mRNA_E_fasciculatus_S2_contig69.15031.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig69.15031.1
Unique NamemRNA_E_fasciculatus_S2_contig69.15031.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig69.15031.1 vs.
Match: SNRNP27 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW65_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.560e-83
Identity = 158/170 (92.94%), Postives = 161/170 (94.71%), Query Frame = 1 
Query:  118 RSSRKRSPSRRHFREDGGKDAAXXXXXXXXXXXXVDKSKGTTNETTKPSKQEARRAEAAIKRQKMLEEQQREKDKVKDRLHLIRQMKGDASGEEDAHGSGSDGXXXXXXLTEEQQMMKLMGFAGFDTSKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 627
            RSSRKRSP RRHFREDGGKDAAXXXXXXXXXXXX      TT+ET+KPSKQEARRAEAAIKRQKMLEEQQREKDKVKDRLHLIRQMKGDASGEEDA GSGSDG XXXXXLTEEQQMMKLMGFAGFDT+KGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM
Sbjct:   39 RSSRKRSPPRRHFREDGGKDAAXXXXXXXXXXXXXXXXXXTTSETSKPSKQEARRAEAAIKRQKMLEEQQREKDKVKDRLHLIRQMKGDASGEEDALGSGSDGDXXXXXLTEEQQMMKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 208
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BLAST of mRNA_E_fasciculatus_S2_contig69.15031.1 vs.
Match: SNRNP27 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.420e-23
Identity = 46/61 (75.41%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:  445 LTEEQQMMKLMGFAGFDTSKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 627
            ++EEQQMM+++GF GFD++KGK VEDN++G AKGA+SKHKER+YRQYMNRRGGFNRPL KM
Sbjct:  162 MSEEQQMMRMLGFGGFDSTKGKAVEDNKKGAAKGAVSKHKERKYRQYMNRRGGFNRPLAKM 222
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BLAST of mRNA_E_fasciculatus_S2_contig69.15031.1 vs.
Match: SNRNP27 (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFD5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.210e-18
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:  445 LTEEQQMMKLMGFAGFDTSKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLD 621
            LTEE+QM  LMGF GFD++KGK VEDN +G A GA+ K K+R+YRQYMNRRGGFNRPL+
Sbjct:  196 LTEEEQMQALMGFGGFDSTKGKPVEDNAKGVAAGAVGKEKKRQYRQYMNRRGGFNRPLE 254
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BLAST of mRNA_E_fasciculatus_S2_contig69.15031.1 vs.
Match: U4/U6.U5 (small nuclear ribonucleoprotein 27 kDa protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0V1_PYTIN)

HSP 1 Score: 87.8 bits (216), Expect = 4.720e-18
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:  445 LTEEQQMMKLMGFAGFDTSKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLD 621
            L+EE+QM  L+GF GFD++KGK VEDN  GPA GA  K  +REYRQYMNRRGGFNRPLD
Sbjct:  133 LSEEEQMQMLLGFGGFDSTKGKSVEDNAVGPAAGAARKETKREYRQYMNRRGGFNRPLD 191
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BLAST of mRNA_E_fasciculatus_S2_contig69.15031.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZL9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.100e-17
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:  346 KDRLHLIRQMKGDASGEEDAHGSGSDGXXXXXXLTEEQQMMKLMGFAGFDTSKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRG 600
            K R+ ++++M+G  S EED       G      +TEE+QM  LMGF GFDT+KGK VEDN+   AKG ++KHK REY+QYMN++G
Sbjct:   74 KSRMEMLKRMQGVESDEEDGXXXXXGGKKSLEGMTEEEQMASLMGFGGFDTTKGKAVEDNKSTAAKGHVAKHKRREYKQYMNKKG 158
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BLAST of mRNA_E_fasciculatus_S2_contig69.15031.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PY04_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.660e-17
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:  445 LTEEQQMMKLMGFAGFDTSKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 627
            + EE QMMKL+GF GFD++K K VEDN+   A+G+ +K+K R+YRQYMNR+GGFNRPLDKM
Sbjct:  112 MDEEDQMMKLLGFGGFDSTKDKEVEDNKNSLARGSAAKNKARKYRQYMNRKGGFNRPLDKM 172
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BLAST of mRNA_E_fasciculatus_S2_contig69.15031.1 vs.
Match: SNRNP27 (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFH3_GLOUD)

HSP 1 Score: 85.9 bits (211), Expect = 6.400e-17
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:  445 LTEEQQMMKLMGFAGFDTSKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLD 621
            LTEE+QM  LMGF GFD++KGK VEDN +G A G + K  +R YRQYMNRRGGFNRPLD
Sbjct:  178 LTEEEQMQALMGFGGFDSTKGKVVEDNAKGVATGGVRKESKRAYRQYMNRRGGFNRPLD 236
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BLAST of mRNA_E_fasciculatus_S2_contig69.15031.1 vs.
Match: DUF1777 (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2G0_9ARCH)

HSP 1 Score: 84.3 bits (207), Expect = 1.070e-16
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:  451 EEQQMMKLMGFAGFDTSKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 627
            EE+ +  LMGFAGF ++KGK VEDN  G A G +SKHK R+YRQYMNR+GGFNRPL KM
Sbjct:  137 EEEDVAMLMGFAGFGSTKGKQVEDNAHGAAAGGVSKHKARKYRQYMNRKGGFNRPLQKM 195
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig69.15031.1 vs.
Match: SNRNP27 (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB98_THAPS)

HSP 1 Score: 83.2 bits (204), Expect = 1.580e-16
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:  451 EEQQMMKLMGFAGFDTSKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 627
            E+  MM+++GF GF ++KGK V+DNQ   A+GA SK+K R+YRQYMNR+GGFNRPLDKM
Sbjct:  109 EQDDMMQMLGFGGFGSTKGKAVQDNQSSAARGAASKNKGRKYRQYMNRKGGFNRPLDKM 167
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BLAST of mRNA_E_fasciculatus_S2_contig69.15031.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDQ2_PYTOL)

HSP 1 Score: 83.6 bits (205), Expect = 2.570e-16
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:  445 LTEEQQMMKLMGFAGFDTSKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLD 621
            L+EE+QM  L+GF GFD++KGK VEDN  G A GA+ K  +REYRQYMNRRGGFNRPL+
Sbjct:  145 LSEEEQMRLLLGFGGFDSTKGKAVEDNVEGAATGAVRKDIKREYRQYMNRRGGFNRPLE 203
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig69.15031.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
SNRNP271.560e-8392.94domain-containing protein n=1 Tax=Ectocarpus silic... [more]
SNRNP273.420e-2375.41domain-containing protein n=1 Tax=Tribonema minus ... [more]
SNRNP273.210e-1871.19domain-containing protein n=1 Tax=Pythium brassicu... [more]
U4/U6.U54.720e-1871.19small nuclear ribonucleoprotein 27 kDa protein, pu... [more]
Hypothetical1.100e-1750.59protein (Fragment) n=1 Tax=Florenciella parvula Ta... [more]
Hypothetical1.660e-1765.57protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
SNRNP276.400e-1769.49domain-containing protein n=1 Tax=Globisporangium ... [more]
DUF17771.070e-1667.80domain-containing protein n=1 Tax=archaeon TaxID=1... [more]
SNRNP271.580e-1664.41domain-containing protein n=1 Tax=Thalassiosira ps... [more]
Uncharacterized2.570e-1667.80protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig69contigE_fasciculatus_S2_contig69:52356..54330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score258.1
Seed ortholog evalue3.6e-66
Seed eggNOG ortholog2880.D7FW65
Preferred nameSNRNP27
Model size630
KEGG koko:K12846
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030097,GO:0030154,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0042386,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0070013,GO:0071011,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons6
EggNOG free text desc.RNA splicing
EggNOG OGsKOG3263@1,KOG3263@2759
Ec32 ortholog descriptionDomain of unknown function DUF1777
Ec32 orthologEc-01_003560.1
Cds size630
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig69.15031.1prot_E_fasciculatus_S2_contig69.15031.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig69 52356..54330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842347.0940318-CDS-E_fasciculatus_S2_contig69:52355..524921696842347.0940318-CDS-E_fasciculatus_S2_contig69:52355..52492Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig69 52356..52492 +
1696842347.1074176-CDS-E_fasciculatus_S2_contig69:52697..527961696842347.1074176-CDS-E_fasciculatus_S2_contig69:52697..52796Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig69 52698..52796 +
1696842347.1273472-CDS-E_fasciculatus_S2_contig69:53206..533491696842347.1273472-CDS-E_fasciculatus_S2_contig69:53206..53349Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig69 53207..53349 +
1696842347.139855-CDS-E_fasciculatus_S2_contig69:53562..536361696842347.139855-CDS-E_fasciculatus_S2_contig69:53562..53636Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig69 53563..53636 +
1696842347.1511278-CDS-E_fasciculatus_S2_contig69:53918..540631696842347.1511278-CDS-E_fasciculatus_S2_contig69:53918..54063Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig69 53919..54063 +
1696842347.1702123-CDS-E_fasciculatus_S2_contig69:54298..543301696842347.1702123-CDS-E_fasciculatus_S2_contig69:54298..54330Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig69 54299..54330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig69.15031.1

>prot_E_fasciculatus_S2_contig69.15031.1 ID=prot_E_fasciculatus_S2_contig69.15031.1|Name=mRNA_E_fasciculatus_S2_contig69.15031.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=210bp
MGRSRSRSRSRERGGREERGRGDRDRDRGGRRRDRDQDSRSSRKRSPSRR
HFREDGGKDAAGKDAAGRDKSGKVDKSKGTTNETTKPSKQEARRAEAAIK
RQKMLEEQQREKDKVKDRLHLIRQMKGDASGEEDAHGSGSDGDDDDEDLT
EEQQMMKLMGFAGFDTSKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRG
GFNRPLDKM*
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mRNA from alignment at E_fasciculatus_S2_contig69:52356..54330+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig69.15031.1 ID=mRNA_E_fasciculatus_S2_contig69.15031.1|Name=mRNA_E_fasciculatus_S2_contig69.15031.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1975bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig69:52356..54330+ (Ectocarpus fasciculatus EfasUO2)
ATGGGACGTAGCCGAAGTCGCAGCCGCAGCCGCGAAAGGGGAGGGCGAGA
AGAGAGGGGCCGCGGAGATCGAGATCGTGACCGAGGCGGAAGACGCCGCG
ATCGCGACCAGGACAGCAGAAGCAGCCGGAAGCGAAGGTGTGATCTGAGG
GAAGTAGAGGTACTTGGCCGTCCCTGCTTTGTTGGGATTGCTGAATGGTG
CTGCTGCCGGTTTATATCAAAACATTGACGGAACACTCCACAAGCCAGTT
GTGAACCCTCATCTACTGCTGAGACCCAAAACTGCTGTAGATTTTTGACA
CCCGGTATGCTCTCGGTTCGCGTCCAATACTTACATATGTAGCCCATCTC
GACGACACTTCCGGGAGGATGGAGGCAAGGACGCTGCTGGCAAGGATGCT
GCTGGCAGGGACAAGTCCGGCAAGGTGGACAAGTCAAAAGGGTGAGTTCA
CCTCTGGTAACAAGCACACCGGGGTGGAGAAGCGCTGATCTGCGGGGCGT
GCTTGCGCGAAGACCGAACCCCGTCGCTCTAGCCTTGCCAGTGTACTTTA
CAATATTAGCAGCAGCTCAACTCTCCCGTGTTCCATGTCGTACAGCAGTG
GGGAAAGTTAGCAGCTTGACATCCGCTTTCGCTTTGGTGTTGCCGTGAGA
TTCGGAGCAACCCAACCGTTCTGTGCTTCGCTAGAGCGCTAATTTACGAG
CGGAAGATTATTGCTGAGTTTCTGGATGCTGGGGCTCCGACGTAAAGGCG
GGATGTGCTCTCAACCTTGGAAGGAGGAACCCGCCACTCCCCTGCTTCTA
TTTTGGTAGTCACCGCTTACACGTTGTGCGCACGGCCCGCTCCCGCTGTA
GAACGACGAACGAGACAACAAAACCTTCCAAGCAAGAAGCACGAAGGGCG
GAGGCAGCTATCAAGAGACAAAAGATGCTGGAGGAGCAGCAGCGGGAGAA
GGACAAAGTGAAGGATCGGCTTCATTTGATCCGTCAAATGAAAGGTACGC
GCGGCCCCCGTTTCGCCACTGCTGTGGCGGCTTGCAGTCTGATGTGGCTC
GTTTGCCACTTCGATTCTACGGAATGGTGAGCTGTGAGCTCCGCACAACC
CAATTTTTTTTTGGCGCCGCCTGCCTACTCCTATTCGGTGCACACGCTTC
CAACTTAGACCGGGATTTATATGCCCACGAACTGAGCTGAATCCTTGTTT
TTCCCAGGTGATGCTTCAGGAGAGGAGGATGCCCATGGTAGTGGAAGCGA
TGGCGACGACGATGATGAGGATTTGACAGAGGTAAGATGCATACCTTGCC
CGAATAAGGTCTACCGTGGTCCGTACGGCTCCACGAGCACGAACGCCGAG
CATGTTAGCTTTCAAACACGACGCCGGCACCTACAAGAGAATGAGGCCAC
GGGCCACGTACACACGTTGCCTTGTTCGTTTGGTTGGGGTTGCTCAACGA
TGATGCAGTTCATCTCCCACTGCCAAAGCCAGCATACAATACGTGAGTAC
GCAATCAACCCGTGGTGAGTGAAAAATACAAAAATACGGCGCTTCGCTCT
CGATCTCAAACAGGAGCAACAAATGATGAAGTTGATGGGGTTTGCGGGGT
TTGACACTTCCAAAGGGAAGGGAGTCGAAGACAACCAGCGAGGACCTGCA
AAAGGCGCGATCTCGAAGCACAAGGAACGAGAGTATCGGCAGTATATGAA
TCGACGAGGTACGTGGCAATGAGTCGAAGATATTTTCTTGTATCAGATTA
CCCTTTTAGTTAATGAACTCATGTTTGCCTGGTATAAACGGATTTGATTC
CACCCCGCTGCATGTCCTTGTGTGTACGCCAAAGTCGAGAACACACAACG
CAGTTTTGAACACGTCGCAACTGGAGAGCACACTTCCACTTCGCTGCAGA
TTTGAACACCAACCGGTAACGAAACAACCTGATCTCGACCCAGGTGGATT
CAACCGCCCTTTGGACAAGATGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig69:52356..54330+

>mRNA_E_fasciculatus_S2_contig69.15031.1 ID=mRNA_E_fasciculatus_S2_contig69.15031.1|Name=mRNA_E_fasciculatus_S2_contig69.15031.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=630bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig69:52356..54330+ (Ectocarpus fasciculatus EfasUO2)
ATGGGACGTAGCCGAAGTCGCAGCCGCAGCCGCGAAAGGGGAGGGCGAGA
AGAGAGGGGCCGCGGAGATCGAGATCGTGACCGAGGCGGAAGACGCCGCG
ATCGCGACCAGGACAGCAGAAGCAGCCGGAAGCGAAGCCCATCTCGACGA
CACTTCCGGGAGGATGGAGGCAAGGACGCTGCTGGCAAGGATGCTGCTGG
CAGGGACAAGTCCGGCAAGGTGGACAAGTCAAAAGGAACGACGAACGAGA
CAACAAAACCTTCCAAGCAAGAAGCACGAAGGGCGGAGGCAGCTATCAAG
AGACAAAAGATGCTGGAGGAGCAGCAGCGGGAGAAGGACAAAGTGAAGGA
TCGGCTTCATTTGATCCGTCAAATGAAAGGTGATGCTTCAGGAGAGGAGG
ATGCCCATGGTAGTGGAAGCGATGGCGACGACGATGATGAGGATTTGACA
GAGGAGCAACAAATGATGAAGTTGATGGGGTTTGCGGGGTTTGACACTTC
CAAAGGGAAGGGAGTCGAAGACAACCAGCGAGGACCTGCAAAAGGCGCGA
TCTCGAAGCACAAGGAACGAGAGTATCGGCAGTATATGAATCGACGAGGT
GGATTCAACCGCCCTTTGGACAAGATGTAG
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