mRNA_E_fasciculatus_S2_contig6995.15132.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6995.15132.1
Unique NamemRNA_E_fasciculatus_S2_contig6995.15132.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6995.15132.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y8_9PHAE)

HSP 1 Score: 634 bits (1635), Expect = 2.590e-219
Identity = 344/407 (84.52%), Postives = 358/407 (87.96%), Query Frame = 1
Query:    1 AKLALHVWALTAHAREVMPAQDGFVWTHGTYQSHTLTTKHGEVPPLEGWARMWTDPLDTEVRLVLPEGLELSSLFYFWLSSTLSRYLGAEVTMEEREIFRENVFGLSLSATGLSEVSGKPSSWEAYEAADKKRPVFHTLPGARGTAFFGWKWGAFSAFMDARARVLESDSWEGGESLVHVPGGEVALSWAGTLERFLAEFCHGRGLGILHPNLNGDVSFARQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLSQSQTAHTPTPTLRGTEDGGG-REPEELVLTYRDAHNVVVKYPSVSSVSAYDLLSRRHRDLTHLRLQAYRFFQRLRASAERNKDLEDLWKRPGVPKPNYGLAKFLIYQPQFGMGNQLRALDAALAVARVLGRVLVVPDYMADNGEGESRR 1218
            A+LALHVWALTAHAREVMPAQDGFVWTHGTYQ HTLTTKHGEVPPLEGWARMWTDP+DTEVRLVLPEGLELS+LFYFWL+STL+RYLGA VTMEEREIFRENVFGLSLSATGLSEVSG PSSW AYEAADKKRPVFHTLPGARGTAFFGWK                      GE+LVHVPGGEVALSWAG+LERFLAEFCHGRGLGILHPNLNGDVSFARQ P XXXXXXXXXXXXXXXXXXXX           L  SQTAHTPTPTLRGT+DGGG REPE LVLTYRDA+N++VKYPSVSSV AYDLLSRRHRD+THLRLQAYRFFQRLR S ERNKDLEDLWKRPG+PKPNY LAKFLIYQPQFGMGNQLRALDAALAVARVLGRVLVVPDY+ADNGEG S R
Sbjct:  139 AELALHVWALTAHAREVMPAQDGFVWTHGTYQFHTLTTKHGEVPPLEGWARMWTDPIDTEVRLVLPEGLELSNLFYFWLASTLARYLGAGVTMEEREIFRENVFGLSLSATGLSEVSGVPSSWGAYEAADKKRPVFHTLPGARGTAFFGWK---------------------EGEALVHVPGGEVALSWAGSLERFLAEFCHGRGLGILHPNLNGDVSFARQLPPXXXXXXXXXXXXXXXXXXXXEA---------LPLSQTAHTPTPTLRGTDDGGGGREPEGLVLTYRDANNLIVKYPSVSSVPAYDLLSRRHRDVTHLRLQAYRFFQRLRTSVERNKDLEDLWKRPGMPKPNYALAKFLIYQPQFGMGNQLRALDAALAVARVLGRVLVVPDYIADNGEGRSVR 515          
BLAST of mRNA_E_fasciculatus_S2_contig6995.15132.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE24_ECTSI)

HSP 1 Score: 473 bits (1218), Expect = 1.140e-156
Identity = 267/333 (80.18%), Postives = 275/333 (82.58%), Query Frame = 1
Query:    1 AKLALHVWALTAHAREVMPAQDGFVWTHGTYQSHTLTTKHGEVPPLEGWARMWTDPLDTEVRLVLPEGLELSSLFYFWLSSTLSRYLGAEVTMEEREIFRENVFGLSLSATGLSEVSGKPSSWEAYEAADKKRPVFHTLPGARGTAFFGWK------------------------------------WGAFSAFMDARARVLESDSWEGGESLVHVPGGEVALSWAGTLERFLAEFCHGRGLGILHPNLNGDVSFARQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLSQSQTAHTPTPTLRGTED--GGGREPEELVLTYRDAHNVV 885
            A+LALHVWALTAHAREVMPAQDGFVWTHGTYQ HTLTTKHGEVPPLEGWARMWTDP+DTEVRLVLPEGLELSSLFYFWLSSTL+RYLGAEVTMEEREIFR+NVFGLSLSATGLSEVSGKPSSW AYEAADKKRPVFHTLPGARGTAFFGWK                                    WG FSAFMDARARVLESDSWEGGE+L HVPGGEVALSWAG+LERFLAEFCHGRGLGILHPNLNGDVSFARQ P XXXXXXXXXXXXXXXXXXXXXX            SQTAHTPTPTLRGT D  GGGREPE LVLTYRDA+N+V
Sbjct:   91 AELALHVWALTAHAREVMPAQDGFVWTHGTYQFHTLTTKHGEVPPLEGWARMWTDPIDTEVRLVLPEGLELSSLFYFWLSSTLARYLGAEVTMEEREIFRDNVFGLSLSATGLSEVSGKPSSWGAYEAADKKRPVFHTLPGARGTAFFGWKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGDFSAFMDARARVLESDSWEGGEALAHVPGGEVALSWAGSLERFLAEFCHGRGLGILHPNLNGDVSFARQLPPXXXXXXXXXXXXXXXXXXXXXXTPLL--------SQTAHTPTPTLRGTADDGGGGREPEGLVLTYRDANNLV 415          
BLAST of mRNA_E_fasciculatus_S2_contig6995.15132.1 vs.
Match: Uncharacterized (protein n=2 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A4P9YSI8_ROZAC)

HSP 1 Score: 70.5 bits (171), Expect = 2.390e-9
Identity = 84/397 (21.16%), Postives = 149/397 (37.53%), Query Frame = 1
Query:   46 EVMPAQDGFVWTHGTYQSHTLTTKHGEVPPLEGWARMWTDPLDTEVRLVLPEGLELSSLFYFWLSSTLSRYLGAEVTMEEREIFREN------VFGLSLSATGLSEVSGKPSSWEAYEAADKKRPVFHTLPGARGTAFFGWKWGAFSAFMDARARVLESDSWEGGESLVHVPGGEVALSWAGTLERFLAEFCHGRGLGILHPNLNGDVSFA--RQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLSQSQTAHTPTPTLRGTEDGGGREPEELVLTYRDAHNVVVKYPSV-----SSVSAYDLLSRRHRDLTHLRLQAYRFFQRLRASAERNKDLEDLWKRPGVPKPNYGLAKFLIYQPQFGMGNQLRALDAALAVARVLGRVLVVPDYMADN 1197
            EV+   D F W HG    +  T + G    +      W+   D E  + L + +E+S  ++ ++   ++RY           +FREN      + G+SL     +E+   P  W   +           +P + G  +F   W  F  + D R   +    +    S +  P    + +W  + +R L +  + RG  +++PN    +SF+   + P                               L   + + H     L+  +           L   D ++   K PSV     + + A + L   +R+   L    ++ F  +      N  + DL+      +P     K++I+QPQ G  NQLRA + A+A A +L R LV+P   + N
Sbjct:  128 EVIALVDSFKWPHGDTIRNIRTDRLGLEKMIMS---AWSPASDDEYAIFLEDDIEVSKYYFGFILMNINRY-----------VFRENADVLSKMMGISLYTPRWNEIVHPPLKWIPSDIVQNSTLFMFQIPCSWGAVYFPKVWREFKEYYDWRTSEVAVRKFG---SRIIAPNAH-SNTWRRSWKRHLIDLSYARGWFMIYPNFPDQLSFSTNHREPGKLSKAIQKGEHTGSKGAAGKTSSFTLTKKKLWVYTVSLHEDDSFLKSRKFWNDLNKPIKDLDVFDIYHR--KVPSVVHLFETGLGALEQLYHTNRNTKEL----FKRFYGINTVDGNNHCVLDLFGSLEREEP-VSDEKYIIFQPQLGFNNQLRAYEDAIAYAHILKRTLVLPPVQSTN 499          
BLAST of mRNA_E_fasciculatus_S2_contig6995.15132.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HNA9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.760e-8
Identity = 83/394 (21.07%), Postives = 148/394 (37.56%), Query Frame = 1
Query:   70 FVWTHGTYQSHTLTTKHGEVPPLEGWARMWTDPLDT--EVRLVLPEGLELSSLFYFWLSSTLSRYLGAEVTMEEREIFRENVFGLSLSATGLSEVSGKPSSWEAYEAADKKRPVF-HTLPGARGTAFFGWKWGAFSAFMDARARVLESDSWEGGESLVHVPGGEVALSWAGTLERFLAEFCHGRGLGILHPNLNGDVSFARQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLSQSQTAHTPTPTLRGTEDGGGREPE-----ELVLTYRDAHNVVVKYPSVSSVSAYDLLSRRHRDLTHLRLQAYRFFQRLR--ASAERNKDLEDLWKR-------PGVPKPNYGLAKFLIYQPQFGMGNQLRALDAALAVARVLGRVLVVPDYMADNG 1200
            F W+HG      +  +   V  ++     W  P D   E  ++L + +E+S  FY++  S L     A+           ++ GLS      +E+   P+       +D   P+F   LP + G  +F W W  F  +   R      +   GG  +  +P G  + SW  + +R+  E+   RGL +L+PN   + S A                                     +  +      P L    D   +  +     + ++ +R   +  +K+     +   D+++  HR  +   ++ Y         +S  R + L+ +           G   P     K+ +Y PQ G+ NQ+  L  A+ +A+ LGR LVVP  +AD+G
Sbjct:  223 FRWSHGP--PPRINLRKERVGLMDNIVESWDPPEDEACEFAILLEDDIEVSPHFYYYAKSLLVNSKYADDA---------DLVGLSFYTPKWNEIK-YPNVGFKVPTSD---PLFLMQLPCSWGAVYFPWHWREFRKYFAERRNF---EKGVGGIDVPPLPEGARSNSWERSWKRYYIEYMFYRGLLMLYPNFQKEKSLAT------------------------------------THRELGEHTGPNLNKGRDKLTKAKDWERYIQSLVAFRSELDKQLKFSDPPRLKEMDVVNLYHRPASREEIKRYATITSFGNISSNTRREYLDKVHGEGFCALDVSGQRVPQSSGKKYFLYDPQNGLSNQIMQLQGAVVMAQQLGRTLVVPPVVADDG 562          
BLAST of mRNA_E_fasciculatus_S2_contig6995.15132.1 vs.
Match: Uncharacterized (protein n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TQV8_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 7.470e-8
Identity = 82/369 (22.22%), Postives = 130/369 (35.23%), Query Frame = 1
Query:  157 WTDPLDTEVRLVLPEGLELSSLFYFWLSSTLSRYLGAEVTMEEREIFRENVFGLSLSATGLSEVSGKPSSW-EAYEAADKKRPVFHTLPGARGTAFFGWKWGAFSAFMDARARVLESDSWEGGESLVHVPGGEVALSWAGTLERFLAEFCHGRGLGILHPNLNGDVSFARQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLSQSQTAHTPTPTLRGTEDGGGREPEELV-------LTY--------RDAHNVVVKYPSVSSVSAYDLLSRRHRDLTHLRLQAYRFFQRLRASAERNKDLEDLWKRPG-----VPKPNYG---LAKFLIYQPQFGMGNQLRALDAALAVARVLGRVLVVPDYMA 1191
            W    D E      + +E++  F+ +    L +Y+     +  + +  E  FG+SL     +E++ KP  W  + E   ++      LP + G     W W  F  F   R     SD  +       +P   V   W  + ++FL EF + RGL +L+P L   +SF+                                           H   P     E   GR  E LV       L Y        +DA  V      +  +S   ++S  H  + ++          +    +   D       P      +  P +G     +FLIY+PQ  +G+QL AL  A A A +L R LV+P  +A
Sbjct:  125 WEARSDDEFAFFFEDDIEVAPRFFEYSVIALEKYILPGGQLANQTVLTERFFGISLVTPRYNEIAMKPVDWIPSQEIGMEESQFLFQLPSSWGALLIPWFWRQFLQFYRWRRDKDGSDLKQS------IPDSAVRY-WRRSWKKFLIEFMYMRGLYMLYPALERQISFS------------------------------------------THHREPG----EHTKGRPEEHLVDELGTIKLNYFTVPLALEKDAQQVDRMIAEMKPLSQLPIVSFHHERVQNVHALTQLGLFTVEVMEKHGWDHSKYRVNPTCVLDTITFPVHGQEETERFLIYEPQLSLGHQLNALQNAAAYAAILNRTLVLPPLVA 440          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6995.15132.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized2.590e-21984.52protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.140e-15680.18protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.390e-921.16protein n=2 Tax=Rozella allomycis (strain CSF55) T... [more]
Hypothetical2.760e-821.07protein (Fragment) n=1 Tax=Odontella aurita TaxID=... [more]
Uncharacterized7.470e-822.22protein n=1 Tax=Paramicrosporidium saccamoebae Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6995contigE_fasciculatus_S2_contig6995:366..7841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score61.6
Seed ortholog evalue9.7e-07
Seed eggNOG ortholog4641.GSMUA_Achr2P02840_001
Model size1218
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG OGs2CMCB@1,2QPYF@2759,37MZ0@33090,3GCYF@35493,3KS5K@4447
Cds size1218
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6995.15132.1prot_E_fasciculatus_S2_contig6995.15132.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6995 366..7841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842356.6829817-CDS-E_fasciculatus_S2_contig6995:365..5001696842356.6829817-CDS-E_fasciculatus_S2_contig6995:365..500Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6995 366..500 -
1696842356.6939397-CDS-E_fasciculatus_S2_contig6995:1945..21431696842356.6939397-CDS-E_fasciculatus_S2_contig6995:1945..2143Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6995 1946..2143 -
1696842356.723889-CDS-E_fasciculatus_S2_contig6995:2800..31691696842356.723889-CDS-E_fasciculatus_S2_contig6995:2800..3169Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6995 2801..3169 -
1696842356.7394412-CDS-E_fasciculatus_S2_contig6995:4165..42281696842356.7394412-CDS-E_fasciculatus_S2_contig6995:4165..4228Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6995 4166..4228 -
1696842356.7525322-CDS-E_fasciculatus_S2_contig6995:5258..53661696842356.7525322-CDS-E_fasciculatus_S2_contig6995:5258..5366Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6995 5259..5366 -
1696842356.7627916-CDS-E_fasciculatus_S2_contig6995:6438..66031696842356.7627916-CDS-E_fasciculatus_S2_contig6995:6438..6603Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6995 6439..6603 -
1696842356.774025-CDS-E_fasciculatus_S2_contig6995:7661..78411696842356.774025-CDS-E_fasciculatus_S2_contig6995:7661..7841Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6995 7662..7841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6995.15132.1

>prot_E_fasciculatus_S2_contig6995.15132.1 ID=prot_E_fasciculatus_S2_contig6995.15132.1|Name=mRNA_E_fasciculatus_S2_contig6995.15132.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=406bp
AKLALHVWALTAHAREVMPAQDGFVWTHGTYQSHTLTTKHGEVPPLEGWA
RMWTDPLDTEVRLVLPEGLELSSLFYFWLSSTLSRYLGAEVTMEEREIFR
ENVFGLSLSATGLSEVSGKPSSWEAYEAADKKRPVFHTLPGARGTAFFGW
KWGAFSAFMDARARVLESDSWEGGESLVHVPGGEVALSWAGTLERFLAEF
CHGRGLGILHPNLNGDVSFARQAPPSSSSSSSSSSSSSSGSSAGGKGWLE
EEETLLLSQSQTAHTPTPTLRGTEDGGGREPEELVLTYRDAHNVVVKYPS
VSSVSAYDLLSRRHRDLTHLRLQAYRFFQRLRASAERNKDLEDLWKRPGV
PKPNYGLAKFLIYQPQFGMGNQLRALDAALAVARVLGRVLVVPDYMADNG
EGESRR
back to top

mRNA from alignment at E_fasciculatus_S2_contig6995:366..7841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6995.15132.1 ID=mRNA_E_fasciculatus_S2_contig6995.15132.1|Name=mRNA_E_fasciculatus_S2_contig6995.15132.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=7476bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6995:366..7841- (Ectocarpus fasciculatus EfasUO2)
GCCAAGCTCGCGCTTCACGTCTGGGCGCTCACGGCGCACGCGCGGGAGGT GATGCCGGCCCAGGATGGCTTCGTGTGGACGCACGGCACGTACCAGTCCC ACACGCTCACGACGAAGCACGGCGAGGTGCCTCCGCTGGAAGGGTGGGCG AGAATGTGGACGGACCCGTTAGACACGGAGGTGAGGAACATGGCGGTCGT GCTGACACGGGGGGGGGGGGGGGGGGGGGCTACTCTTGCGTGTTGGGAGA TGGGAAGGGCGTGGGGGAGGGAAAGAGGGGAGGGCTTGGGGGTGCCCCCG GGGGGAGGGGGGGGGGGAAGAGGGAAGGCGCCGTGTAGCCCGGGGGGGGG GGAATGGGGGGGGGGGGTGGACGGGGGGGGGGGGGGGGGGGGGGGGGCTA CTCTTGCGTGTTGCGTGCCTTAGCGGTTAGGCCATTGACCGTGCGTCCTC GAGAGGACGGAGCATTGTTCCCACAGGACCGATCACCAATGACCAATCAT TCCTTCCTGCTTTGCCAAAGTAACACCGGGCGGGGGGAGGCGGGGGGTGT AGCCTTGCATGCCGTAGTCGTCAGTTGGACCGTTTGCCTCACATCCCTAG AGAACCTGTGCGGAGCACGCCGGGTTTTCGCCGGACCAGGCTAAAAAAGC ACATCATCAAGCGCGAAACGCCGTAGGGGATGGTGTACCAACTCACGCAT GCCGTAGTCGTTAGGTCATTGGCGTCGCGGCCGGGACGGCGCGATGTAGG GAGGGGTCTTTGGTGCTTGTCTTTACCGTGCAACAACGCTGCTCGCGGGG GGGGCACTTCTGCTGTACTATATTTTGTTGTTCTTCCTCTGGTTTTGGTT TGCGCGCTACAGTACAGCGAGCAGTCGCCGTAGGTCCAAACTGTACGAAA AAGAATTTTGCTTGGCACGTCTTTACGGCTCTCGACATGGCTCTCTCTCG GTTCTCTGTGCCGGAAACACGTGGTCTTGTCCTTGTCCTTGCCTCGCCCG TGCAATCGCGATGTGTGTTGCTTGCTGCCTGTCTGTCGTGAGGAACGGCG TAGAAGGAATCGCCTGCCTGGCGCGAACGACAAGACCAAAAAAGAAAAAA ACGCCACCCTCCCCACAAAAAAAAAGAAAACGCACGAAACCCACACGGCT CGTTAACCCCGCCTTCATACTCACCCATGCATCACCCACCCACCCTTCCG GCCACCGCCGCCGCCGCCGTGCCGCCTTTGTCTTGTAGGTTCGGTTGGTG CTGCCGGAGGGGCTGGAGCTGTCGAGCCTGTTCTACTTTTGGCTATCGAG CACGCTGTCGAGGTACCTGGGTGCGGAGGTGACGATGGAGGAGCGGGAGA TCTTCCGAGAGAACGTGTTCGGGTTGTCCCTCTCCGCGACCGGGTTGTCG GAGGTGAGGGAAGACAGAGAAGGAAAGGGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAAGTGGGAGCGAAAGGAAGACAGAGGAAG AGAGAGAGACAGGGTGAGAGAGAGACCGAGAGAGAGAGACTCCTTCGACC CTTCGATCAAATGAGAAGATTTGTTGCTGGAGAGGAAACTAAATTTGCTG TTATTTTGTTTGTAGTAGTGTGCGCAGGTTTAGGTCCCCGAACATGATGT TTCCATATGAGACCTTCCGTGGGGACGGGGGGGATGCTGACCGCTGCTGC TGCTGCTGCTGCTGCTGCTGTTGTTGTGTGGTGCCTTTGGTGTTGTTGTT GTTGTTGTTGTTGTTGTTGTTGTTTTTTCTGTCAGGACGATGCGTGCGAA GCACTGCAGTAAGTGATAGCTTAAAGCCTACGTGTTGTCATTTACATCCC CCTCAGGAAGACCAGACATGTATCTACTTGTACCAGGGCTGTGTGTGTGG GTTCCTTGGATCGGCACGACGAGAGCGCAGATCAACAAGCAGACGAGATT GAGGGTAGTGTTTGTCCCCGTTGCCTCAGGCAAAAAAAAAACTCCCCAAC TCGAAACAAGAAGGCCGCAGAAATGGTGCCATGGTGCATGCAACCCGTGC GTTCGTTCGCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG CTGCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGTTGTTGTTGCGGCCTCG GCTGCCTGCACCACCTGAAGCCGGTTTGCATGATTTTTTGGTTCGATGTT TTGTGGTGGTCGTGGTGGTGCCACACACGCACACATTTTTTCTGTGTTTC AGCTGCATTTAGTCTTGCATTTTTTTCATTGGTCAGCCGGTTACCGCGGT CGATGCTAACAAAAAAAAAACACACACACACACACACACAATATTGTACA CACGCTCAATTTTTTTCTGTTTTCGACCGGACCGAAACTGGGTCATTTTC TTCGGTCAGCCGGTTAGGGTGGTATTGCTATTAAATACTAATTCAACACA ACCCCAAAACAAAACACCCGCACAGGTTTCGGGCAAGCCCTCGTCGTGGG AAGCGTACGAGGCCGCGGACAAGAAACGGCCTGTGTTCCACACTCTCCCC GGGGCCAGAGGGACCGCCTTCTTTGGCTGGAAGGTAAGGGGGGGGGTAGG GGGGGCGTGGTACACGAGTTGAGGCCCAGGTGCAAAGGGGGGGGGGGGGG GGGTGGTTGGGGGCCCGGGGGGGGGGGTTAGGGGGCGGAGCAGAAAATTT AAAGTGGAAGAGCAACCGTATAAACACAAACCNNNNNNNNNNTGTTTTTC TACCTGGTGGGTGTGGGTTGGGGGTTGGGGGGGGGGGGGGGGGGGGGGGT GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGT TAGGCGTCCGAGTGCTGGTGTTAAGGTGCTGAGCAGATATCTTGGCGGGT TTTAAGGCGAAGACGATGGCGACGACGACAAAAATGAAAAGGTGGCGGGC TGGTGTTCGTACTATACCCCCCCACCTGGAACCTGAGTGCCCCGGTCGTC TGTCCCGCCGCCGCCGCCACCGCCGGATGAAGTTGTGGTGGGGCGTGGGA GGCTTGGCTTGTTTGCCGCAGCTCGTGTGCACACGCATATCCCGCCACAA GAGTGGGTGTTTTCGTCGGCTAGCCGGTTAGCGCGGTCGATGCTAGTTAA GAAAACACACGCAGAGAGAGAGGGGGGGGGGGGGTTACACGTGTAGAGGT GTGATTTTTTTTGTTGGTTTGGCTTGGAGTGTGCCTCCCATGCCCTGCCA TCGACTTGTGGTTGCGTTCTATCTTGATCCGAGAGAGGAAGCTAGGAGGA GGAGAGAAGGAGGCACGGAAAAGAAACAGGAGAGATTTCGTAATGCACAC CCAACAACAATGCCCGCAACGACGACTTCGACGAAGGCGACTAGTGATGG GACAATCCTCGGCCCTGCAAGGCACGATCGTTGTAGCAGCAAACTTGGCC GCATAACGTCATCAGGCCACCATGAACTCTTCCACCTCTCCGCGCGCTTG TTCGTGACCATGACGTCTTCCCTTATTTCCCTCTGTGCTGTTCGCGGTAA AAAAACACCGGGATCGCGATGGCGCTGCTGGTCGGTGTTGCTTTTTTTCG TTTTGGCGCAAAGTGGGGAGCCTTCTCCGCATTCATGGACGCCCGAGCCA GAGTGCTGGAGTCTGATTCGTGGGAGGTGAGAAAAAAAAAAAGAAGACAC CCGCAGGGCCACTTGTCGGTGTCCATCCTCTTCGTAGCTGTATGTTTGCA AGAGGAGCGGAAGCTACGTACGTACGCACAAATGCGTGAGGCAGGCAAGG AGTGCGCTTGATCATCGGAGGCTTTGTCAGGATTCAGAGTCCGGCCTCTG CCGGCCATCCACGGTGATGGTGCTGTCTGTGTTTCGTGTTGTCGTCCTGC GATAGATTGCCATCGCAAACAGACGTGACGAAGCAGCAGCAAACAAATCG CGGCCAAATTTTACGGCGACTGATTCACACGCGTCATTGTTTGTGCCCCC TTTTTTCTCTTTGCCGTGTCCAAGCGGAGTACAACCACGGCTTGGGGTCT TAACGTACACGCGAACGAAATATTGCCAGCGTACGTAAGCCGTCGATACG AAGTTTGTCTGCGCGGAAGTCGAGGCTGTTACGAGGGAAATCGTCTCTCT CCGGGCGGTTGTAATCTAACACACGACAATCCGCCAAACTGTTATCCGCA TGCAAATAGAATGCCTTGAGAGCTGAAAATGCTCCTCTGGGGCGGTGGCG GGAGTCGGCTTCGGCGTTTCGGCCTTGGTCCTAGCCGTCAGCATAGCCTG GGTTTTTCTGCCGCCAAACCTCCCCCTGCGTCTGTTCGGCATACGAATGA ACCCCGTGATCGTCGAATACCGCGTTCCGGCGCTCACCATCCAACCCCCA GTGTCAAAGAAAAAAGAAGAAAGGCGGCGAAGGAGGAGTCCTCATCGTTT CGCTCGACCCATGGCTTTCCATCTCAGAAGCCCATGCATGCATGACTTCA CCCACACACCCACACCCAACAACGACGAAGGCAAGCCACTACGTGAGCAT GCCCCCCCCCCGCCCAAAACCACCAACACCCGCTTACCCTCACACTCGGC CTTTCACTGCTACCTCCTCCATCGCTGCTGCTACTGCTACTGCCACGCTA CTGCTGCTGCTGCTATCGACAGGGAGGCGAGTCGCTGGTACACGTCCCGG GGGGTGAGGTGGCGCTTTCTTGGGCCGGGACCCTCGAGCGGTTCCTGGCA GAGTTTTGCCACGGCAGGGGCCTCGGCATCCTCCACCCGAACCTCAACGG GGACGTGAGCTTCGCCCGGCAGGCGCCGCCATCCTCCTCCTCCTCCTCCT CCTCCTCCTCCTCCTCTTCCTCCGGTAGCAGCGCGGGGGGAAAAGGGTGG CTGGAGGAGGAGGAAACTCTGCTGCTGTCGCAGTCGCAGACGGCACACAC GCCGACGCCGACTCTGAGGGGGACGGAGGACGGGGGGGGGCGGGAGCCGG AGGAGCTCGTATTGACGTACCGGGACGCTCATAACGTGGTTGTGAGTCGC GTGTTGCGGTTACTTTTTTTTTCGGTCTGATGTATCGAAAGCGTTGCGCG TGCGCTGCGTCCGGAGCAAGCGTTGGCGCGCGCGGCTCGCCGCTGTAGCG TACGATTGTCATTCTGTGCAAAAGGGGGGTTAAGCGTGCTTGTTTGTTGT GTGTAGCGCTCCGCGCGGGCGTGCGTAAGTAAGGGCAGTGAATGGCCTGG ATTCTTCAGGCCGTCATGGCCCCGACACCCGTAGCTGGGGGAGTTTCGCA GCACGCCAGTCAAAGTCTCGACTGCACGTTCTCGATATTGTAGGAGACGC CGGCATTTGAGGTGCGTTTCGTTCGGTGTCCTGTGGATAAATGCTCTCTC CGGTTTGACGTGAGCCTTCTCCCTATGTCCTTCAATGGCCTCTCGACCGC TCTCTTGCCCTTCACGAACCTCTCACTCTTTTTTTTGTCTTCAATCTGAG GCCGTGTTTAGTGTCTTGTTGTCGACCTAAATGGTTATTTTCATAACAAT GCTTTCTGCGACGTGACGTGATATTTCCCCTCCCTCATCTCTTATCCCTT CACCAACTTCACCAACCTCTCATTTCTCTTTTTTTTCAAACTAAGGCCGC TTTCTCGTTTTGTCTTGTCGACCCTTATATAATTTGTTTTTTGGTCAGGT AAAATACCCATCTGTGTCCTCCGTGTCAGCGTACGACCTCCTGTCCCGGA GACATCGGGACCTGACGCACCTGCGGCTCCAAGCGTACCGCTTCTTCCAG CGCTTGCGGGCCTCGGCCGAGAGGAACAAGGACCTCGAGGACTTGTGGAA AAGGCCCGGGGTGCCGAAGCCGAACTACGGGCTCGCCAAGTTCCTGGTGA GCGAGGGAGACCGGAAACTCACTACAGTCGTGGTCGCGCGGCATAGTGAC AAGCAAAAGCGTGCCGCGGTACAGTACATATGTCGGGACACCGCACTATT GAGTGTCGGGGGAACATATATCGTAGCCAAGATCCCGTGACAGCGTTATC CTTCGGGCCGCAGGCCCTTTGCGCGGCAACCGCCGCCAAGCCGCAGGCGT GCGCGGCAGTTCAGCCCCCCGCGTAGCCGCCGGAGGCAAAATTTTTAGAT TTCAGCCATTTTTTGCGGGAAATCTTTCGAAAAAATCAAGAATAACACGA AAAACGATGAAACGCAGATGTAGAGGGGAAAAGGTGTACGTATATATTTA GAGTTGTGTAAGACCGGGCAGTACTTCCCTTACTTTTGTACTCCTTCTCG TTGCTTTTACAAAGAAAAACACCCCCACACACAAGCAACAATATAAGAAA AGACCCCCCAATTTTTTTCTCGCCTGCGGCGAGAAAAATTGCCGCGCACG CGCTTTTTCATATTACCCGGCAAAAATGCACGATGCCGCGCTGCCGCGCC CCATTAAGATAACGCTGTCCCGTGACGAGCGGTTGTTTCCCCGGTATGTC GGGACCACGACGACTGGATTAGATTAGATTAGATTAGATGACAGCTGCTG TTAACGTTAACGTGCTCTTGGTTGTTGTGTGTTGAGGTGGTGCTCACGGT GGTGGTTGTCCTGGCCTGACAAGGCAAACACATCCCCTTTAGACCGCCTG TGGTTATATCTCGAACGGAATTGGACGTAGATTTTCTAGAAACGGAATTT CGGTGTTTCCCCAGGCAGTTCATATCTTTTTGTATTTCCACAAGTGAGCC GAGGACTTATTTCTTCTAGCGCGAAGAGCGCCAGCTGGAGAATAGCGCGA TTCACCCAGCTTTACACACACACCCTAATAGTAAGAACACACACCCACAT GTGGTGAGATGTTGGTGAGCAAACAAGTGGCTCGTGTGCGGCATGACAGA GAGAGATGCGACTCATGCGAGACCAACCTCTGCTCTCGTGTCGTATCGGA GGTGATTTTCCGGGCACCGTCCGCAGCCTACCCTTTTCTTTTTTTGTTCA CGTAGTTTACCCTTGGAATTCAGAGAAGCATAAGTGTGTGTCTGTCGATT GTGTATCGTTAGCAGTGTGGCATTACAAAAGAATGGGCAAAATGGATCGA GAGTAAATGTGGATGCGGGGTGTGGGGTGGCTGCGTTCGCCAGCGGCGGT AGTCTTCGGTTTGCTAGCTGGGTCCCTCTGACCACCCGATGTTCTTCTTG GCTGTGTGTGTTAAAAGACCATCTGAGGAATTGCCAACCGTCAAACTTTG CCACCATACTGACAGCCGTAGTGCAATCGTGCTGCTGCTGCTGCTGTTGT TGCTACTGTTGCTGCTGCCCCCCCACCGCTCCCGGCCGTAGATCTACCAA CCACAGTTTGGTATGGGCAACCAGCTTCGAGCGTTGGACGCGGCGTTAGC GGTTGCGAGGGTGCTTGGCCGGGTGCTGGTGGTGCCCGATTACATGGCCG ATAATGGAGAAGGTGAAAGCCGGCGC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6995:366..7841-

>mRNA_E_fasciculatus_S2_contig6995.15132.1 ID=mRNA_E_fasciculatus_S2_contig6995.15132.1|Name=mRNA_E_fasciculatus_S2_contig6995.15132.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1218bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6995:366..7841- (Ectocarpus fasciculatus EfasUO2)
GCCAAGCTCGCGCTTCACGTCTGGGCGCTCACGGCGCACGCGCGGGAGGT
GATGCCGGCCCAGGATGGCTTCGTGTGGACGCACGGCACGTACCAGTCCC
ACACGCTCACGACGAAGCACGGCGAGGTGCCTCCGCTGGAAGGGTGGGCG
AGAATGTGGACGGACCCGTTAGACACGGAGGTTCGGTTGGTGCTGCCGGA
GGGGCTGGAGCTGTCGAGCCTGTTCTACTTTTGGCTATCGAGCACGCTGT
CGAGGTACCTGGGTGCGGAGGTGACGATGGAGGAGCGGGAGATCTTCCGA
GAGAACGTGTTCGGGTTGTCCCTCTCCGCGACCGGGTTGTCGGAGGTTTC
GGGCAAGCCCTCGTCGTGGGAAGCGTACGAGGCCGCGGACAAGAAACGGC
CTGTGTTCCACACTCTCCCCGGGGCCAGAGGGACCGCCTTCTTTGGCTGG
AAGTGGGGAGCCTTCTCCGCATTCATGGACGCCCGAGCCAGAGTGCTGGA
GTCTGATTCGTGGGAGGGAGGCGAGTCGCTGGTACACGTCCCGGGGGGTG
AGGTGGCGCTTTCTTGGGCCGGGACCCTCGAGCGGTTCCTGGCAGAGTTT
TGCCACGGCAGGGGCCTCGGCATCCTCCACCCGAACCTCAACGGGGACGT
GAGCTTCGCCCGGCAGGCGCCGCCATCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCTTCCTCCGGTAGCAGCGCGGGGGGAAAAGGGTGGCTGGAG
GAGGAGGAAACTCTGCTGCTGTCGCAGTCGCAGACGGCACACACGCCGAC
GCCGACTCTGAGGGGGACGGAGGACGGGGGGGGGCGGGAGCCGGAGGAGC
TCGTATTGACGTACCGGGACGCTCATAACGTGGTTGTAAAATACCCATCT
GTGTCCTCCGTGTCAGCGTACGACCTCCTGTCCCGGAGACATCGGGACCT
GACGCACCTGCGGCTCCAAGCGTACCGCTTCTTCCAGCGCTTGCGGGCCT
CGGCCGAGAGGAACAAGGACCTCGAGGACTTGTGGAAAAGGCCCGGGGTG
CCGAAGCCGAACTACGGGCTCGCCAAGTTCCTGATCTACCAACCACAGTT
TGGTATGGGCAACCAGCTTCGAGCGTTGGACGCGGCGTTAGCGGTTGCGA
GGGTGCTTGGCCGGGTGCTGGTGGTGCCCGATTACATGGCCGATAATGGA
GAAGGTGAAAGCCGGCGC
back to top