGCTGCTGC GACAACCCCCGTTTTTTGCCCCCACGTGTCCGCCGGGCACCTCTAGGTCA AACGATGGTATATGTTGGTCTGTAGGTTACGGCAGTAGTCTAGGGTGACC TCGTACACCAAACTAGCGGCAAGTTTTTGTGGGTTCGATTCTCTCCCGGC GTGAATCTTAATCTTGTCGATTTTTTTGCGATTCTGCTTTTGTCGGGGGC GAAGAAAGGAGACCCACACACAGCGCCGAGATTTTTTTGTCAACTTTCTC GCGGGACAAATCGAAGTCGTTTGTAGAAGGTGTGGAGTTTGCCGGCAGGT GTCGAGTGTTGACTACTGTGGATATCTCTCGAGGAGTGAGCAATGCGATT TGCGCTTCGGTGGGCAAGCGATTACTGCTGTAGTTCGTGAAGATGCATAC ATGTTGTACGCCATAAAGTAGAGGGACAGCAATGACGAAGGCGCACAAAA CTCAAGATATTGTGACAGCTTTTTCGATTGTTCCCGGAAAAAAGGGGGGA AAAAGAGGGACGCAATTAATTTTATATACCATGGTACGGCGGTGGGGACT GGTGAATGAACGTCCCTGTGTCGCAATCGTGGTCCTCCTCCTGTGTTCGA CCCGCCCCGTGCTCATACATGCTGCACTGCTGTAGACCGCAGTAATTGTA GTCTCCTTCTGTGGGCCTTTTGCATACCACGAACATGTACTACGTATTAA CAACAAGTAGCCGCGCGGACTGCTGGAGGTGGCGACATCACACAAAAACG GGCACGACTTTTGGCGTCAGAAGTCGAAACATAGACTACACATGGCGATG GCGGAAGATGTAACGGCACTACAATACTGCTGCGAAATACTCTCAGGCGC AACAGCAGTAGTGCTGTTGGAATTGTGCCGGAACCGGCCCCTTTGAGGTT TTGATGTCCCAAGTTGTGCGGGTATACATGGTGGGAAACTGATCAGTATG GAGCGTGAATTTAAACCACAACCAAGTATCTACAACAGCAGTCATTGAAT TTACGTACGTCGTCCGATCTGTGGGATGCATCCATGGCAGTACAAAGCTG TTCGAGAGGCGCAGTTGTTGTAAAATCGTCGCTTTCGATACGCGGCCATC AGAATTTTCACGTCAGTTGTTTCTCCTCAGATACAGAGTAGTGTGGGATC AAACAGCAGTACGTGGCACCACTTGCATCCCCAACCAAGAGAGTGAATGC TACACCTTCTTCCCGTACTTGAAGGTGCTGCCCCTGAACAATCTCAGTGT CGGTAGGGCTTCAACCATCCCATACCTACTGTACTCAATGACGTTGGTGA TATGTGTCGTTCCGATGCGCTTAATGACCACCGAGCCTTCCCCCCCACCC ACTATAAACCTATCCCCTCTTTCGGCCTTTCCCCTCCAATACTGATACGT GTCTCTACAGCAACTACACAGCAAGCCCTCCCAGCAGATCTACGACGACC TGCTCGACGCCGTGACGAGAAGCACCAGCAGGAAGGCAGAGATGATGCTG ATGGACATCTTCGTCATCGCTTTGGAATACATCAAGAGTGTGAGATGCAT ACATTCTGCCGGAAAGACGATGCTTGTGCCGAGGTCGTGGTCAGTCTCTT TGTTATTGTCGCCTGCCCCCCCCCACCTCCCCTGTTAGTCGCTCTCCTCT TTGAGCACTGCCCACTTCGGCGCGCTCTGAGCATCCCGCGTTCTGGCTCC GCAGATGGGGGAGGCGCAGACATGCGCTCCTCCCTCCGAAAGTCCCCCTC GTTCTGCTTTTGGCAGGTCTGAAACTTGTCGTCAAATGCCCCCTTGACCC GCGCGTTGATGCCACCCACCCACTGCGGCCAGGTCGCCCTCAGGGGCATG ACACTGACCCACGCGGTCACCGCCGAACACGTGACGTGGGTGTTGACGGT GCCCGTCTGTTGCAGCGAACCGGCCAAGCACTTCATGAGGGAGGCCGCGA TCAAGGCCGGCTTCATCAAAGGCGGTGACGACGACGAGGTGATTGTTGTT ATAGCGCTTCGCTCCGCACGCCCGGCGCGGAACGCTCTTGTGCCGTCTCG GGTCACAGGCAGGCTGGTAGCGAAACATGCAGCCCTGTGTTGACGCTTGC TTACAAAAACAGGTGGATTTCGCCGGTATACCCCAAGCGAATGCCTGAGC CCCCTTTTCGAGGCTCAGCAGTACATACGCTGACTTTTTCGACGACGTGA CCATGGTTTCTGGACGTTTCTGCCATAAGGGATGGTCAATTACTTGTAAA GTTAGGGCACCCCAGCTGAAGTTGGTCCAACGCAGTGCTTTGTGTTGATG TGCGATGCCTGGTGCGAGACGCTTGGCACACACACACGCACGCACACACA CACACCCGGTCGTGTGCTCTTCGAAGCAGCTTGAACTTCGCGACGAACTT GCCTTGGAGGCGTGATGTGCTGCCTGGCTGTTCTCTGCGTCGCTCAATTT TACTGGCCGGCGGTTGCTCTTTGCAGGCTTTCTCCCTCAAGTTTAGTAGC TATTCGGGTTGAGGGTTGTGTTCCGGACCATACGCTAGGCACCAGGTCGA TCCTCACCTCTTAGGAGCCTCCGTTGACAAGGCATGGTCAACGAGCTCGG AATGGGGCGGGTATGTTGTTAACCCTGGGATGGTAGCTGCAGCAGGCCTG GGTTTGCTCTCTCCCCTAGGGCTCGAAGTGAGACTTTGGTGCGTTGCGAC GGACGACGGAAGGCAGGCACACACCTACAAGAAATGCTTCAAAGGCATTG CCCGACAAACCTGAGAGAGAAGTTGTCAGTTACCGCCAAACACGCAGTCC AAACTATTCAAGGGGTGGGTGTTCGCGCTGGAACGTTTCTTGTTCATGCC AAGAGTTCTGCCGCCGACGCGCCACTGTGAGGAGCCGCCGTGGGGCAATC CAGCGTGCGGTGTAAGCCGTAGCCCCAGCGATCGAAGCAGCGGTTGATCT CGCCGTCGTGGAGGTTCTCCGAATCGCCCGCCCCCACGTGCCGTTGAAGG AATCGGGGGGCCTGAGATGTGGTCCGGTTTACCCACACGCTTCGACGTGG TGTCTGGCATGTTGCACGTTGTTCCTTGATGCCGATGTGGCCTAATCTGA CACACGGCGATTCGCTCCCCGTCCTGTAACAACGTTTTTCCTGTCGCCTC CCCCCCCCAAGGGCCTCGTTCTGTGCATGGAGCCAATCGCCGCCTGCCTG GCCCTTGGAAACAGGCTGCAATGGAGAATGAGGGACAAGTACCTGGTGAG TTAGTTCTACGTGGTAGTGTTTGTTCAGGTGCAGATGGAGCATTTCACGC GAAGAACCAAGCACTGCCTGCCGTGTAATCTGTCTTCTACGGCGCACGAC AGTTTGGTTGTGGGTTATTTTGACTTGATCCGATCCAGTCTTGCCGACTG CGTAGATCTGGAATCGATACCAGACCGGCGCCCCGTCCCTCTACTATTAA TAGCCCCGTTCTTTCCCCTGAGAGGGGAGTGTTTTGCCTATCGCGGGGTT ATGTTGACATACCACCTGCATACTCGACCGAAGGGACCCGAGGCCAAAGG AAGCGCATTGTCCGCCATTCAACCGTCGAGCCCGCGGACAAACCAAAACC AACCCGTGTATTCTTCCAGGCAAGGTGACACCACCGCAAGAAAAGAAATG GAAAGGAGAGTGACCCGCCTCCTGGACAATTTGTAAACTGCTGCTGGAGC CACCGGTCCAGCTCGATCGGTTACGAGCCTTTGCACGCGCGCAAGTAACC CGCCACGCACTTGATACTTGTTGCGGCGACGACGACCACCCGCACTGTTG TCACCAGGTGATCGACTGCGGCGGCGGCACGGTGGACATTTCCGCGTTCG AGGTGATCAGCAGCGCACCGCCAAGCCTCCAGCAGCTCGGAGAGGCGAAC GGCGGGCCGTGGGGGTCCACGTACGTGGACACGCAGTTCGAGGCTTACCT GAAGGCAAGTTGGCTTGGCTAATGTTGTGTTCCCAAGCCTTCAAAATATA CCTAACAAACACTAAACAAACCCGACCTATGCTTTACATGCAGCATATCA TTTTGAGTTCTGGGGACTGGCCCCTTGCTCTTTGTGCGACTGCAAAGTAC AACAGCGTTTCCTGGGCGATCGAAAAAACCATGCTTTGTAGCGGGTGGTA CGCAGAGCACAAAAAAAAAGCGAGAGCCTAGCTCCTGCTCGCATCCCTCG GTTCGGTTGATCGAGTGTCAAGCCCGCAACAACATCTATGTAGCTGCCTT GAACCCTGCTGTTGCCTCACAGCGCGCACTTCCCACCAACTCGCCGCCAC CGCGTGTGTCCCCCGAATATTAGGATTACGTGCTGTCCGTTGCTCAAGAA GCCGGGGGTAGGAGCCTGGAAAGCTTCTTCGCCAGTTCGGCCTCGTACCG GATTGCACAGGTGCGATGAAGGTGCTCTTGAGTAGCAACGAGTATGGTTT CTTGCAATTTTCCGGGTTCGTTTTTGGACAGGGACAGGCATTGGTTCAAG CCCTATATCATACCCCCCCTCCCCCGAGGTCAGTGATCTACATAGCGATA CGGCATGCACGGCCACGAGTGCGCTCCCCCTTTTTTGTTGCTGCCGCTGT CCATCCACACTGGAAACAACTGACGGCAGGCTTGGGAAAGAGCCAAGATC GGCTTGCGAAGCGTTGACCACGACTGCCGGATCGACCTGAGCGAGCTGAG CCGTGAGCCGTTGGAGGTGACGGTGGAAGAAATGGACGAAGGCCGGAGAG CGAAGAACAGAGGCGGCACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7220:2297..7466+

>mRNA_E_fasciculatus_S2_contig7220.15400.1 ID=mRNA_E_fasciculatus_S2_contig7220.15400.1|Name=mRNA_E_fasciculatus_S2_contig7220.15400.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=687bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7220:2297..7466+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGCCAAACGAGGACATCATCGGGAAGAGCCCGACCACCCTCCTCAT
CGCGGGCAGCACCGGGGGCGACAAGATGTTCAGGCCCACCGGCGCCGAGG
CGTACGGTCGAGAAGCTCAGCTCCGGTACGCCAATGGCAACATCCCTCAC
GGGGCGCAACTGTTCAAGCGGTTCAAAATGATCTACGACGACCTGCTCGA
CGCCGTGACGAGAAGCACCAGCAGGAAGGCAGAGATGATGCTGATGGACA
TCTTCGTCATCGCTTTGGAATACATCAAGAGTGTCGCCCTCAGGGGCATG
ACACTGACCCACGCGGTCACCGCCGAACACGTGACGTGGGTGTTGACGGT
GCCCGTCTGTTGCAGCGAACCGGCCAAGCACTTCATGAGGGAGGCCGCGA
TCAAGGCCGGCTTCATCAAAGGCGGTGACGACGACGAGGGCCTCGTTCTG
TGCATGGAGCCAATCGCCGCCTGCCTGGCCCTTGGAAACAGGCTGCAATG
GAGAATGAGGGACAAGTACCTGGTGATCGACTGCGGCGGCGGCACGGTGG
ACATTTCCGCGTTCGAGGTGATCAGCAGCGCACCGCCAAGCCTCCAGCAG
CTCGGAGAGGCGAACGGCGGGCCGTGGGGGTCCACGTACGTGGACACGCA
GTTCGAGGCTTACCTGAAGGCAAGTTGGCTTGGCTAA
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