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Homology
BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Match: D8LHD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD3_ECTSI) HSP 1 Score: 143 bits (360), Expect = 5.180e-35 Identity = 90/186 (48.39%), Postives = 96/186 (51.61%), Query Frame = 1 Query: 262 PPPFDISSTGSWAGWGVHLKTFLQPRRVAPALVMRAAVAATRAAAVVAPATGLALPP-RRR*LFWMTRTCSTAARSFRLAGCCVRPLRNTLSWAAAXXXXXXXXXXXGPRESAGAGQPRARW*ARRHLRSRARTGMGGGLPLGSVLLDTPRPFSAQGSGXXXXXXXXXMVFMGNRSGDDNLTTEDP 816
P FD STGSW G G HLKTFL PRR PA+V+RAAVAATR AAVV T LA P RRR L WMT+TCS A RSF L+GCCVRPL W GGGL LGSVLLDTP P Q SG M MG SGD++LTTEDP
Sbjct: 52 PRHFDGGSTGSWTGRGAHLKTFLPPRRTEPAVVIRAAVAATRTAAVVVALTALAFPRGRRRRLSWMTQTCSVAVRSFPLSGCCVRPLSGEQEW-------------------------------------------GGGLQLGSVLLDTPGPSLQQRSGGGDGDVDGGMGLMGKTSGDESLTTEDP 194
BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Match: D8LHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD0_ECTSI) HSP 1 Score: 127 bits (318), Expect = 1.200e-29 Identity = 99/125 (79.20%), Postives = 104/125 (83.20%), Query Frame = 3 Query: 186 RLGCGLSVGTRVTSTPPSFPALHDTSTSLRHQLHRKLGGMGG-APEDLSSTAAGGTGV--GHEGXXXXXXXXXXXXXXXXXXXXXXXXXTLLDDPDLQHCSPVVSTSGVLRPTPQEHLVVGGSCG 551
R GCG S+GTRV S PPS PALHD ST+ RHQLHRK GGMGG APEDLSSTAAGGTGV G +GXXXXXXXXXXXXXXXXXXXXXXXXX L DDP LQ+ SP VST+GVLRPTPQEH VV G G
Sbjct: 15 RSGCGPSIGTRVASAPPSSPALHDASTTQRHQLHRKRGGMGGGAPEDLSSTAAGGTGVSLGRQGXXXXXXXXXXXXXXXXXXXXXXXXXXLPDDPGLQYRSPAVSTNGVLRPTPQEHFVVDGRGG 139
BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 4.790e-16 Identity = 62/94 (65.96%), Postives = 66/94 (70.21%), Query Frame = 3 Query: 246 ALHDTSTSLRHQLHRKLGGMGGAPEDLSSTAA-GGTGVGHEGXXXXXXXXXXXXXXXXXXXXXXXXXTLLDDPDLQHCS-PVVSTSGVLRPTPQ 521
ALHD S SLRHQLHRKLGGMGG PED SS AA GG+GVG+EGXXXXXX +LLDDPDLQ+ S PVVST GVLRPTPQ
Sbjct: 176 ALHDASASLRHQLHRKLGGMGGVPEDFSSAAAAGGSGVGYEGXXXXXXAVGDGPGGTAATTA-----SLLDDPDLQYSSSPVVSTGGVLRPTPQ 264
BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Match: A0A6H5KJQ4_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ4_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 9.470e-13 Identity = 76/101 (75.25%), Postives = 78/101 (77.23%), Query Frame = 3 Query: 246 ALHDTSTSLRHQLHRKLGGMGGAPEDLSSTAAGGTGVGHEGXXXXXXXXXXXXXXXXXXXXXXXXXTLLDDPDLQHCS-PVVSTSGVLRPTPQEHLVVGGS 545
ALHD S SLRHQLHRKLGGMGG ED SS XXXXXXXXXXXXXXXXXXXXXXXXX LLDDPDLQ+ S PVVST GVLRPTPQEH +V GS
Sbjct: 18 ALHDASASLRHQLHRKLGGMGGVREDFSSAXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDDPDLQYSSSPVVSTGGVLRPTPQEHFLVAGS 114
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 93.2 |
Seed ortholog evalue | 1.9e-16 |
Seed eggNOG ortholog | 2880.D8LHJ2 |
EggNOG free text desc. | phosphate ion transport |
EggNOG OGs | COG5409@1,KOG1162@2759 |
COG Functional cat. | T |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 1472 |
Cds size | 786 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10053.66.1 >prot_E-fasciculatus_F_contig10053.66.1 ID=prot_E-fasciculatus_F_contig10053.66.1|Name=mRNA_E-fasciculatus_F_contig10053.66.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=262bp
MIYQTVDCHVHASCFRLGCGLSVGTRVTSTPPSFPALHDTSTSLRHQLHR KLGGMGGAPEDLSSTAAGGTGVGHEGGGGGNKSSSSGGAGDGPGVTTTTT MTLLDDPDLQHCSPVVSTSGVLRPTPQEHLVVGGSCGSSGGNSSSSGATR IRGRRSASSAMVGTTSSSQQGEDRNGGGAPAGFRPPRHPPTLLCAGERWW WWRRGRRHGLHGQQERRRQLDHRRPKREPWSSCTTPATGCCRSRWAKPVL LCCAACSSWHG* back to topmRNA from alignment at E-fasciculatus_F_contig10053:181..3059- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10053.66.1 ID=mRNA_E-fasciculatus_F_contig10053.66.1|Name=mRNA_E-fasciculatus_F_contig10053.66.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2879bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10053:181..3059- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ACGATCGCAAAGCATCCGCAGCACAGAGACCTTCGGGAACCTCGGTGGTT
TCTGTGGCATGCATGGTGGGCCGAATGGTGTAGCTGGGGGAGGTGTCAGT
GATGACCGAGAAGCAGGGACGGAGGTGAGAAGCGAGGTGCATGATTTATC
AGACCGTCGATTGCCGCTTCCCACTGCAAGTACATCATGAACTGCTGATT
GGGATGCTACACTGATGCTCAATGGATGGTACCCCCGCTTGCACAGCTAG
CTAGCTACCGACCGGAGAGAGGAGGAACCTGGGACAACGTTGTCGCAACC
CAACGAACTGCTGTGCAGGGCTATAGTTGAAATGCTATGTCACGTTGCGT
ACAGCAGTTTGAGGGAGAACAGCACACACATGTCGACTGCTGCAGTCTAA
GGGTTCGACAAAGGAACAAGAAACTTCGGCAAGTTGGTTCCACCCCAAAG
AGCGCATAGCATATGTACCTGCGTTAGTCTACGTGTAGCTGTCGTTCGGA
ACAACCGGATGTTGGAAAAGCCCCACCAATCCAACCTTGTGCAGAGTTCG
CACGTTTGGATTTGAGATGTAGATACGTATGAATAGCCGGAACAAACCGG
AGAGTTTTGCGGGTACCCCACCACGCGGTTCTATCCGTGGGGCTGAGGAC
CCCGCCTGTGCAGCTGTTGTTGAGGTGAAACGAGCGCTTTACTCTTATCC
CGCCCGCCCCACAAGCCCGTCACCTATTGTAGATGTTCACGCTTCATGCT
TCCGCCTGCTTTGACCAACAATACTTGGTATGCTCAATTTTAGTCGACCC
CGAAACGCTCCCTACGCCGTACCGTGTTGCTGCTGTAGCGACGCCCACGT
CTTCTCCCACGCGCGCATCTAGCTTTGTCAAATGTTGGTCCTAAGAAAAG
GAGGATGGCGGATGGAAAGGAACATATTCTTGCGTCACTTACTCCTGTAG
TGGATTACTTCGTCAGGTTGGCACTTTGGCGTGCAACAAGCACTAAGGAG
GACCTGCTCCAATTGACCCCCACCAAAGTTCCCGCTGACAACAAACATGA
TATACTGCTTGTTCTATATAGACAGGAGTGAACCTGAGTAGCACATCAAA
TTCATACCAAGCAAATATCAGCAATGTTGAGTTTTTTCTCGTCCGCAAGT
ACAGACAGCAAATGTCGCGCCTCTAACCCCCACCGCTATGGGAATGCCTC
CCCCCGCCCATACAGGAGCTGAAGCGGATGTGGGCTTTCTGTCGGAACGA
GAGTGACAAGTACGCCTCCAAGCTTTCCGGCCCTCCACGACACTTCCACC
TCCCTTCGACATCAGCTCCACCGGAAGCTGGGCGGGATGGGGGGTGCACC
TGAAGACCTTTCTTCAACCGCGGCGGGTGGCACCGGCGTTGGTCATGAGG
GCGGCGGTGGCGGCAACAAGAGCAGCAGCAGTGGTGGCGCCGGCGACGGG
CCTGGCGTTACCACCACGACGACGATGACTCTTCTGGATGACCCGGACCT
GCAGCACTGCAGCCCGGTCGTTTCGACTAGCGGGGTGCTGCGTCCGACCC
CTCAGGTGGGATTGGGTTGGGCTGTGTGTGTGTTGGATGTCTTCTTTGAA
GGAAATTGGACGACAATCGGGTACAGCCTCCACGTGACAGATGTACCCGC
GAAAGGAGATGAATATTTAGTGTTTTACATGCGTGGTTCCACACAATCGT
GTCGACACGCGGACCGACCGTGTTTTCCTATCCCCTCCGTCCTCCCCCGT
CCCCACTTCAGCATCTGCCCTACATTGGCTTGGGTAACCCCCCTTCCCCC
GCGCGCGCTCGTCTAAACGAATAATGTTCTGTGCGCGCTTTTCTCAACCA
GGTAAAAAGTCATTTTGGACCGTTTCCCACCACCGCCGACTCAGCTATCA
ACACAATGACTGAACGACCGCAAAACAGGAACACCTTGTCGTGGGCGGCA
GCTGCGGCAGCAGCGGCGGCAACAGCAGCAGCAGCGGGGCCACGAGAATC
CGCGGGCGCAGGTCAGCCTCGAGCGCGATGGTAGGCACGACGTCATCTTC
GCAGCAGGGCGAGGACAGGAATGGGGGGGGGGCTCCCGCTGGGTTCCGTC
CTCCTCGACACCCCCCGACCCTTCTCTGCGCAGGGGAGCGGTGGTGGTGG
TGGCGCCGTGGGCGGCGGCATGGTCTTCATGGGCAACAGGAGCGGCGACG
ACAACTTGACCACCGAAGACCCAAGAGAGAGCCATGGTCGAGCTGTACGA
CACCTGCCACCGGCTGCTGTCGTTCAAGGTGGGCGAAGCCGGTGTTGCTT
TGTTGTGCTGCTTGTTCTAGTTGGCACGGTTGACGGCGCATTATACTCGT
CGAGGCGGTATGAGGCTCCAAACCGTGAGAGACCCGCTTCACACGACTGG
GTGCTGGTTATTTTTTCCCCGCTTTGGGTGAGGTAGTGTTGGAACACCGC
TGTCCTACAGTACGTCCTCAAGTATATTCTGTGAGTGTGTTGTAGCTTCC
CCTACGGTGCGTAAATGAAAGACTTTGTGTTACGGGCCGTTCCATTCAGC
TTGCCCCGAAAAGTGTTTGGGGGGGGGCGTGATGCTGAGCAGCCTCCCCT
GGGTTGGGAACATGCCTCAGACTGATGCGCTGCCGTGTTGCTCCATCTAG
CATTTCTTGTGTGCGGCGCTCGTGTCACGTTGCAACACACACCCGAGAAG
ACTGTTTTGCGTTTTATTTGTTTAGCTGATATAATGCTGCATCTGTATTG
CGACACAGAGTTCTTCTCTTCTCCCCTCTGCTCCCCCCGAAAAACAAAAA
ATGATATGCTTGCATACGCTCAACTACGACACCTTTGTGCGGCTGATGGA
ACTGCACTGCCGCCGTGCCGAGGCAGCGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10053:181..3059- >mRNA_E-fasciculatus_F_contig10053.66.1 ID=mRNA_E-fasciculatus_F_contig10053.66.1|Name=mRNA_E-fasciculatus_F_contig10053.66.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1572bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10053:181..3059- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGATTTATCAGACCGTCGATTGCCATGATTTATCAGACCGTCGATTGCC ATGTTCACGCTTCATGCTTCCGCCTATGTTCACGCTTCATGCTTCCGCCT CGGATGTGGGCTTTCTGTCGGAACGAGAGTGACAAGTACGCCTCCAAGCT TTCCGGCCCTCCACGACACTTCCACCTCCCTTCGACATCAGCTCCACCGG AAGCTGGGCGGGATGGGGGGTGCACCTGAAGACCTTTCTTCAACCGCGGC GGGTGGCACCGGCGTTGGTCATGAGGGCGGCGGTGGCGGCAACAAGAGCA GCAGCAGTGGTGGCGCCGGCGACGGGCCTGGCGTTACCACCACGACGACG ATGACTCTTCTGGATGACCCGGACCTGCAGCACTGCAGCCCGGTCGTTTC GACTAGCGGGGTGCTGCGTCCGACCCCTCAGCGGATGTGGGCTTTCTGTC GGAACGAGAGTGACAAGTACGCCTCCAAGCTTTCCGGCCCTCCACGACAC TTCCACCTCCCTTCGACATCAGCTCCACCGGAAGCTGGGCGGGATGGGGG GTGCACCTGAAGACCTTTCTTCAACCGCGGCGGGTGGCACCGGCGTTGGT CATGAGGGCGGCGGTGGCGGCAACAAGAGCAGCAGCAGTGGTGGCGCCGG CGACGGGCCTGGCGTTACCACCACGACGACGATGACTCTTCTGGATGACC CGGACCTGCAGCACTGCAGCCCGGTCGTTTCGACTAGCGGGGTGCTGCGT CCGACCCCTCAGGAACACCTTGTCGTGGGCGGCAGCTGCGGCAGCAGCGG CGGCAACAGCAGCAGCAGCGGGGCCACGAGAATCCGCGGGCGCAGGTCAG CCTCGAGCGCGATGGTAGGCACGACGTCATCTTCGCAGCAGGGCGAGGAC AGGAATGGGGGGGGGGCTCCCGCTGGGTTCCGTCCTCCTCGACACCCCCC GACCCTTCTCTGCGCAGGGGAGCGGTGGTGGTGGTGGCGCCGTGGGCGGC GGCATGGTCTTCATGGGCAACAGGAGCGGCGACGACAACTTGACCACCGA AGACCCAAGAGAGAGCCATGGTCGAGCTGTACGACACCTGCCACCGGCTG CTGTCGTTCAAGGTGGGCGAAGCCGGTGTTGCTTTGTTGTGCTGCTTGTT CTAGTTGGCACGGTTGAGAACACCTTGTCGTGGGCGGCAGCTGCGGCAGC AGCGGCGGCAACAGCAGCAGCAGCGGGGCCACGAGAATCCGCGGGCGCAG GTCAGCCTCGAGCGCGATGGTAGGCACGACGTCATCTTCGCAGCAGGGCG AGGACAGGAATGGGGGGGGGGCTCCCGCTGGGTTCCGTCCTCCTCGACAC CCCCCGACCCTTCTCTGCGCAGGGGAGCGGTGGTGGTGGTGGCGCCGTGG GCGGCGGCATGGTCTTCATGGGCAACAGGAGCGGCGACGACAACTTGACC ACCGAAGACCCAAGAGAGAGCCATGGTCGAGCTGTACGACACCTGCCACC GGCTGCTGTCGTTCAAGGTGGGCGAAGCCGGTGTTGCTTTGTTGTGCTGC TTGTTCTAGTTGGCACGGTTGA back to top
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