mRNA_E-fasciculatus_F_contig10865.700.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.190e-17 Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 2
Query: 152 VLTRVFAMDDCMTSIKSRVSYIRISGCGQKTPAAESKTLVEVIWKLPRQSSARFRRRASETMCRVMRGDPDLVRDIEGESNHPICFA*SVRVQGGREVERTWSRSLSY 475
+L RV DD SIKSRVSYI+I G G K+P + TLVE+IW LP SS FRR+++ET+CRVM GD L R IE + C V+GG +++ R + Y
Sbjct: 172 MLKRVLERDDREPSIKSRVSYIKIDGSGNKSPVTDFNTLVEIIWMLPTGSSREFRRKSAETICRVMGGDLSLCRQIEQNALGWNC------VEGGEAIQQALLRPVKY 273
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 3.590e-14 Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 445 RTNMVKKSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAYTADV 678
++ VK+ VR LA V G + TP+G IDVLSGTEVIEVK+ + KHGLGQ+ A + P KRL LFA+ +V
Sbjct: 46 KSTSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFAHAGEV 123
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 6.760e-11 Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 448 TNMVKKSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAYT 669
T V++ +VR LAF V G + TPSG IDVLS TEVIEVK+ K GLGQ+ Q ++P ++RL LFA++
Sbjct: 713 TERVRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFAHS 786
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 2.530e-10 Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 457 VKKSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFA 663
V++ VR LA V G + TP G IDVLS TEVIEVKH + KHGLGQ+ + Q ++P KRL LFA
Sbjct: 51 VREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHYPHLDKRLHLFA 119
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 1.370e-9 Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 457 VKKSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAYTADVD 681
VK+S VR LA V G + TP G IDVLS TEVIEVK+ + + LGQ+ A Q Y+P KR+ LFA T D
Sbjct: 204 VKESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVLAYQAYYPGLAKRVHLFAQTGKKD 278
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: B5LW94_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC) HSP 1 Score: 67.8 bits (164), Expect = 2.290e-9 Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 463 KSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAYTADV 678
++++R LA ++ G + RTP G+IDVL+ TEVIEVKH HG GQ+ Y PL KRL LFA DV
Sbjct: 290 EAVIRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVMGYGEYHPLLKKRLHLFALIEDV 361
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: A0A835YW01_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW01_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 2.500e-8 Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 457 VKKSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAY 666
V++ VR LA + G + ++P+G DV++ TEVIEVK C KH LGQ+ A + +KR+ LFAY
Sbjct: 57 VRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFAY 126
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: UPI0012E8E8BA (hypothetical protein n=1 Tax=Phormidesmis priestleyi TaxID=268141 RepID=UPI0012E8E8BA) HSP 1 Score: 59.7 bits (143), Expect = 1.020e-7 Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 436 SRGRTNM---VKKSLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAYTADVDK*V--QIC 699
SRGR+ + + R LA T+ G + TP+G++D+++ TE+IEV+ + KH LGQI A Y+P KR+ L+ +VD V QIC
Sbjct: 28 SRGRSRKGAHKSEGMYRDQLARTLSGVTEVTTPTGRVDIVTRTEIIEVEAAARWKHALGQILAYCYYYPSHQKRIHLYR---EVDPTVLDQIC 117
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: A0A6H5JDC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC2_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 1.620e-7 Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 487 AFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAY 666
A TV G + TP G IDVLS TEVIE+K+ + KH LGQ+ L++P KRL LFA+
Sbjct: 239 AETVDGQTEVETPVGIIDVLSKTEVIEMKYNKKWKHALGQVLDYHLFYPRLAKRLHLFAH 298
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Match: UPI001D2F14B2 (hypothetical protein n=1 Tax=Waterburya agarophytonicola TaxID=2886916 RepID=UPI001D2F14B2) HSP 1 Score: 56.2 bits (134), Expect = 2.900e-6 Identity = 30/84 (35.71%), Postives = 45/84 (53.57%), Query Frame = 1
Query: 445 RTNMVKK----SLVRVTLAFTVHGGKQARTPSGKIDVLSGTEVIEVKHCSE*KHGLGQIFACQLYFPL*TKRLDLFAYTADVDK 684
R N KK S R LA +++G + R PSG+ID+L+ ++IEVKH + LGQ+ ++P KR+ LF + K
Sbjct: 53 RANKPKKKRNESYYRDKLAKSLNGQTEVRVPSGRIDILTSNQIIEVKHIKKWNAALGQVITYGYHYPNHQKRIHLFGVENNSSK 136 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10865.700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10865.700.1 >prot_E-fasciculatus_F_contig10865.700.1 ID=prot_E-fasciculatus_F_contig10865.700.1|Name=mRNA_E-fasciculatus_F_contig10865.700.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=81bp MDDCMTSIKSRVSYIRISGCGQKTPAAESKTLVEVIWKLPRQSSARFRRRback to top mRNA from alignment at E-fasciculatus_F_contig10865:3850..4634+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10865.700.1 ID=mRNA_E-fasciculatus_F_contig10865.700.1|Name=mRNA_E-fasciculatus_F_contig10865.700.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=785bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10865:3850..4634+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10865:3850..4634+ >mRNA_E-fasciculatus_F_contig10865.700.1 ID=mRNA_E-fasciculatus_F_contig10865.700.1|Name=mRNA_E-fasciculatus_F_contig10865.700.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10865:3850..4634+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |