mRNA_E_fasciculatus_S2_contig692.15056.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig692.15056.1
Unique NamemRNA_E_fasciculatus_S2_contig692.15056.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig692.15056.1 vs.
Match: XPA_C (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI3_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 2.250e-93
Identity = 266/309 (86.08%), Postives = 273/309 (88.35%), Query Frame = 3 
Query:   18 MNLTDEQRRRMEENRARAXXRLREKRETQVPAASAINGGETGASPPTPTSGRERTTQDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----AVACEGCGGEQDDARMDKELLEGFGISVCRTCKLSREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVAEYSFKRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSRSETEGDGITGGFL 932
            MNLTDEQRRRMEENRARA  RLREKRETQ+PAAS I+GGET ASPP PTSG E   QDG      XXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXX    AVACEGCGGEQDDARMDKELLE FGISVCRTCK+SREEFQYV+TKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREV  YS++RWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSRSETE DG+ GGFL
Sbjct:    1 MNLTDEQRRRMEENRARARARLREKRETQIPAASEIDGGETRASPP-PTSGPE-PKQDGGERAGSXXXXXXXXAQPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVGNISSXXXXXXXXAAVACEGCGGEQDDARMDKELLEAFGISVCRTCKMSREEFQYVTTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVVAYSYRRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSRSETEDDGVVGGFL 307
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig692.15056.1 vs.
Match: XPA_C (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX65_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 3.990e-74
Identity = 116/124 (93.55%), Postives = 119/124 (95.97%), Query Frame = 3 
Query:  561 MDKELLEGFGISVCRTCKLSREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVAEYSFKRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSRSETEGDGITGGFL 932
            MDKELLE FGISVCRTCK+SREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREV  YS+KRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSR ETE DG+TGGFL
Sbjct:    1 MDKELLEAFGISVCRTCKMSREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVVAYSYKRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSRPETEDDGVTGGFL 124
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig692.15056.1 vs.
Match: XPA_C (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE73_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.740e-29
Identity = 56/122 (45.90%), Postives = 87/122 (71.31%), Query Frame = 3 
Query:  525 CEGCGG-EQDDAR--MDKELLEGFGISVCRTCKLSREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVAEYSFKRWGSEDGLAAERRRRESLKYDRSLARTKGIF 881
            CE CG  + DD R  +D++LLE F ++VCR CK S+E ++ ++  DV+  +LLP+GTI VLK+VER+NP +  WT M+LYL ++   ++ KRW + + L  ER+RR++ K++ S+ RTKG+F
Sbjct:   64 CESCGARDTDDPRGTLDRKLLEAFDVAVCRNCKDSKEAYELMTKADVQKLFLLPEGTIRVLKYVERENPRNKGWTPMRLYLHKDARVWALKRWSTVEALEEERKRRDAKKWEESVKRTKGVF 185
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig692.15056.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXW5_HETAK)

HSP 1 Score: 119 bits (298), Expect = 1.800e-28
Identity = 51/129 (39.53%), Postives = 87/129 (67.44%), Query Frame = 3 
Query:  522 ACEGCGGEQDDARMDKELLEGFGISVCRTCKLSREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVAEYSFKRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSRSETEG 908
            +CE C   ++D+ +++   + F +SVC  CK+S ++++ ++  +V   + LP+GTI VL F+E++NP H +WT MKL+L+++V +YS  RWG  +GL  ERRRR+  K   +L RT G+ K+S++  +G
Sbjct:    7 SCEAC---REDSELNETFYQRFQVSVCNQCKISNDDYKLITKAEVVQMFCLPEGTIQVLDFIEKENPRHGTWTPMKLFLQKQVKKYSHDRWGGLEGLLQERRRRDEKKLKNALKRTSGLLKKSKAHHQG 132
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig692.15056.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3U265_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.160e-14
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 3 
Query:  540 GEQDDAR-MDKELLEGFGISVCRTCKLSREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVAEYSFKRWGSEDGLAAERRRRESLKYDRSLARTK 872
            GE++D    D E LE F           R+   YVS  + + TY LP+GTI VL FVERDNPH   ++KMKLY R EV   + KR+G + GL  ER +R+  +Y++ L   K
Sbjct:   76 GEREDCENSDDESLEEF----------ERDASAYVSKTEAQKTYCLPKGTIDVLSFVERDNPHQRGFSKMKLYSRAEVRRRARKRFGGKSGLITEREKRKMKRYEQELKEVK 177
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig692.15056.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXE3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.700e-14
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 3 
Query:  543 EQDDARMDKELLEGFGISVCRTCKLSREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVAEYSFKRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSR 893
            E++D  ++   LE F I             QYV+ +D K  Y LP GT+ V ++ E+DNP  S W KMKLY R E+   +  RWG  +GL  ERRRRE+ + ++ +A    +FK+ +
Sbjct:   67 EEEDENVE---LEDFEIGAS----------QYVTKQDAKGKYCLPDGTLEVCEYTEKDNPRQSKWNKMKLYNRSEIRRRARDRWGGLEGLQEERRRRENKRSEKDMAEGYRLFKKQK 170
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig692.15056.1 vs.
Match: XPA_C (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9F3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.460e-14
Identity = 44/122 (36.07%), Postives = 72/122 (59.02%), Query Frame = 3 
Query:  519 VACEGCGGEQDDARMDKELLEGFGISVCRTCKLSREEFQYVSTK-DVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVAEYSFKRWGSEDGLAAERRRRESLKYDRSLARTKGIF 881
            ++CE CG       +D    + F I+VC  CK + EE   + TK D    +LL +GT+ V+ ++ER+NP ++ + KMKLY RR +   +++RW   +GLA ER RR   +Y+ ++ +T  +F
Sbjct:  102 LSCEVCG----SGLVDPMYHDVFRITVCTPCKNNNEEEYGLVTKGDAVAEFLLQEGTMRVMPYLERNNPRNTKYQKMKLYCRRLLRAKAYERWDGPEGLAEERNRRRERRYESAIDKTLNVF 219
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig692.15056.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MFG3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.900e-14
Identity = 44/122 (36.07%), Postives = 65/122 (53.28%), Query Frame = 3 
Query:  543 EQDDARMDKELLEGFGISVCRTCKLSREEFQ-----YVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVAEYSFKRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSR 893
            E+D  R D   ++         C    E+F+     +V+  +    Y LP+GT+AV  +VE++NP    W KMKLY R E+   + KR+G  DGL  ER +R   ++++ L  TK IFKR R
Sbjct:   73 EEDKQRSDSCHIKNNKEENNEECTDDLEDFERDVGPHVTKSEAMQMYCLPEGTLAVCSYVEKENPRRKGWNKMKLYNRAEIRRRARKRYGGLDGLIEERAKRSMKRFEKDLEETKDIFKRKR 194
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig692.15056.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XPB6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.170e-14
Identity = 46/118 (38.98%), Postives = 62/118 (52.54%), Query Frame = 3 
Query:  537 GGEQDDARMDKELLEGFGISVCRTCKLSREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVAEYSFKRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRS 890
            GG +D    D   LE F I              +V+ ++   TY LP+GT+AV  FVE++NP    W+ MKLY R E+   +  R G  +GLAAER+RR   +    L  TK IFKR+
Sbjct:   76 GGNEDGGEKDDIELEDFEIGAST----------FVTKREAMQTYCLPEGTMAVCSFVEKENPRQKGWSSMKLYDRAEIRRRARDRHGGIEGLAAERKRRAEKRLRNDLETTKDIFKRN 183
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig692.15056.1 vs.
Match: Hypothetical (protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E1A0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.080e-14
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 3 
Query:  639 VSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRREVAEYSFKRWGSEDGLAAERRRRESLKYDRSLARTKGIFK 884
            V+ K+ K+ Y LP+GT+AV  FVE++NPH   W KMKLY R E+   + KR+G  +GL  ER  R   K+++ L +TK IFK
Sbjct:   71 VTKKEAKERYCLPEGTLAVCSFVEKENPHRKGWNKMKLYERFEIRLRARKRYGGLEGLIEERDERARKKFEKDLDKTKHIFK 152
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig692.15056.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
XPA_C2.250e-9386.08domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
XPA_C3.990e-7493.55domain-containing protein n=1 Tax=Ectocarpus silic... [more]
XPA_C4.740e-2945.90domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical1.800e-2839.53protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical1.160e-1442.86protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Hypothetical1.700e-1437.61protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
XPA_C2.460e-1436.07domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
Hypothetical3.900e-1436.07protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Hypothetical4.170e-1438.98protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
Hypothetical5.080e-1447.56protein n=1 Tax=Thalassionema nitzschioides TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig692contigE_fasciculatus_S2_contig692:4728..8406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score238.8
Seed ortholog evalue3.3e-60
Seed eggNOG ortholog2880.D7FX65
Preferred nameXPA
Model size1472
KEGG koko:K10847
KEGG Pathwayko01524,ko03420,map01524,map03420
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000109,GO:0000110,GO:0000715,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008340,GO:0008630,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009650,GO:0009791,GO:0009987,GO:0010225,GO:0010259,GO:0012501,GO:0016043,GO:0019904,GO:0022607,GO:0023052,GO:0031334,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0033683,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034644,GO:0035264,GO:0035556,GO:0036297,GO:0040007,GO:0040025,GO:0042221,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045171,GO:0046483,GO:0046872,GO:0046914,GO:0046983,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048589,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051276,GO:0051641,GO:0051716,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070727,GO:0070911,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0097190,GO:0097193,GO:0104004,GO:1901255,GO:1901360,GO:1901363,GO:1990391
Exons5
EggNOG free text desc.nucleotide-excision repair involved in interstrand cross-link repair
EggNOG OGsCOG5145@1,KOG4017@2759
Ec32 ortholog descriptionDNA binding domain, putative
Ec32 orthologEc-10_004460.1
Cds size918
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig692.15056.1prot_E_fasciculatus_S2_contig692.15056.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig692 4745..7869 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842349.240013-UTR-E_fasciculatus_S2_contig692:4727..47441696842349.240013-UTR-E_fasciculatus_S2_contig692:4727..4744Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig692 4728..4744 +
1696842349.302317-UTR-E_fasciculatus_S2_contig692:7869..84061696842349.302317-UTR-E_fasciculatus_S2_contig692:7869..8406Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig692 7870..8406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842349.2521257-CDS-E_fasciculatus_S2_contig692:4744..48271696842349.2521257-CDS-E_fasciculatus_S2_contig692:4744..4827Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig692 4745..4827 +
1696842349.2614245-CDS-E_fasciculatus_S2_contig692:5542..60561696842349.2614245-CDS-E_fasciculatus_S2_contig692:5542..6056Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig692 5543..6056 +
1696842349.2709742-CDS-E_fasciculatus_S2_contig692:6370..64991696842349.2709742-CDS-E_fasciculatus_S2_contig692:6370..6499Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig692 6371..6499 +
1696842349.2828023-CDS-E_fasciculatus_S2_contig692:7263..73921696842349.2828023-CDS-E_fasciculatus_S2_contig692:7263..7392Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig692 7264..7392 +
1696842349.2925844-CDS-E_fasciculatus_S2_contig692:7806..78691696842349.2925844-CDS-E_fasciculatus_S2_contig692:7806..7869Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig692 7807..7869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig692.15056.1

>prot_E_fasciculatus_S2_contig692.15056.1 ID=prot_E_fasciculatus_S2_contig692.15056.1|Name=mRNA_E_fasciculatus_S2_contig692.15056.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=306bp
MNLTDEQRRRMEENRARARARLREKRETQVPAASAINGGETGASPPTPTS
GRERTTQDGGEKAGGASGAGGADAQLEEDQQGPSPQQQPTTPAAAAAVAS
SSSSSLSAAAPPSAAAASAAVTSLANGSTRCGGGGARGTRAGGGGGDKGR
AAGNSSRSDGGGAGAAAVACEGCGGEQDDARMDKELLEGFGISVCRTCKL
SREEFQYVSTKDVKDTYLLPQGTIAVLKFVERDNPHHSSWTKMKLYLRRE
VAEYSFKRWGSEDGLAAERRRRESLKYDRSLARTKGIFKRSRSETEGDGI
TGGFL*
back to top

mRNA from alignment at E_fasciculatus_S2_contig692:4728..8406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig692.15056.1 ID=mRNA_E_fasciculatus_S2_contig692.15056.1|Name=mRNA_E_fasciculatus_S2_contig692.15056.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3679bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig692:4728..8406+ (Ectocarpus fasciculatus EfasUO2)
AGTGTGGGACGTAGACCATGAACCTCACCGATGAGCAGCGGCGGCGAATG
GAAGAGAACCGCGCGAGGGCCAGGGCCCGTTTGCGCGAGAAAAGAGAAAC
GTGAGCACGGGTGGCATCCTTTGTTCTGTGCTATTGAAAGTGTCTACATA
TGTTTGAAATCGGTTCCTGCGGAGTGTCTCCTCGCGTTTCGTGCAAAATG
CAAGCGCGTTCGTCCGGGCCTGTCAGGTGCGACTTACTTGTGTGAAGTAC
ACAGCAGAGCACCCACTTTAGCAAGTGTCAAGAAAAAATTGCTCTCGTAT
CGCTGGAGGCTGCACCACTGCTGCGCTTATATTAAACCACAGGTTCGGCT
CCAGAGCTTCAAATATTCGCTGTCACGAAATCGCGTCAACTCGCGCGCCG
CGCTTGGTTGTGCTGCTGTCTTCTTTGTATTCTCTTACTGCTATGAGGTT
TCTGCTGTCTGTCTGCGTGTATACCTCAACTTTTGGTCAGACAGAGCATC
CACCGTGCTGGGGTGCGTTTCGGATTCTGTCCAAACCCATGGACATATAG
TCTATGCCACTTTTCTTCAAAACTCAGGCGCGAAAGCTTGGCAACAAGCA
CTACAGAGTGTACGCAGTTTACAGTATGGTGTGGTGTGGGCCATGGCTTC
CACCGCCGCGTACTGAGACGAAGAAGACTGGATACAGCAGTAGCCTACTA
CATGTAGTGTAGACACCTCAAGACTGCCGCGTTTTCCGGAAATTACTGGT
GCCCCTTGCCGTCACGTCCATCAAACCGACCCTGCCGTGTTCTTCCCACT
CTATTCACCCAACAGGCAAGTTCCTGCAGCCTCGGCAATCAACGGAGGCG
AAACCGGCGCGTCTCCACCGACACCTACTAGCGGCCGAGAACGGACGACA
CAGGACGGCGGCGAAAAAGCTGGCGGTGCTAGTGGTGCCGGCGGTGCAGA
TGCCCAACTCGAAGAAGATCAACAAGGACCGTCGCCTCAACAACAACCGA
CAACACCAGCGGCAGCAGCTGCAGTGGCATCATCATCATCATCATCATTA
TCAGCAGCAGCACCTCCATCGGCAGCAGCAGCATCAGCAGCAGTCACTTC
ATTAGCGAATGGTTCCACCAGATGTGGAGGAGGGGGTGCGCGAGGAACTC
GCGCGGGCGGCGGGGGTGGGGATAAAGGTAGAGCGGCTGGTAATAGTAGT
AGGAGTGATGGTGGCGGAGCAGGTGCGGCAGCGGTCGCGTGTGAGGGGTG
TGGAGGCGAGCAGGACGACGCGCGGATGGACAAGGAGCTGCTGGAAGGGT
TCGGGATTTCGGTTTGCCGCACTTGCAAGGTTGGTCATAACCCGAACGCA
TCTATACTACGTAACGCGAGCCGTTTCGGGGGTATTGTCTGTCAACGGAA
GGAGACGAGGCGCGCAAGATGAAGTCGAGAATAATACCCTTGGTGTTTCG
GGGGTGGGGGGTTTCTCGTGTTTACGTTTCCGCTTGGTTCACGGCTTGCC
GGGAGTTCCCTTCATGATTCGGTATTAAATAGTATTCCAGTCTCTTCTCG
CTCGCCACATTGACCCCCGATTCCTCGTCCGGTGACTTTAACACGGTTTT
TGGGGTCGGGTGTGTCTGCTGCTGTGCTGTACCTGTACCACAGCTGTCGC
GAGAAGAGTTCCAGTACGTCTCCACCAAGGACGTCAAGGACACGTACCTC
CTGCCTCAGGGCACCATCGCAGTCCTCAAGTTTGTCGAGCGGGACAACCC
GCACCACTCTAGCTGGACAAAGGTATACACCATACCGCTGGATTCTCTTA
CGAAATCTGCTACTTCGTAGGTCAATCTATTCCGGCCAGGGTCGCCGAAC
CTTCACTGTATGGACTCTTGCAAATTTCAGGAACTTTCTGGAAACTTCCC
TTTCGGTCCATTCTCGGGGGTTGGGCACACCCTAAGGTCAACTACATGTA
GTTTTCTATAACCCTCCATGTACGAGGTTTAGTTGTAGTTTTGTGAGATA
ATTTTTCATGGGAAATAGCTTTTGGGTTTGATGGTCCACTGTTCGCAGCA
TGTTGAACATGTCGGTTTTCTTTGCCTTGCTTCGTCGATGCCATGTGTCG
CTTCGATGGATGGATGAATTGCAGCAATCGAGCATTTTCGAGTCGCAAGG
ATCGAACACTTTCAGTGTGCCTTTCCGAGGTTACAGCGTTCTCTGCCGAA
AAATGAAAGCACCCCGGAGCGCCACCCCCTCTCTATGTCTACGTTGCTGT
TTTTTCTTGTGAGTCCGCGTGGATAGTCAGAATGCTCTGTGCTTGGCGCC
TCTGTCGACCCCTTTCTCACTTTTATTCGTCGTAATTGCTGCGCGAGCTG
CTCGTGTTCCAGGCCAACTTTAGTCACGCTCAGTGCACTAGCGTAGGGCA
CTCCTCACTAACGCAATCCCTTTCAAAACACATGACGCTGCTGCTGTTCT
TGTGCTTCCCTTCTCCCTCTCATGCACGCACCGCGCCGCCCTCTATCCCC
CTTGCTCACTTCCCGTGCTCTCCTCGCTCATTTCAGATGAAGCTTTACCT
CCGTAGAGAGGTCGCCGAGTATAGTTTCAAGCGTTGGGGTAGTGAAGACG
GCCTCGCCGCGGAGAGGCGAAGACGAGAGTCGCTCAAGTACGACCGATCC
CTCGCGCGGACCAAGGTGTGTATCCATGAGCACCACACGCTTTCGTTCGG
TACCGCAGTCTGTGTAACAGCAGCCAGGAGCACGTGTCGGAACACCTTGG
CTTCGAAAGCTGAGAGTGTGGCGTGCTAATCACCATAAGGTAGCTCGTGT
TGGTTTATTTATCATTGTTGGCGATATCGGTACGGCGTCGAGATGTCCTT
CGAGGTGAACGCAAGATGATGCCGGGGTGGTTCTGCAATGTATGGTGGAG
GAGACGAACACGGGATTAGCTGTCGTCGCGCACAGCACAAACGCCGCGGG
ACATCTACTGGAGGCTGTTGTACACGACCATGATGACTGTTGCGCATTGA
TGCTTGCAGTATGATTCACCGTTGCCCCCCGCCCCCCACCCTCTGCGGCA
ATCCTCCCCGTGCCTCTCCGACCCGACAGGGTATATTCAAACGTTCCAGA
TCCGAAACAGAAGGCGATGGCATCACAGGCGGCTTCCTATGACGCATGGC
ACAGTGTACAAGATTGGAAGCTCCGGAAGCTGTTCCTGGCAGTAGTCGAT
CCACGAATATTCGACCGCGGTCTTCTGCGTGTTTTACATCGCACCCGGGT
GCTGCTGGTTTTGTGAAAACAACCATGGGCGTGATCGATTTGTAGGACGT
TATATTGCTACAATGCGCAAGATTTTGCGTGTGCATTTTGGGGGTCTGTA
CTCCACGTCTCACACGTTGGTCCTAAGCTGTTGTGTATTCCTCTGTATGG
TGTTTCTGTGCTGTGAAGGGGAGATTGGACATTTTTCTCTCCCACGCGCG
AACGAAGGCACTAGGTGTTACGCACCTGATGGGTCTGCCCCAGGCGTTCA
CAACGACAGCAAATGTGTTTCATGTATGCATAGGTTCTGGCTCGGTAGTT
GCAAGTTGCTGACGCAATGGAGAATCCTGCCCAGTGGAAAAAAGTGAAGA
AAGCTATGTTCATCGTGTGGCGAGTTCAGGGCCAGGAAGAACAATCGAAA
GGGACAATATATCGACCTCCCGCCTGCGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig692:4728..8406+

>mRNA_E_fasciculatus_S2_contig692.15056.1 ID=mRNA_E_fasciculatus_S2_contig692.15056.1|Name=mRNA_E_fasciculatus_S2_contig692.15056.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=918bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig692:4728..8406+ (Ectocarpus fasciculatus EfasUO2)
ATGAACCTCACCGATGAGCAGCGGCGGCGAATGGAAGAGAACCGCGCGAG
GGCCAGGGCCCGTTTGCGCGAGAAAAGAGAAACGCAAGTTCCTGCAGCCT
CGGCAATCAACGGAGGCGAAACCGGCGCGTCTCCACCGACACCTACTAGC
GGCCGAGAACGGACGACACAGGACGGCGGCGAAAAAGCTGGCGGTGCTAG
TGGTGCCGGCGGTGCAGATGCCCAACTCGAAGAAGATCAACAAGGACCGT
CGCCTCAACAACAACCGACAACACCAGCGGCAGCAGCTGCAGTGGCATCA
TCATCATCATCATCATTATCAGCAGCAGCACCTCCATCGGCAGCAGCAGC
ATCAGCAGCAGTCACTTCATTAGCGAATGGTTCCACCAGATGTGGAGGAG
GGGGTGCGCGAGGAACTCGCGCGGGCGGCGGGGGTGGGGATAAAGGTAGA
GCGGCTGGTAATAGTAGTAGGAGTGATGGTGGCGGAGCAGGTGCGGCAGC
GGTCGCGTGTGAGGGGTGTGGAGGCGAGCAGGACGACGCGCGGATGGACA
AGGAGCTGCTGGAAGGGTTCGGGATTTCGGTTTGCCGCACTTGCAAGCTG
TCGCGAGAAGAGTTCCAGTACGTCTCCACCAAGGACGTCAAGGACACGTA
CCTCCTGCCTCAGGGCACCATCGCAGTCCTCAAGTTTGTCGAGCGGGACA
ACCCGCACCACTCTAGCTGGACAAAGATGAAGCTTTACCTCCGTAGAGAG
GTCGCCGAGTATAGTTTCAAGCGTTGGGGTAGTGAAGACGGCCTCGCCGC
GGAGAGGCGAAGACGAGAGTCGCTCAAGTACGACCGATCCCTCGCGCGGA
CCAAGGGTATATTCAAACGTTCCAGATCCGAAACAGAAGGCGATGGCATC
ACAGGCGGCTTCCTATGA
back to top