mRNA_E-fasciculatus_F_contig10699.554.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10699.554.1
Unique NamemRNA_E-fasciculatus_F_contig10699.554.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10699.554.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.020e-30
Identity = 55/89 (61.80%), Postives = 71/89 (79.78%), Query Frame = 1
Query:    1 SGEAFDAVCDGCPQASCQDCVFKNDSLVPTCTEVPEHATSSGGSVAMETLSIDRGYWRATPTSTNILACYHADACLGGVTGTAGYCLEG 267
            S + F+A+C+GC + +C  CVF   SL P CTEV +H+TS GG+V ++TLSIDRG+WRA+ +ST +LACYHADACLGGVTG +GYC EG
Sbjct: 1006 SVDHFEAICNGC-ETTCDGCVFAEGSLAPICTEVMDHSTSDGGNVTLQTLSIDRGFWRASTSSTEVLACYHADACLGGVTGASGYCEEG 1093          
BLAST of mRNA_E-fasciculatus_F_contig10699.554.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.390e-30
Identity = 55/89 (61.80%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 SGEAFDAVCDGCPQASCQDCVFKNDSLVPTCTEVPEHATSSGGSVAMETLSIDRGYWRATPTSTNILACYHADACLGGVTGTAGYCLEG 267
            S + F+ +C GC + +C+ CVF    LVP CTEV EHATS GG++ +E LSID GYWRAT +S ++LACYHA+ACLGGVT T+GYCLEG
Sbjct: 1117 SDDPFEVMCSGC-EVTCEGCVFDEGLLVPACTEVMEHATSDGGNITLEALSIDSGYWRATESSEDVLACYHAEACLGGVTATSGYCLEG 1204          
BLAST of mRNA_E-fasciculatus_F_contig10699.554.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.890e-30
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 SGEAFDAVCDGCPQASCQDCVFKNDSLVPTCTEVPEHATSSGGSVAMETLSIDRGYWRATPTSTNILACYHADACLGGVTGTAGYCLEG 267
            S + F+AVC+GC Q +C  C F +  LVPTCT++ EH+TSS G   +ETLSI  GYWRAT + T +LACYHADACLGGVTGT+GYCLEG
Sbjct: 1107 SADLFEAVCNGC-QTACVGCAFADPLLVPTCTDLLEHSTSSDGRDTLETLSIQAGYWRATTSGTEVLACYHADACLGGVTGTSGYCLEG 1194          
BLAST of mRNA_E-fasciculatus_F_contig10699.554.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.770e-29
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 1
Query:   13 FDAVCDGCPQASCQDCVFKNDSLVPTCTEVPEHATSSGGSVAMETLSIDRGYWRATPTSTNILACYHADACLGGVTGTAGYCLE 264
            F+AVCDGC + +C  C F     VPTC++V +H TS+GG V +ETLSID GYWRAT +S  IL CY+ADACLGGVTGTAGYCLE
Sbjct:  927 FEAVCDGC-RVACDGCSFDEPPAVPTCSDVMDHGTSTGGKVTLETLSIDPGYWRATSSSKEILPCYNADACLGGVTGTAGYCLE 1009          
BLAST of mRNA_E-fasciculatus_F_contig10699.554.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.980e-28
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 SGEAFDAVCDGCPQASCQDCVFKNDSLVPTCTEVPEHATSSGGSVAMETLSIDRGYWRATPTSTNILACYHADACLGGVTGTAGYCLEG 267
            SG  ++A+CDGCP   C+ C F+   LVP C++  EH+ SSGG+V ++ L I+ GYWRATP+S N+L CY+ADACLGGVTG+  YCLEG
Sbjct:  473 SGTLYEAICDGCP-VECEGCSFEEPQLVPKCSDALEHSNSSGGTVTLDALVIEPGYWRATPSSENVLECYNADACLGGVTGSESYCLEG 560          
BLAST of mRNA_E-fasciculatus_F_contig10699.554.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.730e-28
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 1
Query:   13 FDAVCDGCPQASCQDCVFKNDSLVPTCTEVPEHATSSGGSVAMETLSIDRGYWRATPTSTNILACYHADACLGGVTGTAGYCLE 264
            F+AVCDGC + +C  C F     VPTC++V +H+TS GG+V +ETL ID GYWRAT +S  IL CY+ADACLGGVTGTAGYCLE
Sbjct:  987 FEAVCDGC-RVACDGCSFDEQPAVPTCSDVMDHSTSPGGNVTLETLLIDPGYWRATSSSKKILPCYNADACLGGVTGTAGYCLE 1069          
BLAST of mRNA_E-fasciculatus_F_contig10699.554.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.140e-26
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    1 SGEAFDAVCDGCPQASCQDCVFKNDSLVPTCTEVPEHATSSGGSVAMETLSIDRGYWRATPTSTNILACYHADACLGGVTGTAGYCLEG 267
            SG+ F+AVC GC    C  CVF+   + P C+EV  H+TS+GG+  ++ +SIDRGYWRAT  S  +L C+ ADACLGGVTGT+GYCLEG
Sbjct:  723 SGDPFEAVCAGC-DIVCDGCVFEQGLVGPACSEVMAHSTSTGGNTTLQEVSIDRGYWRATSVSEEVLECFQADACLGGVTGTSGYCLEG 810          
BLAST of mRNA_E-fasciculatus_F_contig10699.554.1 vs. uniprot
Match: A0A6H5JMC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC1_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 5.370e-26
Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    4 GEAFDAVCDGCPQASCQDCVFKNDSLVPTCTEVPEHATSSGGSVAMETLSIDRGYWRATPTSTNILACYHADACLGGVTGTAGYCLEG 267
            G+ +  VC GC +  C DC   ++S VPTCT  P+HA S+G +V  ETLSIDRGYWRATP+S NILAC++ADACLGG TG A YC EG
Sbjct:  662 GDRYSNVCSGCEE--CNDCDVADNSEVPTCTITPDHAQSTGSTV--ETLSIDRGYWRATPSSRNILACHNADACLGGETGAADYCAEG 745          
BLAST of mRNA_E-fasciculatus_F_contig10699.554.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 7.340e-26
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 SGEAFDAVCDGCPQASCQDCVFKNDSLVPTCTEVPEHATSSGGSVAMETLSIDRGYWRATPTSTNILACYHADACLGGVTGTAGYCLEG 267
            SG  ++A C GC + +C  C F+   + PTCT+V EH TS+GG+V +E L ++RGYWRA+P+S  + ACY++DACLGGVTG AGYCL+G
Sbjct:  753 SGNPYEAACGGC-ETACDGCFFE-PPVPPTCTDVMEHITSAGGTVTLEDLPVERGYWRASPSSEEVFACYNSDACLGGVTGRAGYCLKG 839          
BLAST of mRNA_E-fasciculatus_F_contig10699.554.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.370e-25
Identity = 54/86 (62.79%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   13 FDAVCDGCPQASCQDCVFKNDSL-VPTCTEVPEHATSSGGSVAMETLSIDRGYWRATPTSTNILACYHADACLGGVTGTAGYCLEG 267
            F+ +C GC + +C+ CV  ND L VP CTEV EHATS GG++ +E LSID GYWRAT +S +ILACYH +ACLGGVT T+GY LEG
Sbjct:  851 FEVMCSGC-EVTCKGCV--NDGLLVPACTEVMEHATSDGGNITLEALSIDSGYWRATESSEDILACYHPEACLGGVTATSGYRLEG 933          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10699.554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5K0E9_9PHAE1.020e-3061.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTI5_ECTSI1.390e-3061.80Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D8LSC0_ECTSI1.890e-3064.04Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7G2X5_ECTSI5.770e-2965.48Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G2Z8_ECTSI1.980e-2857.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7Z1_9PHAE2.730e-2864.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTL7_ECTSI1.140e-2657.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JMC1_9PHAE5.370e-2661.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G301_ECTSI7.340e-2655.06Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5K1P8_9PHAE1.370e-2562.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10699contigE-fasciculatus_F_contig10699:4490..4757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue7e-27
Seed eggNOG ortholog2880.D8LHQ8
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927568.8236547-CDS-E-fasciculatus_F_contig10699:4489..47561622927568.8236547-CDS-E-fasciculatus_F_contig10699:4489..4756Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10699 4490..4756 +
1695995599.857565-CDS-E-fasciculatus_F_contig10699:4489..47561695995599.857565-CDS-E-fasciculatus_F_contig10699:4489..4756Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10699 4490..4756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10699.554.1prot_E-fasciculatus_F_contig10699.554.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10699 4490..4756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10699.554.1

>prot_E-fasciculatus_F_contig10699.554.1 ID=prot_E-fasciculatus_F_contig10699.554.1|Name=mRNA_E-fasciculatus_F_contig10699.554.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp
SGEAFDAVCDGCPQASCQDCVFKNDSLVPTCTEVPEHATSSGGSVAMETL
SIDRGYWRATPTSTNILACYHADACLGGVTGTAGYCLEG
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mRNA from alignment at E-fasciculatus_F_contig10699:4490..4757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10699.554.1 ID=mRNA_E-fasciculatus_F_contig10699.554.1|Name=mRNA_E-fasciculatus_F_contig10699.554.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=268bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10699:4490..4757+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGGGAGAGGCCTTCGATGCCGTCTGCGATGGGTGCCCGCAGGCCTCCTG CCAGGACTGCGTCTTCAAGAACGATTCGCTAGTCCCGACGTGCACGGAGG TTCCGGAACACGCCACGAGCTCCGGCGGCAGCGTCGCCATGGAGACCCTG TCGATCGATCGGGGGTACTGGAGGGCCACCCCCACGAGCACGAACATTCT GGCGTGCTACCACGCCGACGCGTGTCTGGGGGGAGTGACGGGGACAGCCG GCTACTGCCTTGAGGGCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10699:4490..4757+

>mRNA_E-fasciculatus_F_contig10699.554.1 ID=mRNA_E-fasciculatus_F_contig10699.554.1|Name=mRNA_E-fasciculatus_F_contig10699.554.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10699:4490..4757+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGGGAGAGGCCTTCGATGCCGTCTGCGATGGGTGCCCGCAGGCCTCCTG
CCAGGACTGCGTCTTCAAGAACGATTCGCTAGTCCCGACGTGCACGGAGG
TTCCGGAACACGCCACGAGCTCCGGCGGCAGCGTCGCCATGGAGACCCTG
TCGATCGATCGGGGGTACTGGAGGGCCACCCCCACGAGCACGAACATTCT
GGCGTGCTACCACGCCGACGCGTGTCTGGGGGGAGTGACGGGGACAGCCG
GCTACTGCCTTGAGGGCTCGGGAGAGGCCTTCGATGCCGTCTGCGATGGG
TGCCCGCAGGCCTCCTGCCAGGACTGCGTCTTCAAGAACGATTCGCTAGT
CCCGACGTGCACGGAGGTTCCGGAACACGCCACGAGCTCCGGCGGCAGCG
TCGCCATGGAGACCCTGTCGATCGATCGGGGGTACTGGAGGGCCACCCCC
ACGAGCACGAACATTCTGGCGTGCTACCACGCCGACGCGTGTCTGGGGGG
AGTGACGGGGACAGCCGGCTACTGCCTTGAGGGC
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