mRNA_E-fasciculatus_F_contig10685.543.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10685.543.1
Unique NamemRNA_E-fasciculatus_F_contig10685.543.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10685.543.1 vs. uniprot
Match: D7FJQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ8_ECTSI)

HSP 1 Score: 558 bits (1439), Expect = 4.830e-196
Identity = 319/396 (80.56%), Postives = 331/396 (83.59%), Query Frame = 2 
Query:   62 TAAGRWAA-----AVTIALLRCGGAPPCHAFLASGGMVFAPQHSCRESRHCRATSMSAAADGLDLSNTAVAEVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKAGRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGAKNKIVPVTGFLHLTDIKRPYALEGTPGAQDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERVHKKGRRHAVGDIVEGYVREVHDSILLVDVMFAQLSVLRASKIRNSGEGEKFVNLSKETKPGDLITVRIEDIETSKRRGAEDDKATIDFVAWGGLGAAKDEKHQEGDGSSAP----AAAGQDFDIAAEIDALPAQQQTDAETPGPEADVS 1222
            T AGRWAA     AVTIALLRCGGAPPCHAFLASGGM FAPQHSCR SRHCRATSMSAA DGLDLSNTAVAEVDD                        XXX  XXXXXXXX        AKAGRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQG+KNKIVPVTGFLHLTDIKRPYALEGTPG +DCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRER+HKKGRRHAVGDIVEGYVREVH+S+LLVDVMFAQLSVLRAS IRNS EG+KFVNLS +TKPGDLITVRIEDIETSKRRGA+DDKATIDFVAWGGLGAAKDE HQ               GQ+ DIAAEIDALPAQQ+TDAE+ GPEADV+
Sbjct:    2 TTAGRWAATTAAAAVTIALLRCGGAPPCHAFLASGGMAFAPQHSCRGSRHCRATSMSAA-DGLDLSNTAVAEVDDDGSGATSRSNVAATAAGSTPGNTGXXXEKXXXXXXXXA-------AKAGRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSEEGQKFVNLSNKTKPGDLITVRIEDIETSKRRGAKDDKATIDFVAWGGLGAAKDENHQXXXXXXXXXXXATGVGQELDIAAEIDALPAQQRTDAESAGPEADVT 389
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10685.543.1 vs. uniprot
Match: A0A835YYC3_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.260e-16
Identity = 75/246 (30.49%), Postives = 104/246 (42.28%), Query Frame = 2 
Query:  428 IKELKTGDKVIGYVADTTNFAAFVDCSVVR-----------------------QGAKNKIVPVTGFLHLTDIKRPYALEGTPGAQDCE-----------VEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINK---------------------DKVLKLRDSKRQRS---RNSRRERVHKKGRRHAVGDIVEGYVREVHDSILLVDVMFAQLSVLRASKIRNSGEGEKFVNLSKETKPGDLITVRI 991
            + ELKTG ++IG V D + +AAF+DC V R                       +GA  K+ P  GFLH +DI R                           +KKG H++ YVKDVFPN+GR T++LDP I +                     +KV  +R  KR+ +   R SRR+           GD V G + +V +  LLVDV    L  +    IR +  GE   NL    +PG  +  R+
Sbjct:   94 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRV 339
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10685.543.1 vs. uniprot
Match: W7TQN5_9STRA (Nucleic acid-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQN5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.120e-14
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 2 
Query:  428 IKELKTGDKVIGYVADTTNFAAFVDCSVVRQGAKNKIVPVTGFLHLTDI-----------KRPYALEGTPGAQDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKR 754
            ++ L+ G ++ G V   T FAAF+D  VVR+G   K+V     LH  D+            +P  LE  P        +++GIH++ YVKDVFPN+GR +++LDP+I+K KV+  R  KR
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNV------IRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKR 218
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10685.543.1 vs. uniprot
Match: K8Z3D9_NANGC (UV excision repair protein RAD23 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3D9_NANGC)

HSP 1 Score: 83.2 bits (204), Expect = 2.610e-13
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 2 
Query:  428 IKELKTGDKVIGYVADTTNFAAFVDCSVVRQGAKNKIVPVTGFLHLTDI-----------KRPYALEGTPGAQDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKR 754
            ++ L+ G ++ G V   T FAAF+D  VVR+G   K+V     LH  D+            +P  LE  P        +++GIH++ YVKDVFPN+GR +++LDP+I+K KV+  R  KR
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNV------IRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKR 218
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10685.543.1 vs. uniprot
Match: A0A7S2UWN5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.580e-13
Identity = 56/173 (32.37%), Postives = 90/173 (52.02%), Query Frame = 2 
Query:  416 GRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGAKNKIVPVTGFLHLTDIKRPYALEGTPGAQDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQ--RSRNSRRERVHKKGRRHAV-----GDIVEGYVREVHDSILLVDVMFAQLSVLRASKI 913
            G  W+K LKTG    G V   TNF  F++C +VR G K  +  V G LH TD+     +      +  +V ++KG+ +  YVK VFP +GR +L++DP I + K+ + R  ++Q  + R S  E    +     V     GD+VEG  + V +  +  D+   + ++L+AS +
Sbjct:  137 GMVWLKTLKTGMPFYGGVKSVTNFGVFLECGIVRPGRKGTVTRVQGMLHKTDLAPSMKVPFQYRPKATKV-LEKGMTVKCYVKAVFPQSGRFSLTMDPTITRAKLREQRQRRKQGLKVRYSASEMKAWEPEVEEVKEANPGDVVEGTCKCVKNFGMYFDIGAEKSALLKASDL 308
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10685.543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJQ8_ECTSI4.830e-19680.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYC3_9STRA1.260e-1630.49S1 motif domain-containing protein n=1 Tax=Tribone... [more]
W7TQN5_9STRA6.120e-1438.33Nucleic acid-binding protein n=2 Tax=Monodopsidace... [more]
K8Z3D9_NANGC2.610e-1338.33UV excision repair protein RAD23 (Fragment) n=1 Ta... [more]
A0A7S2UWN5_9STRA5.580e-1332.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10685contigE-fasciculatus_F_contig10685:2..3497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionOB-fold nucleic-acid-binding protein
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-06_010560.1
Exons5
Model size1424
Cds size1173
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927567.1260958-UTR-E-fasciculatus_F_contig10685:1..1971622927567.1260958-UTR-E-fasciculatus_F_contig10685:1..197Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10685 2..197 -
1695995599.24024-UTR-E-fasciculatus_F_contig10685:1..1971695995599.24024-UTR-E-fasciculatus_F_contig10685:1..197Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10685 2..197 -
1622927567.2004516-UTR-E-fasciculatus_F_contig10685:3442..34971622927567.2004516-UTR-E-fasciculatus_F_contig10685:3442..3497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10685 3443..3497 -
1695995599.3092773-UTR-E-fasciculatus_F_contig10685:3442..34971695995599.3092773-UTR-E-fasciculatus_F_contig10685:3442..3497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10685 3443..3497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927567.1398988-CDS-E-fasciculatus_F_contig10685:197..3971622927567.1398988-CDS-E-fasciculatus_F_contig10685:197..397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10685 198..397 -
1695995599.2503629-CDS-E-fasciculatus_F_contig10685:197..3971695995599.2503629-CDS-E-fasciculatus_F_contig10685:197..397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10685 198..397 -
1622927567.1525955-CDS-E-fasciculatus_F_contig10685:873..10571622927567.1525955-CDS-E-fasciculatus_F_contig10685:873..1057Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10685 874..1057 -
1695995599.2603257-CDS-E-fasciculatus_F_contig10685:873..10571695995599.2603257-CDS-E-fasciculatus_F_contig10685:873..1057Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10685 874..1057 -
1622927567.1625817-CDS-E-fasciculatus_F_contig10685:1668..17851622927567.1625817-CDS-E-fasciculatus_F_contig10685:1668..1785Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10685 1669..1785 -
1695995599.2701094-CDS-E-fasciculatus_F_contig10685:1668..17851695995599.2701094-CDS-E-fasciculatus_F_contig10685:1668..1785Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10685 1669..1785 -
1622927567.1747742-CDS-E-fasciculatus_F_contig10685:2284..24821622927567.1747742-CDS-E-fasciculatus_F_contig10685:2284..2482Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10685 2285..2482 -
1695995599.2841947-CDS-E-fasciculatus_F_contig10685:2284..24821695995599.2841947-CDS-E-fasciculatus_F_contig10685:2284..2482Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10685 2285..2482 -
1622927567.1888945-CDS-E-fasciculatus_F_contig10685:2968..34421622927567.1888945-CDS-E-fasciculatus_F_contig10685:2968..3442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10685 2969..3442 -
1695995599.297963-CDS-E-fasciculatus_F_contig10685:2968..34421695995599.297963-CDS-E-fasciculatus_F_contig10685:2968..3442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10685 2969..3442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10685.543.1prot_E-fasciculatus_F_contig10685.543.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10685 198..3442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10685.543.1

>prot_E-fasciculatus_F_contig10685.543.1 ID=prot_E-fasciculatus_F_contig10685.543.1|Name=mRNA_E-fasciculatus_F_contig10685.543.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=391bp
MTTAAGRWAAAVTIALLRCGGAPPCHAFLASGGMVFAPQHSCRESRHCRA
TSMSAAADGLDLSNTAVAEVDDDDGDSGATSRSNVAAAAAAAGSTPGTNT
SGGATDKKKQRNTGGAAAKAGRRWIKELKTGDKVIGYVADTTNFAAFVDC
SVVRQGAKNKIVPVTGFLHLTDIKRPYALEGTPGAQDCEVEVKKGIHLTA
YVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERVHKKGRR
HAVGDIVEGYVREVHDSILLVDVMFAQLSVLRASKIRNSGEGEKFVNLSK
ETKPGDLITVRIEDIETSKRRGAEDDKATIDFVAWGGLGAAKDEKHQEGD
GSSAPAAAGQDFDIAAEIDALPAQQQTDAETPGPEADVST*
back to top

mRNA from alignment at E-fasciculatus_F_contig10685:2..3497-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10685.543.1 ID=mRNA_E-fasciculatus_F_contig10685.543.1|Name=mRNA_E-fasciculatus_F_contig10685.543.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3496bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10685:2..3497- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTCATCTCATTTCGCGTTCGGCCAGGGGATACGTTTGTCTACGAAATTC
CAAACATGACCACAGCAGCAGGCAGATGGGCGGCTGCTGTCACGATTGCT
CTTCTACGGTGCGGAGGAGCGCCGCCTTGCCACGCCTTCCTCGCATCAGG
CGGCATGGTGTTCGCGCCGCAACACTCATGCAGAGAAAGCAGACATTGCA
GGGCAACCAGCATGTCCGCAGCAGCAGACGGACTTGACCTGTCGAATACG
GCCGTTGCGGAGGTCGATGACGATGATGGCGATAGCGGTGCAACCAGCCG
TTCAAACGTCGCTGCCGCTGCCGCTGCCGCTGGTTCAACTCCCGGCACCA
ACACGAGCGGCGGGGCCACCGACAAAAAGAAGCAGCGGAATACTGGCGGT
GCTGCCGCCAAGGCGGGGCGGCGATGGATCAAGGAGTTGAAGACGGGGGA
TAAGGTCATCGGGTACGTGGCGGACACAACAAACTTCGCCGCGTTTGTGG
ACTGCAGCGTCGTGCGGCAGGGGGCGAAGGTGGGTGTCCATGTCCTGCCT
GGGGATGAGGGATGAGCCGGTGCGGGTAGTGTCGCGATTGGCTTGCCAAT
CAAGGTGCTACTATACGAGTGGTTGCTTCTTCCGATCACGTGAAGTGCAC
AAAGACGTGGGATTGTGGGTTACGTAAAGTACATCTCCGGCTTTCAAACG
AGGGAGCAGAATGGCCAAAGACGGGTTGCGATTTTACTCCTGCTCCGTAC
CATGGCCCTGCTAGGGCTCCTCCTGTTCGTCGTACGGTGACCCTGTTACC
TTTGTGCACGAGTGCTTTAGCGAAGCTGCCGACGCCTTGAGCGTAGGTCA
CACGAAGGATGGAACATGTTGTCTTTTGGCCCCCATCGCCCAGAATGATA
GCACTGCTGTATTTGCGTACCACCGACGTAACATGTGTACCCAGCATTAC
AACTTGGTTTGAACCTTAACCTTGCAACACATGTACTACCACTACCGCCC
TTCCTGCTGTTCCAGAACAAGATCGTCCCAGTGACGGGATTCCTCCACCT
GACGGATATCAAGCGCCCGTACGCGCTGGAGGGCACCCCCGGCGCCCAGG
ATTGCGAGGTGGAGGTGAAGAAGGGCATCCATCTCACGGCCTATGTCAAG
GACGTGTTTCCCAACGCGGGACGCATGACTCTGTCTCTCGACCCCAACAT
CAACAAGGACAAGGTACAGCAGTAGGTTTTACTGCTGTTTCGATGACACC
GTAGGACACCGTTTTTTTGTAGAGCCTGTTTCGCCTGACGACGCAGCTGC
CGTGTCTAGCTGGTGGTTTGATTATTGCAAGTTTTTGTGGCTGGCCGAAT
TTTTTCGGCCGAAATGTTGCACGTTTTCCTATCGTCAGTATTGCTCCCGT
GCTTTCTGTGGTTATCACGATACGCGGATGTAGGTAGGCTCGTGGCTGTT
CTACGTGCGTACGGGGTAGGCGATCTACCCCTAAGCGACAGCAGTAGTGA
CATCAGGCTTTCAAGACTTTCAAGACTTTTCTTGTGGGAAAATCGTCGTG
CCTGATTTCTTGTCATTGCTCGATACAACATAACCTACACGTAACGCGGT
GGCCCCCCGTCTGTCGATGGCAACCGCATCGTCCGAGAGCTCTGCCGCAA
ACGCACCCTATCGCTCCTCTTCCCACCACCGATTGGCTGACTCTGCGTAC
TGAATGATGCAGGTGCTTAAACTGCGCGACTCGAAGCGGCAGCGATCGCG
AAACAGCCGAAGAGAGCGCGTCCACAAGAAGGGACGACGGCACGCGGTGG
GGGACATCGTAGAGGGATACGTTCGCGAGGTACCACCCATTAGCTTTCCC
TGAATGATTTACTTCCGATGTTGTACGGCTGCAACGTACCTCTGCAATGT
CACCAGATGAATCGCTGTATGGTATCGGTCGTTTGGTTGCACCGCTTCCA
ATAAAGATGTGTCAGCTTTAGACCATCAAAGCCTAATCGTCTCGGTGCCG
TTTGTATCCACTATGTGGCTCCTGCAGATAAATGAGCAGCTTGTCGGTTA
TTCGCCCCACCAATTTAGCCTATCCCCCTGAGTCAGACGTAGTCAACGTG
TGTGGCACCCAAGTGAAAGTCTGTCTGTCGCGCGCCGGGTGTTCACCAGG
TGCCGGGTTGTCTTGGGCCACATTGTTATGTGTATGTGTCATGTACTACA
ATGTTTTCTTCGCCACTTCCCCTAGCGGTTGGCGGATGTTCTCTTGTGCT
TGGTTGTCTTGTGCACTCTAACGCCTGCTGAAAACCGCTCCTTTGTTCGG
TGTATGCGCGGCTTGAAGTTGTGTTGTGCCTTGTGGGGGGCTTCGTTCCT
CCTGCGTGTACCTCACTGCTCCTCCCGACGCATGCCGAGACCTACAACCT
CTTCGCTGTGCTTTCGCGTGTTCCTATTCTCTTGCCGCAGGTGCATGATT
CGATACTCCTGGTAGACGTGATGTTTGCTCAGTTGTCGGTGCTCCGCGCG
AGCAAGATCCGCAACTCGGGGGAAGGGGAAAAGTTCGTCAACTTGTCAAA
GGAGACCAAGCCCGGGGACTTGATCACCGTGCGCATCGAGGACATCGAAA
CGAGCAAGCGGAGGGGAGCGGAGGGTAAGAATCTCGATGGCAGTAGTAGC
CCCAACTATTGTCCATATTTTTTCGGGAATTAATTTACGCACGGTGTTGA
CGTCAAATTCCTACGAGCGAATTTGCGTGTCAGCGTTGCACCCCATCTGG
AGATCGTTGGTAAACGGGCGCAAGGCACGTCATGCAAGCTATCGACGCTT
TTTCCCGCGCCGTCGGTTGATTGCCGCGGTGTGTGGATTGAAGTGCCGTC
TGTCGGGGTCGTTTGTGAACTTCCGAGGGAAGGGGCCGAGTGACCCACCA
CCACGTGAATTCTGAACAGTGGTGCCCCTTTTTCAGGACGGTACAATCAT
TGAAGATTGACTGGGTCCATGTTGACCATTCCTCCTGAGCCACGTTGTCT
TTCTGCACGTGATCCCTCAAAGTCGCGTTTTGTCCGTCGTTCCTACCTCA
TTCCTTCTTCCCTGCCCGTTGTTCTTTTTTCGTGTCGTTTTTATCGGCAG
ACGACAAGGCAACGATCGACTTCGTGGCATGGGGAGGGCTCGGCGCGGCT
AAGGACGAGAAGCACCAAGAGGGCGACGGCTCCTCTGCGCCAGCAGCAGC
AGGGCAGGACTTCGACATTGCGGCGGAAATTGACGCTTTGCCCGCCCAAC
AACAAACCGATGCGGAAACCCCCGGGCCTGAGGCTGATGTATCGACGTAA
CGACACCGGTAGAGGAAGAGGAGGAGGAGGAAGGCCAAGGGGGAAAGCAG
GGAGAATCGCAGCACCCTCCAACCGAGCAAGGCTGTTTTACTGCGAACTG
CTGTGTTTCGGGGCGTGATAAACGTTGCAGACGAATCGCACACGTTGAAG
AGCTGCTGCGTCGGTGTTGGTTGGCATTGGGAGGGGTCGGATAGTC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10685:2..3497-

>mRNA_E-fasciculatus_F_contig10685.543.1 ID=mRNA_E-fasciculatus_F_contig10685.543.1|Name=mRNA_E-fasciculatus_F_contig10685.543.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2346bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10685:2..3497- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACCACAGCAGCAGGCAGATGGGCGGCTGCTGTCACGATTGCTCTTCT
ACGGTGCGGAGGAGCGCCGCCTTGCCACGCCTTCCTCGCATCAGGCGGCA
TGGTGTTCGCGCCGCAACACTCATGCAGAGAAAGCAGACATTGCAGGGCA
ACCAGCATGTCCGCAGCAGCAGACGGACTTGACCTGTCGAATACGGCCGT
TGCGGAGGTCGATGACGATGATGGCGATAGCGGTGCAACCAGCCGTTCAA
ACGTCGCTGCCGCTGCCGCTGCCGCTGGTTCAACTCCCGGCACCAACACG
AGCGGCGGGGCCACCGACAAAAAGAAGCAGCGGAATACTGGCGGTGCTGC
CGCCAAGGCGGGGCGGCGATGGATCAAGGAGTTGAAGACGGGGGATAAGG
TCATCGGGTACGTGGCGGACACAACAAACTTCGCCGCGTTTGTGGACTGC
AGCGTCGTGCGGCAGGGGGCGAAGATGACCACAGCAGCAGGCAGATGGGC
GGCTGCTGTCACGATTGCTCTTCTACGGTGCGGAGGAGCGCCGCCTTGCC
ACGCCTTCCTCGCATCAGGCGGCATGGTGTTCGCGCCGCAACACTCATGC
AGAGAAAGCAGACATTGCAGGGCAACCAGCATGTCCGCAGCAGCAGACGG
ACTTGACCTGTCGAATACGGCCGTTGCGGAGGTCGATGACGATGATGGCG
ATAGCGGTGCAACCAGCCGTTCAAACGTCGCTGCCGCTGCCGCTGCCGCT
GGTTCAACTCCCGGCACCAACACGAGCGGCGGGGCCACCGACAAAAAGAA
GCAGCGGAATACTGGCGGTGCTGCCGCCAAGGCGGGGCGGCGATGGATCA
AGGAGTTGAAGACGGGGGATAAGGTCATCGGGTACGTGGCGGACACAACA
AACTTCGCCGCGTTTGTGGACTGCAGCGTCGTGCGGCAGGGGGCGAAGAA
CAAGATCGTCCCAGTGACGGGATTCCTCCACCTGACGGATATCAAGCGCC
CGTACGCGCTGGAGGGCACCCCCGGCGCCCAGGATTGCGAGGTGGAGGTG
AAGAAGGGCATCCATCTCACGGCCTATGTCAAGGACGTGTTTCCCAACGC
GGGACGCATGACTCTGTCTCTCGACCCCAACATCAACAAGGACAAGAACA
AGATCGTCCCAGTGACGGGATTCCTCCACCTGACGGATATCAAGCGCCCG
TACGCGCTGGAGGGCACCCCCGGCGCCCAGGATTGCGAGGTGGAGGTGAA
GAAGGGCATCCATCTCACGGCCTATGTCAAGGACGTGTTTCCCAACGCGG
GACGCATGACTCTGTCTCTCGACCCCAACATCAACAAGGACAAGGTGCTT
AAACTGCGCGACTCGAAGCGGCAGCGATCGCGAAACAGCCGAAGAGAGCG
CGTCCACAAGAAGGGACGACGGCACGCGGTGGGGGACATCGTAGAGGGAT
ACGTTCGCGAGGTGCTTAAACTGCGCGACTCGAAGCGGCAGCGATCGCGA
AACAGCCGAAGAGAGCGCGTCCACAAGAAGGGACGACGGCACGCGGTGGG
GGACATCGTAGAGGGATACGTTCGCGAGGTGCATGATTCGATACTCCTGG
TAGACGTGATGTTTGCTCAGTTGTCGGTGCTCCGCGCGAGCAAGATCCGC
AACTCGGGGGAAGGGGAAAAGTTCGTCAACTTGTCAAAGGAGACCAAGCC
CGGGGACTTGATCACCGTGCGCATCGAGGACATCGAAACGAGCAAGCGGA
GGGGAGCGGAGGGTGCATGATTCGATACTCCTGGTAGACGTGATGTTTGC
TCAGTTGTCGGTGCTCCGCGCGAGCAAGATCCGCAACTCGGGGGAAGGGG
AAAAGTTCGTCAACTTGTCAAAGGAGACCAAGCCCGGGGACTTGATCACC
GTGCGCATCGAGGACATCGAAACGAGCAAGCGGAGGGGAGCGGAGGACGA
CAAGGCAACGATCGACTTCGTGGCATGGGGAGGGCTCGGCGCGGCTAAGG
ACGAGAAGCACCAAGAGGGCGACGGCTCCTCTGCGCCAGCAGCAGCAGGG
CAGGACTTCGACATTGCGGCGGAAATTGACGCTTTGCCCGCCCAACAACA
AACCGATGCGGAAACCCCCGGGCCTGAGGCTGATGTATCGACGTAAACGA
CAAGGCAACGATCGACTTCGTGGCATGGGGAGGGCTCGGCGCGGCTAAGG
ACGAGAAGCACCAAGAGGGCGACGGCTCCTCTGCGCCAGCAGCAGCAGGG
CAGGACTTCGACATTGCGGCGGAAATTGACGCTTTGCCCGCCCAACAACA
AACCGATGCGGAAACCCCCGGGCCTGAGGCTGATGTATCGACGTAA
back to top