mRNA_E-fasciculatus_F_contig10865.700.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10865.700.1
Unique NamemRNA_E-fasciculatus_F_contig10865.700.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.190e-17
Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  152 VLTRVFAMDDCMTSIKSRVSYIRISGCGQKTPAAESKTLVEVIWKLPRQSSARFRRRASETMCRVMRGDPDLVRDIEGESNHPICFA*SVRVQGGREVERTWSRSLSY 475
            +L RV   DD   SIKSRVSYI+I G G K+P  +  TLVE+IW LP  SS  FRR+++ET+CRVM GD  L R IE  +    C      V+GG  +++   R + Y
Sbjct:  172 MLKRVLERDDREPSIKSRVSYIKIDGSGNKSPVTDFNTLVEIIWMLPTGSSREFRRKSAETICRVMGGDLSLCRQIEQNALGWNC------VEGGEAIQQALLRPVKY 273          
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.590e-14
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  445 RTNMVKKSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAYTADV 678
            ++  VK+  VR  LA  V G  +  TP+G IDVLSGTEVIEVK+  + KHGLGQ+ A   + P   KRL LFA+  +V
Sbjct:   46 KSTSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFAHAGEV 123          
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.760e-11
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  448 TNMVKKSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAYT 669
            T  V++ +VR  LAF V G  +  TPSG IDVLS TEVIEVK+    K GLGQ+   Q ++P  ++RL LFA++
Sbjct:  713 TERVRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFAHS 786          
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.530e-10
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 1
Query:  457 VKKSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFA 663
            V++  VR  LA  V G  +  TP G IDVLS TEVIEVKH +  KHGLGQ+ + Q ++P   KRL LFA
Sbjct:   51 VREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHYPHLDKRLHLFA 119          
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.370e-9
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  457 VKKSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAYTADVD 681
            VK+S VR  LA  V G  +  TP G IDVLS TEVIEVK+  + +  LGQ+ A Q Y+P   KR+ LFA T   D
Sbjct:  204 VKESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVLAYQAYYPGLAKRVHLFAQTGKKD 278          
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: B5LW94_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC)

HSP 1 Score: 67.8 bits (164), Expect = 2.290e-9
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  463 KSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAYTADV 678
            ++++R  LA ++ G  + RTP G+IDVL+ TEVIEVKH     HG GQ+     Y PL  KRL LFA   DV
Sbjct:  290 EAVIRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVMGYGEYHPLLKKRLHLFALIEDV 361          
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: A0A835YW01_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW01_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.500e-8
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query:  457 VKKSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAY 666
            V++  VR  LA  + G  + ++P+G  DV++ TEVIEVK C   KH LGQ+ A   +    +KR+ LFAY
Sbjct:   57 VRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY 126          
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: UPI0012E8E8BA (hypothetical protein n=1 Tax=Phormidesmis priestleyi TaxID=268141 RepID=UPI0012E8E8BA)

HSP 1 Score: 59.7 bits (143), Expect = 1.020e-7
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  436 SRGRTNM---VKKSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAYTADVDK*V--QIC 699
            SRGR+       + + R  LA T+ G  +  TP+G++D+++ TE+IEV+  +  KH LGQI A   Y+P   KR+ L+    +VD  V  QIC
Sbjct:   28 SRGRSRKGAHKSEGMYRDQLARTLSGVTEVTTPTGRVDIVTRTEIIEVEAAARWKHALGQILAYCYYYPSHQKRIHLYR---EVDPTVLDQIC 117          
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: A0A6H5JDC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.620e-7
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:  487 AFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAY 666
            A TV G  +  TP G IDVLS TEVIE+K+  + KH LGQ+    L++P   KRL LFA+
Sbjct:  239 AETVDGQTEVETPVGIIDVLSKTEVIEMKYNKKWKHALGQVLDYHLFYPRLAKRLHLFAH 298          
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: UPI001D2F14B2 (hypothetical protein n=1 Tax=Waterburya agarophytonicola TaxID=2886916 RepID=UPI001D2F14B2)

HSP 1 Score: 56.2 bits (134), Expect = 2.900e-6
Identity = 30/84 (35.71%), Postives = 45/84 (53.57%), Query Frame = 1
Query:  445 RTNMVKK----SLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAYTADVDK 684
            R N  KK    S  R  LA +++G  + R PSG+ID+L+  ++IEVKH  +    LGQ+     ++P   KR+ LF    +  K
Sbjct:   53 RANKPKKKRNESYYRDKLAKSLNGQTEVRVPSGRIDILTSNQIIEVKHIKKWNAALGQVITYGYHYPNHQKRIHLFGVENNSSK 136          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JJP2_9PHAE1.190e-1746.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G319_ECTSI3.590e-1450.00FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L5N7_9PHAE6.760e-1150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP52_ECTSI2.530e-1053.62FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L807_9PHAE1.370e-950.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LW94_9PHYC2.290e-948.61Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A835YW01_9STRA2.500e-842.86FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
UPI0012E8E8BA1.020e-738.71hypothetical protein n=1 Tax=Phormidesmis priestle... [more]
A0A6H5JDC2_9PHAE1.620e-751.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001D2F14B22.900e-635.71hypothetical protein n=1 Tax=Waterburya agarophyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10865contigE-fasciculatus_F_contig10865:3850..4634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue8.6e-08
Seed eggNOG ortholog2880.D8LP49
EggNOG OGs2EUDG@1,2SWJG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size785
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10865.700.1prot_E-fasciculatus_F_contig10865.700.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10865 4022..4264 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.8794892-UTR-E-fasciculatus_F_contig10865:3849..40211622927586.8794892-UTR-E-fasciculatus_F_contig10865:3849..4021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10865 3850..4021 +
1695995608.4611921-UTR-E-fasciculatus_F_contig10865:3849..40211695995608.4611921-UTR-E-fasciculatus_F_contig10865:3849..4021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10865 3850..4021 +
1622927586.9054458-UTR-E-fasciculatus_F_contig10865:4264..46341622927586.9054458-UTR-E-fasciculatus_F_contig10865:4264..4634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10865 4265..4634 +
1695995608.4853733-UTR-E-fasciculatus_F_contig10865:4264..46341695995608.4853733-UTR-E-fasciculatus_F_contig10865:4264..4634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10865 4265..4634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.8920665-CDS-E-fasciculatus_F_contig10865:4021..42641622927586.8920665-CDS-E-fasciculatus_F_contig10865:4021..4264Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10865 4022..4264 +
1695995608.472076-CDS-E-fasciculatus_F_contig10865:4021..42641695995608.472076-CDS-E-fasciculatus_F_contig10865:4021..4264Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10865 4022..4264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10865.700.1

>prot_E-fasciculatus_F_contig10865.700.1 ID=prot_E-fasciculatus_F_contig10865.700.1|Name=mRNA_E-fasciculatus_F_contig10865.700.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=81bp
MDDCMTSIKSRVSYIRISGCGQKTPAAESKTLVEVIWKLPRQSSARFRRR
ASETMCRVMRGDPDLVRDIEGESNHPICFA*
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mRNA from alignment at E-fasciculatus_F_contig10865:3850..4634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10865.700.1 ID=mRNA_E-fasciculatus_F_contig10865.700.1|Name=mRNA_E-fasciculatus_F_contig10865.700.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=785bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10865:3850..4634+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGATTGACGAGGTCAGGAAATTGCTGTCGGAAGCAAGTGATGATTTTCT GTCAGCATGTGCTGTATGCGTTGTCGCGATTCCATCCAGAAATTCTTCGA ATGATGTGGAATAGTCCATCTATGTAGCTGAAGCGAAGGCTGCTGAATAC TGTCTTGACGCGCGTTTTCGCGATGGATGATTGTATGACATCGATCAAGT CCCGTGTATCGTACATCCGAATCAGCGGGTGTGGGCAAAAAACGCCGGCT GCGGAATCTAAAACTCTTGTGGAAGTAATTTGGAAGTTGCCTAGGCAGTC TTCAGCGAGGTTCCGTCGTAGAGCGTCGGAAACAATGTGTCGTGTGATGA GGGGCGATCCAGATTTGGTCCGAGATATCGAGGGGGAGTCGAATCATCCA ATATGCTTTGCTTAATCCGTTCGAGTACAAGGAGGTCGAGAGGTCGAACG AACATGGTCAAGAAGTCTCTCGTACGTGTCACTCTTGCCTTTACTGTTCA CGGAGGAAAACAAGCAAGAACACCTTCGGGAAAAATCGATGTACTCAGCG GTACCGAGGTGATCGAAGTGAAGCATTGCAGCGAGTAGAAGCACGGGCTC GGGCAGATCTTCGCTTGCCAGTTATACTTCCCTCTTTAGACCAAGCGTCT AGACCTCTTCGCATACACAGCCGACGTCGACAAATAAGTGCAAATATGTT GCGTTAGCCAAGTAACAGCGGATTATCCTAATTGAAACGGATTTATAGGT GAGAACGAAAATCACCCGGATGACACAACCCAAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10865:3850..4634+

>mRNA_E-fasciculatus_F_contig10865.700.1 ID=mRNA_E-fasciculatus_F_contig10865.700.1|Name=mRNA_E-fasciculatus_F_contig10865.700.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10865:3850..4634+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATGATTGTATGACATCGATCAAGTCCCGTGTATCGTACATCCGAAT
CAGCGGGTGTGGGCAAAAAACGCCGGCTGCGGAATCTAAAACTCTTGTGG
AAGTAATTTGGAAGTTGCCTAGGCAGTCTTCAGCGAGGTTCCGTCGTAGA
GCGTCGGAAACAATGTGTCGTGTGATGAGGGGCGATCCAGATTTGGTCCG
AGATATCGAGGGGGAGTCGAATCATCCAATATGCTTTGCTTAAATGGATG
ATTGTATGACATCGATCAAGTCCCGTGTATCGTACATCCGAATCAGCGGG
TGTGGGCAAAAAACGCCGGCTGCGGAATCTAAAACTCTTGTGGAAGTAAT
TTGGAAGTTGCCTAGGCAGTCTTCAGCGAGGTTCCGTCGTAGAGCGTCGG
AAACAATGTGTCGTGTGATGAGGGGCGATCCAGATTTGGTCCGAGATATC
GAGGGGGAGTCGAATCATCCAATATGCTTTGCTTAA
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