mRNA_E-fasciculatus_F_contig10053.66.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10053.66.1
Unique NamemRNA_E-fasciculatus_F_contig10053.66.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Match: D8LHD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD3_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 5.180e-35
Identity = 90/186 (48.39%), Postives = 96/186 (51.61%), Query Frame = 1 
Query:  262 PPPFDISSTGSWAGWGVHLKTFLQPRRVAPALVMRAAVAATRAAAVVAPATGLALPP-RRR*LFWMTRTCSTAARSFRLAGCCVRPLRNTLSWAAAXXXXXXXXXXXGPRESAGAGQPRARW*ARRHLRSRARTGMGGGLPLGSVLLDTPRPFSAQGSGXXXXXXXXXMVFMGNRSGDDNLTTEDP 816
            P  FD  STGSW G G HLKTFL PRR  PA+V+RAAVAATR AAVV   T LA P  RRR L WMT+TCS A RSF L+GCCVRPL     W                                           GGGL LGSVLLDTP P   Q SG         M  MG  SGD++LTTEDP
Sbjct:   52 PRHFDGGSTGSWTGRGAHLKTFLPPRRTEPAVVIRAAVAATRTAAVVVALTALAFPRGRRRRLSWMTQTCSVAVRSFPLSGCCVRPLSGEQEW-------------------------------------------GGGLQLGSVLLDTPGPSLQQRSGGGDGDVDGGMGLMGKTSGDESLTTEDP 194
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BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Match: D8LHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD0_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.200e-29
Identity = 99/125 (79.20%), Postives = 104/125 (83.20%), Query Frame = 3 
Query:  186 RLGCGLSVGTRVTSTPPSFPALHDTSTSLRHQLHRKLGGMGG-APEDLSSTAAGGTGV--GHEGXXXXXXXXXXXXXXXXXXXXXXXXXTLLDDPDLQHCSPVVSTSGVLRPTPQEHLVVGGSCG 551
            R GCG S+GTRV S PPS PALHD ST+ RHQLHRK GGMGG APEDLSSTAAGGTGV  G +GXXXXXXXXXXXXXXXXXXXXXXXXX L DDP LQ+ SP VST+GVLRPTPQEH VV G  G
Sbjct:   15 RSGCGPSIGTRVASAPPSSPALHDASTTQRHQLHRKRGGMGGGAPEDLSSTAAGGTGVSLGRQGXXXXXXXXXXXXXXXXXXXXXXXXXXLPDDPGLQYRSPAVSTNGVLRPTPQEHFVVDGRGG 139
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BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 4.790e-16
Identity = 62/94 (65.96%), Postives = 66/94 (70.21%), Query Frame = 3 
Query:  246 ALHDTSTSLRHQLHRKLGGMGGAPEDLSSTAA-GGTGVGHEGXXXXXXXXXXXXXXXXXXXXXXXXXTLLDDPDLQHCS-PVVSTSGVLRPTPQ 521
            ALHD S SLRHQLHRKLGGMGG PED SS AA GG+GVG+EGXXXXXX                   +LLDDPDLQ+ S PVVST GVLRPTPQ
Sbjct:  176 ALHDASASLRHQLHRKLGGMGGVPEDFSSAAAAGGSGVGYEGXXXXXXAVGDGPGGTAATTA-----SLLDDPDLQYSSSPVVSTGGVLRPTPQ 264
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BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Match: A0A6H5KJQ4_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 9.470e-13
Identity = 76/101 (75.25%), Postives = 78/101 (77.23%), Query Frame = 3 
Query:  246 ALHDTSTSLRHQLHRKLGGMGGAPEDLSSTAAGGTGVGHEGXXXXXXXXXXXXXXXXXXXXXXXXXTLLDDPDLQHCS-PVVSTSGVLRPTPQEHLVVGGS 545
            ALHD S SLRHQLHRKLGGMGG  ED SS            XXXXXXXXXXXXXXXXXXXXXXXXX LLDDPDLQ+ S PVVST GVLRPTPQEH +V GS
Sbjct:   18 ALHDASASLRHQLHRKLGGMGGVREDFSSAXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDDPDLQYSSSPVVSTGGVLRPTPQEHFLVAGS 114
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LHD3_ECTSI5.180e-3548.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHD0_ECTSI1.200e-2979.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHJ2_ECTSI4.790e-1665.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJQ4_9PHAE9.470e-1375.25EXS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10053contigE-fasciculatus_F_contig10053:181..3059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog2880.D8LHJ2
EggNOG free text desc.phosphate ion transport
EggNOG OGsCOG5409@1,KOG1162@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1472
Cds size786
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10053.66.1prot_E-fasciculatus_F_contig10053.66.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10053 727..2919 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927507.1322649-UTR-E-fasciculatus_F_contig10053:180..7261622927507.1322649-UTR-E-fasciculatus_F_contig10053:180..726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10053 181..726 -
1695995569.1096091-UTR-E-fasciculatus_F_contig10053:180..7261695995569.1096091-UTR-E-fasciculatus_F_contig10053:180..726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10053 181..726 -
1622927507.1932662-UTR-E-fasciculatus_F_contig10053:2919..30591622927507.1932662-UTR-E-fasciculatus_F_contig10053:2919..3059Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10053 2920..3059 -
1695995569.152829-UTR-E-fasciculatus_F_contig10053:2919..30591695995569.152829-UTR-E-fasciculatus_F_contig10053:2919..3059Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10053 2920..3059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927507.1447635-CDS-E-fasciculatus_F_contig10053:726..11311622927507.1447635-CDS-E-fasciculatus_F_contig10053:726..1131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10053 727..1131 -
1695995569.1201334-CDS-E-fasciculatus_F_contig10053:726..11311695995569.1201334-CDS-E-fasciculatus_F_contig10053:726..1131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10053 727..1131 -
1622927507.1547935-CDS-E-fasciculatus_F_contig10053:1504..18351622927507.1547935-CDS-E-fasciculatus_F_contig10053:1504..1835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10053 1505..1835 -
1695995569.1284337-CDS-E-fasciculatus_F_contig10053:1504..18351695995569.1284337-CDS-E-fasciculatus_F_contig10053:1504..1835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10053 1505..1835 -
1622927507.1644266-CDS-E-fasciculatus_F_contig10053:2302..23271622927507.1644266-CDS-E-fasciculatus_F_contig10053:2302..2327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10053 2303..2327 -
1695995569.1368384-CDS-E-fasciculatus_F_contig10053:2302..23271695995569.1368384-CDS-E-fasciculatus_F_contig10053:2302..2327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10053 2303..2327 -
1622927507.1758342-CDS-E-fasciculatus_F_contig10053:2894..29191622927507.1758342-CDS-E-fasciculatus_F_contig10053:2894..2919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10053 2895..2919 -
1695995569.1445203-CDS-E-fasciculatus_F_contig10053:2894..29191695995569.1445203-CDS-E-fasciculatus_F_contig10053:2894..2919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10053 2895..2919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10053.66.1

>prot_E-fasciculatus_F_contig10053.66.1 ID=prot_E-fasciculatus_F_contig10053.66.1|Name=mRNA_E-fasciculatus_F_contig10053.66.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=262bp
MIYQTVDCHVHASCFRLGCGLSVGTRVTSTPPSFPALHDTSTSLRHQLHR
KLGGMGGAPEDLSSTAAGGTGVGHEGGGGGNKSSSSGGAGDGPGVTTTTT
MTLLDDPDLQHCSPVVSTSGVLRPTPQEHLVVGGSCGSSGGNSSSSGATR
IRGRRSASSAMVGTTSSSQQGEDRNGGGAPAGFRPPRHPPTLLCAGERWW
WWRRGRRHGLHGQQERRRQLDHRRPKREPWSSCTTPATGCCRSRWAKPVL
LCCAACSSWHG*
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mRNA from alignment at E-fasciculatus_F_contig10053:181..3059-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10053.66.1 ID=mRNA_E-fasciculatus_F_contig10053.66.1|Name=mRNA_E-fasciculatus_F_contig10053.66.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2879bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10053:181..3059- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGATCGCAAAGCATCCGCAGCACAGAGACCTTCGGGAACCTCGGTGGTT
TCTGTGGCATGCATGGTGGGCCGAATGGTGTAGCTGGGGGAGGTGTCAGT
GATGACCGAGAAGCAGGGACGGAGGTGAGAAGCGAGGTGCATGATTTATC
AGACCGTCGATTGCCGCTTCCCACTGCAAGTACATCATGAACTGCTGATT
GGGATGCTACACTGATGCTCAATGGATGGTACCCCCGCTTGCACAGCTAG
CTAGCTACCGACCGGAGAGAGGAGGAACCTGGGACAACGTTGTCGCAACC
CAACGAACTGCTGTGCAGGGCTATAGTTGAAATGCTATGTCACGTTGCGT
ACAGCAGTTTGAGGGAGAACAGCACACACATGTCGACTGCTGCAGTCTAA
GGGTTCGACAAAGGAACAAGAAACTTCGGCAAGTTGGTTCCACCCCAAAG
AGCGCATAGCATATGTACCTGCGTTAGTCTACGTGTAGCTGTCGTTCGGA
ACAACCGGATGTTGGAAAAGCCCCACCAATCCAACCTTGTGCAGAGTTCG
CACGTTTGGATTTGAGATGTAGATACGTATGAATAGCCGGAACAAACCGG
AGAGTTTTGCGGGTACCCCACCACGCGGTTCTATCCGTGGGGCTGAGGAC
CCCGCCTGTGCAGCTGTTGTTGAGGTGAAACGAGCGCTTTACTCTTATCC
CGCCCGCCCCACAAGCCCGTCACCTATTGTAGATGTTCACGCTTCATGCT
TCCGCCTGCTTTGACCAACAATACTTGGTATGCTCAATTTTAGTCGACCC
CGAAACGCTCCCTACGCCGTACCGTGTTGCTGCTGTAGCGACGCCCACGT
CTTCTCCCACGCGCGCATCTAGCTTTGTCAAATGTTGGTCCTAAGAAAAG
GAGGATGGCGGATGGAAAGGAACATATTCTTGCGTCACTTACTCCTGTAG
TGGATTACTTCGTCAGGTTGGCACTTTGGCGTGCAACAAGCACTAAGGAG
GACCTGCTCCAATTGACCCCCACCAAAGTTCCCGCTGACAACAAACATGA
TATACTGCTTGTTCTATATAGACAGGAGTGAACCTGAGTAGCACATCAAA
TTCATACCAAGCAAATATCAGCAATGTTGAGTTTTTTCTCGTCCGCAAGT
ACAGACAGCAAATGTCGCGCCTCTAACCCCCACCGCTATGGGAATGCCTC
CCCCCGCCCATACAGGAGCTGAAGCGGATGTGGGCTTTCTGTCGGAACGA
GAGTGACAAGTACGCCTCCAAGCTTTCCGGCCCTCCACGACACTTCCACC
TCCCTTCGACATCAGCTCCACCGGAAGCTGGGCGGGATGGGGGGTGCACC
TGAAGACCTTTCTTCAACCGCGGCGGGTGGCACCGGCGTTGGTCATGAGG
GCGGCGGTGGCGGCAACAAGAGCAGCAGCAGTGGTGGCGCCGGCGACGGG
CCTGGCGTTACCACCACGACGACGATGACTCTTCTGGATGACCCGGACCT
GCAGCACTGCAGCCCGGTCGTTTCGACTAGCGGGGTGCTGCGTCCGACCC
CTCAGGTGGGATTGGGTTGGGCTGTGTGTGTGTTGGATGTCTTCTTTGAA
GGAAATTGGACGACAATCGGGTACAGCCTCCACGTGACAGATGTACCCGC
GAAAGGAGATGAATATTTAGTGTTTTACATGCGTGGTTCCACACAATCGT
GTCGACACGCGGACCGACCGTGTTTTCCTATCCCCTCCGTCCTCCCCCGT
CCCCACTTCAGCATCTGCCCTACATTGGCTTGGGTAACCCCCCTTCCCCC
GCGCGCGCTCGTCTAAACGAATAATGTTCTGTGCGCGCTTTTCTCAACCA
GGTAAAAAGTCATTTTGGACCGTTTCCCACCACCGCCGACTCAGCTATCA
ACACAATGACTGAACGACCGCAAAACAGGAACACCTTGTCGTGGGCGGCA
GCTGCGGCAGCAGCGGCGGCAACAGCAGCAGCAGCGGGGCCACGAGAATC
CGCGGGCGCAGGTCAGCCTCGAGCGCGATGGTAGGCACGACGTCATCTTC
GCAGCAGGGCGAGGACAGGAATGGGGGGGGGGCTCCCGCTGGGTTCCGTC
CTCCTCGACACCCCCCGACCCTTCTCTGCGCAGGGGAGCGGTGGTGGTGG
TGGCGCCGTGGGCGGCGGCATGGTCTTCATGGGCAACAGGAGCGGCGACG
ACAACTTGACCACCGAAGACCCAAGAGAGAGCCATGGTCGAGCTGTACGA
CACCTGCCACCGGCTGCTGTCGTTCAAGGTGGGCGAAGCCGGTGTTGCTT
TGTTGTGCTGCTTGTTCTAGTTGGCACGGTTGACGGCGCATTATACTCGT
CGAGGCGGTATGAGGCTCCAAACCGTGAGAGACCCGCTTCACACGACTGG
GTGCTGGTTATTTTTTCCCCGCTTTGGGTGAGGTAGTGTTGGAACACCGC
TGTCCTACAGTACGTCCTCAAGTATATTCTGTGAGTGTGTTGTAGCTTCC
CCTACGGTGCGTAAATGAAAGACTTTGTGTTACGGGCCGTTCCATTCAGC
TTGCCCCGAAAAGTGTTTGGGGGGGGGCGTGATGCTGAGCAGCCTCCCCT
GGGTTGGGAACATGCCTCAGACTGATGCGCTGCCGTGTTGCTCCATCTAG
CATTTCTTGTGTGCGGCGCTCGTGTCACGTTGCAACACACACCCGAGAAG
ACTGTTTTGCGTTTTATTTGTTTAGCTGATATAATGCTGCATCTGTATTG
CGACACAGAGTTCTTCTCTTCTCCCCTCTGCTCCCCCCGAAAAACAAAAA
ATGATATGCTTGCATACGCTCAACTACGACACCTTTGTGCGGCTGATGGA
ACTGCACTGCCGCCGTGCCGAGGCAGCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10053:181..3059-

>mRNA_E-fasciculatus_F_contig10053.66.1 ID=mRNA_E-fasciculatus_F_contig10053.66.1|Name=mRNA_E-fasciculatus_F_contig10053.66.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1572bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10053:181..3059- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATTTATCAGACCGTCGATTGCCATGATTTATCAGACCGTCGATTGCC
ATGTTCACGCTTCATGCTTCCGCCTATGTTCACGCTTCATGCTTCCGCCT
CGGATGTGGGCTTTCTGTCGGAACGAGAGTGACAAGTACGCCTCCAAGCT
TTCCGGCCCTCCACGACACTTCCACCTCCCTTCGACATCAGCTCCACCGG
AAGCTGGGCGGGATGGGGGGTGCACCTGAAGACCTTTCTTCAACCGCGGC
GGGTGGCACCGGCGTTGGTCATGAGGGCGGCGGTGGCGGCAACAAGAGCA
GCAGCAGTGGTGGCGCCGGCGACGGGCCTGGCGTTACCACCACGACGACG
ATGACTCTTCTGGATGACCCGGACCTGCAGCACTGCAGCCCGGTCGTTTC
GACTAGCGGGGTGCTGCGTCCGACCCCTCAGCGGATGTGGGCTTTCTGTC
GGAACGAGAGTGACAAGTACGCCTCCAAGCTTTCCGGCCCTCCACGACAC
TTCCACCTCCCTTCGACATCAGCTCCACCGGAAGCTGGGCGGGATGGGGG
GTGCACCTGAAGACCTTTCTTCAACCGCGGCGGGTGGCACCGGCGTTGGT
CATGAGGGCGGCGGTGGCGGCAACAAGAGCAGCAGCAGTGGTGGCGCCGG
CGACGGGCCTGGCGTTACCACCACGACGACGATGACTCTTCTGGATGACC
CGGACCTGCAGCACTGCAGCCCGGTCGTTTCGACTAGCGGGGTGCTGCGT
CCGACCCCTCAGGAACACCTTGTCGTGGGCGGCAGCTGCGGCAGCAGCGG
CGGCAACAGCAGCAGCAGCGGGGCCACGAGAATCCGCGGGCGCAGGTCAG
CCTCGAGCGCGATGGTAGGCACGACGTCATCTTCGCAGCAGGGCGAGGAC
AGGAATGGGGGGGGGGCTCCCGCTGGGTTCCGTCCTCCTCGACACCCCCC
GACCCTTCTCTGCGCAGGGGAGCGGTGGTGGTGGTGGCGCCGTGGGCGGC
GGCATGGTCTTCATGGGCAACAGGAGCGGCGACGACAACTTGACCACCGA
AGACCCAAGAGAGAGCCATGGTCGAGCTGTACGACACCTGCCACCGGCTG
CTGTCGTTCAAGGTGGGCGAAGCCGGTGTTGCTTTGTTGTGCTGCTTGTT
CTAGTTGGCACGGTTGAGAACACCTTGTCGTGGGCGGCAGCTGCGGCAGC
AGCGGCGGCAACAGCAGCAGCAGCGGGGCCACGAGAATCCGCGGGCGCAG
GTCAGCCTCGAGCGCGATGGTAGGCACGACGTCATCTTCGCAGCAGGGCG
AGGACAGGAATGGGGGGGGGGCTCCCGCTGGGTTCCGTCCTCCTCGACAC
CCCCCGACCCTTCTCTGCGCAGGGGAGCGGTGGTGGTGGTGGCGCCGTGG
GCGGCGGCATGGTCTTCATGGGCAACAGGAGCGGCGACGACAACTTGACC
ACCGAAGACCCAAGAGAGAGCCATGGTCGAGCTGTACGACACCTGCCACC
GGCTGCTGTCGTTCAAGGTGGGCGAAGCCGGTGTTGCTTTGTTGTGCTGC
TTGTTCTAGTTGGCACGGTTGA
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