prot_E-fasciculatus_F_contig10685.543.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig10685.543.1
Unique Nameprot_E-fasciculatus_F_contig10685.543.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length391
Homology
BLAST of mRNA_E-fasciculatus_F_contig10685.543.1 vs. uniprot
Match: D7FJQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ8_ECTSI)

HSP 1 Score: 556 bits (1432), Expect = 2.370e-196
Identity = 319/396 (80.56%), Postives = 331/396 (83.59%), Query Frame = 0
Query:    3 TAAGRWAA-----AVTIALLRCGGAPPCHAFLASGGMVFAPQHSCRESRHCRATSMSAAADGLDLSNTAVAEVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKAGRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGAKNKIVPVTGFLHLTDIKRPYALEGTPGAQDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERVHKKGRRHAVGDIVEGYVREVHDSILLVDVMFAQLSVLRASKIRNSGEGEKFVNLSKETKPGDLITVRIEDIETSKRRGAEDDKATIDFVAWGGLGAAKDEKHQEGDGSSAP----AAAGQDFDIAAEIDALPAQQQTDAETPGPEADVS 389
            T AGRWAA     AVTIALLRCGGAPPCHAFLASGGM FAPQHSCR SRHCRATSMSAA DGLDLSNTAVAEVDD                        XXX  XXXXXXXX        AKAGRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQG+KNKIVPVTGFLHLTDIKRPYALEGTPG +DCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRER+HKKGRRHAVGDIVEGYVREVH+S+LLVDVMFAQLSVLRAS IRNS EG+KFVNLS +TKPGDLITVRIEDIETSKRRGA+DDKATIDFVAWGGLGAAKDE HQ               GQ+ DIAAEIDALPAQQ+TDAE+ GPEADV+
Sbjct:    2 TTAGRWAATTAAAAVTIALLRCGGAPPCHAFLASGGMAFAPQHSCRGSRHCRATSMSAA-DGLDLSNTAVAEVDDDGSGATSRSNVAATAAGSTPGNTGXXXEKXXXXXXXXA-------AKAGRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSEEGQKFVNLSNKTKPGDLITVRIEDIETSKRRGAKDDKATIDFVAWGGLGAAKDENHQXXXXXXXXXXXATGVGQELDIAAEIDALPAQQRTDAESAGPEADVT 389          
BLAST of mRNA_E-fasciculatus_F_contig10685.543.1 vs. uniprot
Match: A0A835YYC3_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.170e-17
Identity = 75/246 (30.49%), Postives = 104/246 (42.28%), Query Frame = 0
Query:  125 IKELKTGDKVIGYVADTTNFAAFVDCSVVR-----------------------QGAKNKIVPVTGFLHLTDIKRPYALEGTPGAQDCE-----------VEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINK---------------------DKVLKLRDSKRQRS---RNSRRERVHKKGRRHAVGDIVEGYVREVHDSILLVDVMFAQLSVLRASKIRNSGEGEKFVNLSKETKPGDLITVRI 312
            + ELKTG ++IG V D + +AAF+DC V R                       +GA  K+ P  GFLH +DI R                           +KKG H++ YVKDVFPN+GR T++LDP I +                     +KV  +R  KR+ +   R SRR+           GD V G + +V +  LLVDV    L  +    IR +  GE   NL    +PG  +  R+
Sbjct:   94 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRV 339          
BLAST of mRNA_E-fasciculatus_F_contig10685.543.1 vs. uniprot
Match: W7TQN5_9STRA (Nucleic acid-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQN5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.550e-14
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 0
Query:  125 IKELKTGDKVIGYVADTTNFAAFVDCSVVRQGAKNKIVPVTGFLHLTDI-----------KRPYALEGTPGAQDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKR 233
            ++ L+ G ++ G V   T FAAF+D  VVR+G   K+V     LH  D+            +P  LE  P        +++GIH++ YVKDVFPN+GR +++LDP+I+K KV+  R  KR
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNV------IRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKR 218          
BLAST of mRNA_E-fasciculatus_F_contig10685.543.1 vs. uniprot
Match: K8Z3D9_NANGC (UV excision repair protein RAD23 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3D9_NANGC)

HSP 1 Score: 83.2 bits (204), Expect = 1.310e-13
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 0
Query:  125 IKELKTGDKVIGYVADTTNFAAFVDCSVVRQGAKNKIVPVTGFLHLTDI-----------KRPYALEGTPGAQDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKR 233
            ++ L+ G ++ G V   T FAAF+D  VVR+G   K+V     LH  D+            +P  LE  P        +++GIH++ YVKDVFPN+GR +++LDP+I+K KV+  R  KR
Sbjct:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNV------IRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKR 218          
BLAST of mRNA_E-fasciculatus_F_contig10685.543.1 vs. uniprot
Match: A0A7S2UWN5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.270e-13
Identity = 56/173 (32.37%), Postives = 90/173 (52.02%), Query Frame = 0
Query:  121 GRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGAKNKIVPVTGFLHLTDIKRPYALEGTPGAQDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQ--RSRNSRRERVHKKGRRHAV-----GDIVEGYVREVHDSILLVDVMFAQLSVLRASKI 286
            G  W+K LKTG    G V   TNF  F++C +VR G K  +  V G LH TD+     +      +  +V ++KG+ +  YVK VFP +GR +L++DP I + K+ + R  ++Q  + R S  E    +     V     GD+VEG  + V +  +  D+   + ++L+AS +
Sbjct:  137 GMVWLKTLKTGMPFYGGVKSVTNFGVFLECGIVRPGRKGTVTRVQGMLHKTDLAPSMKVPFQYRPKATKV-LEKGMTVKCYVKAVFPQSGRFSLTMDPTITRAKLREQRQRRKQGLKVRYSASEMKAWEPEVEEVKEANPGDVVEGTCKCVKNFGMYFDIGAEKSALLKASDL 308          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10685.543.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJQ8_ECTSI2.370e-19680.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYC3_9STRA6.170e-1730.49S1 motif domain-containing protein n=1 Tax=Tribone... [more]
W7TQN5_9STRA3.550e-1438.33Nucleic acid-binding protein n=2 Tax=Monodopsidace... [more]
K8Z3D9_NANGC1.310e-1338.33UV excision repair protein RAD23 (Fragment) n=1 Ta... [more]
A0A7S2UWN5_9STRA3.270e-1332.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 129..217
e-value: 7.3E-4
score: 28.8
coord: 252..333
e-value: 0.5
score: 19.4
NoneNo IPR availableGENE3D2.40.50.140coord: 122..222
e-value: 2.1E-7
score: 32.8
NoneNo IPR availableGENE3D2.40.50.140coord: 251..323
e-value: 3.3E-7
score: 32.3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..390
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.517
IPR003029S1 domainPROSITEPS50126S1coord: 254..327
score: 10.077
IPR003029S1 domainPROSITEPS50126S1coord: 131..217
score: 8.547
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 251..321
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 123..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10685contigE-fasciculatus_F_contig10685:198..3442 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10685.543.1mRNA_E-fasciculatus_F_contig10685.543.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig10685 2..3497 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig10685.543.1 ID=prot_E-fasciculatus_F_contig10685.543.1|Name=mRNA_E-fasciculatus_F_contig10685.543.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=391bp
MTTAAGRWAAAVTIALLRCGGAPPCHAFLASGGMVFAPQHSCRESRHCRA
TSMSAAADGLDLSNTAVAEVDDDDGDSGATSRSNVAAAAAAAGSTPGTNT
SGGATDKKKQRNTGGAAAKAGRRWIKELKTGDKVIGYVADTTNFAAFVDC
SVVRQGAKNKIVPVTGFLHLTDIKRPYALEGTPGAQDCEVEVKKGIHLTA
YVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERVHKKGRR
HAVGDIVEGYVREVHDSILLVDVMFAQLSVLRASKIRNSGEGEKFVNLSK
ETKPGDLITVRIEDIETSKRRGAEDDKATIDFVAWGGLGAAKDEKHQEGD
GSSAPAAAGQDFDIAAEIDALPAQQQTDAETPGPEADVST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR003029S1_domain
IPR022967S1_dom