mRNA_E-fasciculatus_F_contig10674.535.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10674.535.1
Unique NamemRNA_E-fasciculatus_F_contig10674.535.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10674.535.1 vs. uniprot
Match: D7G548_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G548_ECTSI)

HSP 1 Score: 488 bits (1257), Expect = 1.170e-166
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1
Query:    1 QITLALNRPDMAYSAADALASAMYDSMFDWLVGRVNFAVQIFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQK 705
            QITLALNRPDMAYSAADALASAMYDSMFDWLVGRVNFAVQIFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQK
Sbjct:  329 QITLALNRPDMAYSAADALASAMYDSMFDWLVGRVNFAVQIFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQK 563          
BLAST of mRNA_E-fasciculatus_F_contig10674.535.1 vs. uniprot
Match: A0A6H5KSK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK5_9PHAE)

HSP 1 Score: 489 bits (1259), Expect = 1.050e-160
Identity = 240/260 (92.31%), Postives = 243/260 (93.46%), Query Frame = 1
Query:    1 QITLALNRPDMAYSAADALASAMYDSMFDWLVGRVNFAVQ-----------------IFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQKAANTFSSK 729
            +ITLALNRPDMAYSAADALASAMYDSMFDWLVGRVNFAVQ                 IFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEK+PYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQKAANTF+SK
Sbjct:  428 EITLALNRPDMAYSAADALASAMYDSMFDWLVGRVNFAVQGEHSNKFIGVLDIFGFEIFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKRPYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQKAANTFNSK 687          
BLAST of mRNA_E-fasciculatus_F_contig10674.535.1 vs. uniprot
Match: A0A836C908_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C908_9STRA)

HSP 1 Score: 372 bits (954), Expect = 3.470e-116
Identity = 180/260 (69.23%), Postives = 206/260 (79.23%), Query Frame = 1
Query:    4 ITLALNRPDMAYSAADALASAMYDSMFDWLVGRVNFAV-----------------QIFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPA-GSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQKAANTFSSK 729
            +T ALNR D A  A DALA A YD MFDWLVGR+N AV                 +IF KNHFEQLCINYTNEKLQQHFN+HTFQEEETVY  E I FEHI+FIDNQPVVDLIEKKPYGLMPLLDEEVK+P+G D  WL KCK HNA+HP L    G NPNRF V HYAG+V Y+ GGFV TN+D+LFRDLYD++S +++ +T+++FPPKD+NPRR TTLG KFR+ALLDLM LVD CEPWYIRCIKPNDQKAANTF+++
Sbjct:  533 VTKALNRADQATLAVDALAKAAYDHMFDWLVGRINVAVSGATTNTFIGVLDIFGFEIFEKNHFEQLCINYTNEKLQQHFNRHTFQEEETVYRAEAIAFEHINFIDNQPVVDLIEKKPYGLMPLLDEEVKLPRGGDAAWLGKCKQHNAEHPALAGTPGGNPNRFTVRHYAGDVGYDCGGFVDTNRDNLFRDLYDIMSSSRAPITKAVFPPKDSNPRRTTTLGEKFRRALLDLMALVDACEPWYIRCIKPNDQKAANTFNAR 792          
BLAST of mRNA_E-fasciculatus_F_contig10674.535.1 vs. uniprot
Match: A0A7R9UA42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA42_9STRA)

HSP 1 Score: 277 bits (708), Expect = 2.600e-84
Identity = 140/255 (54.90%), Postives = 179/255 (70.20%), Query Frame = 1
Query:   16 LNRPDMAYSAADALASAMYDSMFDWLVGRVNFAVQ------------------IFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPA--GSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQKAANTF 720
            L++P  A  AADALA A++  +FDWLV R+N AVQ                  IF +N FEQLCIN+TNEKLQQHFN+ TF+EEE+VY +E IRF  + FIDNQP++DLIEKKP+GLM LLDEEV++P+GSD  W+ KC T +A +P  + A  G + + F + HYAG V Y   GF+  NKD L+R++YD++S A   +TR +FPPKD NPRR+ TLG KFR  L +LM +VD CEP+YIRCIKPN +K AN F
Sbjct:  443 LHKPADAVEAADALAKAIFGKLFDWLVLRINDAVQFQMDNSLFIGVLDIFGFEIFEQNSFEQLCINFTNEKLQQHFNRSTFKEEESVYQSEGIRFAKVPFIDNQPILDLIEKKPFGLMVLLDEEVRLPQGSDSRWIQKCTTKHASNPNWQEARRGQSADVFAIQHYAGNVQYSSLGFMEKNKDSLYRNMYDMMSAAPHPLTREVFPPKDANPRRVQTLGEKFRSQLRNLMTVVDRCEPYYIRCIKPNHEKKANMF 697          
BLAST of mRNA_E-fasciculatus_F_contig10674.535.1 vs. uniprot
Match: A0A7S1U0W2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0W2_9STRA)

HSP 1 Score: 261 bits (666), Expect = 3.190e-77
Identity = 134/255 (52.55%), Postives = 172/255 (67.45%), Query Frame = 1
Query:   16 LNRPDMAYSAADALASAMYDSMFDWLVGRVNFAV------------------QIFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPAGSNPNR--FVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQKAANTF 720
            L++P  A  AADALA A++ ++FDWLV R+N AV                  +IF  N FEQLCIN+TNEKLQQHFNK TF+EEE+VY +E I+++ + FIDNQP++D+IEKKP G++ LLDEE+++P+GSD  WLSKC T +A       A ++  R  F + HYAG V Y   GF+  NKD L+R++YD++S     +TR +FPP D NPRRL TLG KFR  L  LM  VD CEP YIRCIKPN +K AN F
Sbjct:  131 LHKPHDAVEAADALAKAIFGNLFDWLVKRINSAVDFTQANSLFIGVLDIFGFEIFETNSFEQLCINFTNEKLQQHFNKSTFKEEESVYQSEGIQYDKVPFIDNQPILDMIEKKPMGILILLDEEIRLPRGSDDRWLSKCGTRHAADANWIDAANDQARTMFTIQHYAGRVQYSSEGFMEKNKDALYRNMYDMMSRVPHPLTREVFPPMDANPRRLRTLGEKFRGQLKALMSTVDACEPHYIRCIKPNHKKKANMF 385          
BLAST of mRNA_E-fasciculatus_F_contig10674.535.1 vs. uniprot
Match: F0Y2B5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2B5_AURAN)

HSP 1 Score: 224 bits (572), Expect = 9.700e-65
Identity = 133/277 (48.01%), Postives = 164/277 (59.21%), Query Frame = 1
Query:    7 TLALNRPDMAYSAADALASAMYDSMFDWLVGRVNFAV-------------------QIFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDEEVKIPKGSDGGWLSKC-KTHNAQ---------HPCLRPAG----SNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVS---GAQSDVTRSLFPPKDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQKAANTFSSK 729
            TL+   P  A + A ALA A Y  +FDWLV R+N AV                   +IF  N FEQLCINYTNEKLQQHFN+HTF+EEE +Y +E I FE + FIDNQPV+DLIEKKP GL+  LD+ V  P+GSD  W+++C K+H A+         H   R  G     +   F V HYAG V Y I GF   NKD L R+LYDL+S    A   V + LFP    NPRR  T+  +FRK L  LM++VD  +P Y+RC+KPN QK A  F +K
Sbjct:  425 TLSPCAPAAAKAGARALAKAAYGRLFDWLVKRINVAVAQGGAAGGKFIGVLDIFGFEIFESNSFEQLCINYTNEKLQQHFNRHTFKEEENLYRSEGIDFEPVPFIDNQPVLDLIEKKPDGLLLALDDVVNAPQGSDAKWMARCEKSHAAKKEWVDVSEKHKGSRGRGVKQKGDEEFFTVRHYAGAVTYHIVGFCEKNKDPLGRNLYDLLSLKAPAFPLVGKELFPDLGRNPRRQPTIAGQFRKQLSALMKIVDAADPCYVRCVKPNQQKKARLFDAK 701          
BLAST of mRNA_E-fasciculatus_F_contig10674.535.1 vs. uniprot
Match: A0A7S4L0Q8_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4L0Q8_9EUKA)

HSP 1 Score: 223 bits (569), Expect = 2.980e-63
Identity = 111/245 (45.31%), Postives = 159/245 (64.90%), Query Frame = 1
Query:   49 DALASAMYDSMFDWLVGRVN--------------------FAVQIFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPP-KDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQKAANTF 720
            ++ +  +Y  +FDW+V +VN                    F  +IF  N FEQLCIN+ NEKLQQHFN+HTF+ EE +Y  EQI+F+H+ FIDNQPV+DLIE KP G++  LDEE+K+P+GSD  +L+K   H+  +P  +   ++ + F+V+HYAGEV Y+   F+  NKD L +DL+DL++ ++S   +SLFP    +   R  +LGF+FR+ L DLM+ ++  EP YIRC+KPND K A  F
Sbjct:  442 NSFSKKIYAHLFDWIVAKVNQGMAAPKGAVKAGQINVLDIFGFEIFEVNSFEQLCINFCNEKLQQHFNQHTFKLEEQLYRREQIKFDHVEFIDNQPVLDLIELKPKGILVTLDEEIKVPRGSDTTFLNKINKHHGANPHFKEIRTSKSEFMVIHYAGEVLYDSYTFLEKNKDTLTQDLFDLITSSRSSFLKSLFPDINQSGSDRKVSLGFQFRRQLDDLMKTLNQTEPHYIRCVKPNDDKCAGLF 686          
BLAST of mRNA_E-fasciculatus_F_contig10674.535.1 vs. uniprot
Match: A0A7S3YT57_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YT57_9EUKA)

HSP 1 Score: 221 bits (563), Expect = 1.930e-62
Identity = 118/250 (47.20%), Postives = 157/250 (62.80%), Query Frame = 1
Query:   34 AYSAADALASAMYDSMFDWLVGRVN-------------------FAVQIFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDEEVKIPKGSDGGWLSKC-KTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQKAANTFS 723
            A +A DALA  +Y+ MFDWLV R+N                   F  +IF  N FEQLCIN+TNEKLQQ FN+HTF+ EE +YS+E+I+++ + +IDNQPV+DLIEKKP G++P++DEE+++P+GSD  +++K  KTH             P  F+V HYAG+V YE  GF+  NKD L+ D YDL+S +       +FP  D    + TTLG KFRK L DLM  ++   P YIRCIKPN  KA   F+
Sbjct:  571 ASAARDALAKFIYERMFDWLVARINKSIGTGKFVQGKTIGILDIFGFEIFKTNSFEQLCINFTNEKLQQFFNQHTFKLEEALYSSEKIQYKKVAYIDNQPVLDLIEKKPKGVLPMIDEELRLPRGSDDTYVAKLLKTHAPNKNYFGKILKRPKNFIVRHYAGDVEYESHGFLEKNKDRLYEDAYDLLSKSSFKFLSKMFPDDDAKHSK-TTLGAKFRKQLNDLMRTLNATYPHYIRCIKPNSAKAPMQFN 819          
BLAST of mRNA_E-fasciculatus_F_contig10674.535.1 vs. uniprot
Match: A0A7S0DKF9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DKF9_9EUKA)

HSP 1 Score: 221 bits (562), Expect = 2.520e-62
Identity = 116/250 (46.40%), Postives = 159/250 (63.60%), Query Frame = 1
Query:   34 AYSAADALASAMYDSMFDWLVGRVN-------------------FAVQIFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDEEVKIPKGSDGGWLSKC-KTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPRRLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQKAANTFS 723
            A +A DAL+  +Y+ MFDWLV ++N                   F  +IF  N FEQLCIN+TNEKLQQ FN+HTF+ EE +Y  E+I ++ + +IDNQPV+DLIEKKP G++P++DEE+++PKGSD  ++ K  KTHN+           P  F+V+HYAG+V YE  GF+  NKD L+ D YDL+S +Q     ++FP  D    +  TLG KFR+ L DLM  ++   P YIRCIKPN +KA  +F+
Sbjct:  360 ATAARDALSKFIYERMFDWLVAKINKSIGTGNFVKGKTIGILDIFGFEIFKTNSFEQLCINFTNEKLQQFFNQHTFKLEEALYKAEKINYKKVAYIDNQPVLDLIEKKPKGILPMIDEELRLPKGSDDTYVQKLLKTHNSNKNYFAKVLKRPKNFLVMHYAGDVEYESRGFLEKNKDRLYEDAYDLLSRSQFKFLANMFPNSDIKGDK-QTLGAKFRRQLNDLMRTLNQTFPHYIRCIKPNAEKAPMSFT 608          
BLAST of mRNA_E-fasciculatus_F_contig10674.535.1 vs. uniprot
Match: A0A3P3YER9_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YER9_PLABS)

HSP 1 Score: 220 bits (561), Expect = 3.330e-62
Identity = 113/262 (43.13%), Postives = 158/262 (60.31%), Query Frame = 1
Query:    7 TLALNRPDMAYSAADALASAMYDSMFDWLVGRVN-------------------FAVQIFVKNHFEQLCINYTNEKLQQHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDEEVKIPKGSDGGWLSKCKTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIGGFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPR--RLTTLGFKFRKALLDLMELVDTCEPWYIRCIKPNDQKAANTFSSK 729
            T  L   D A+ + DAL+  +Y +MFDW+VGR+N                   F  ++F  N FEQLCIN+TNE+LQQ FN +TF+ EE +Y+ E I+F+H+ +IDNQP+VDL+ +KP G+M LLDEEV +P+GSD  +L K   H+A HP  +  G N  +F ++HYAG+V Y++ GF+  N+D L  D   L++G+       +F   +N     R  TLG +FR  L  LM  + T  P YIRC+KPND K   TF S+
Sbjct:  432 TAVLLSEDQAFDSRDALSKFIYAAMFDWIVGRINQAMSVQSGDRPRSIGILDIFGFEVFDLNSFEQLCINFTNERLQQFFNANTFKLEEELYTMEGIKFDHVAYIDNQPMVDLLTQKPLGIMNLLDEEVVVPQGSDAKFLGKISEHHASHPNFQKGGGNGQQFTIIHYAGKVVYDVAGFLEKNRDTLTPDAMALLNGSSLKFVADMFSQSENMSAKDRKVTLGKQFRNQLDTLMSTLHTTTPHYIRCVKPNDDKRPKTFVSR 693          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10674.535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G548_ECTSI1.170e-166100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSK5_9PHAE1.050e-16092.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C908_9STRA3.470e-11669.23P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7R9UA42_9STRA2.600e-8454.90Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1U0W2_9STRA3.190e-7752.55Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
F0Y2B5_AURAN9.700e-6548.01Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S4L0Q8_9EUKA2.980e-6345.31Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A7S3YT57_9EUKA1.930e-6247.20Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S0DKF9_9EUKA2.520e-6246.40Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A3P3YER9_PLABS3.330e-6243.13Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10674contigE-fasciculatus_F_contig10674:1846..4538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score468.4
Seed ortholog evalue2e-129
Seed eggNOG ortholog2880.D7G548
KEGG koko:K21868
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0015629,GO:0016459,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMyosin head, motor domain
Ec32 orthologEc-00_008480.3
Exons5
Model size732
Cds size702
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10674.535.1prot_E-fasciculatus_F_contig10674.535.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10674 1846..4508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.502237-CDS-E-fasciculatus_F_contig10674:1845..19981622927565.502237-CDS-E-fasciculatus_F_contig10674:1845..1998Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10674 1846..1998 -
1695995598.6603856-CDS-E-fasciculatus_F_contig10674:1845..19981695995598.6603856-CDS-E-fasciculatus_F_contig10674:1845..1998Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10674 1846..1998 -
1622927565.516566-CDS-E-fasciculatus_F_contig10674:2443..27221622927565.516566-CDS-E-fasciculatus_F_contig10674:2443..2722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10674 2444..2722 -
1695995598.6730688-CDS-E-fasciculatus_F_contig10674:2443..27221695995598.6730688-CDS-E-fasciculatus_F_contig10674:2443..2722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10674 2444..2722 -
1622927565.5282722-CDS-E-fasciculatus_F_contig10674:2987..30931622927565.5282722-CDS-E-fasciculatus_F_contig10674:2987..3093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10674 2988..3093 -
1695995598.6861017-CDS-E-fasciculatus_F_contig10674:2987..30931695995598.6861017-CDS-E-fasciculatus_F_contig10674:2987..3093Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10674 2988..3093 -
1622927565.5400145-CDS-E-fasciculatus_F_contig10674:3732..38061622927565.5400145-CDS-E-fasciculatus_F_contig10674:3732..3806Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10674 3733..3806 -
1695995598.6948137-CDS-E-fasciculatus_F_contig10674:3732..38061695995598.6948137-CDS-E-fasciculatus_F_contig10674:3732..3806Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10674 3733..3806 -
1622927565.549901-CDS-E-fasciculatus_F_contig10674:4418..45081622927565.549901-CDS-E-fasciculatus_F_contig10674:4418..4508Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10674 4419..4508 -
1695995598.7061746-CDS-E-fasciculatus_F_contig10674:4418..45081695995598.7061746-CDS-E-fasciculatus_F_contig10674:4418..4508Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10674 4419..4508 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.5638804-UTR-E-fasciculatus_F_contig10674:4508..45381622927565.5638804-UTR-E-fasciculatus_F_contig10674:4508..4538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10674 4509..4538 -
1695995598.7193851-UTR-E-fasciculatus_F_contig10674:4508..45381695995598.7193851-UTR-E-fasciculatus_F_contig10674:4508..4538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10674 4509..4538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10674.535.1

>prot_E-fasciculatus_F_contig10674.535.1 ID=prot_E-fasciculatus_F_contig10674.535.1|Name=mRNA_E-fasciculatus_F_contig10674.535.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=234bp
MAYSAADALASAMYDSMFDWLVGRVNFAVQIFVKNHFEQLCINYTNEKLQ
QHFNKHTFQEEETVYSNEQIRFEHIHFIDNQPVVDLIEKKPYGLMPLLDE
EVKIPKGSDGGWLSKCKTHNAQHPCLRPAGSNPNRFVVVHYAGEVPYEIG
GFVTTNKDDLFRDLYDLVSGAQSDVTRSLFPPKDNNPRRLTTLGFKFRKA
LLDLMELVDTCEPWYIRCIKPNDQKAANTFSSK*
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mRNA from alignment at E-fasciculatus_F_contig10674:1846..4538-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10674.535.1 ID=mRNA_E-fasciculatus_F_contig10674.535.1|Name=mRNA_E-fasciculatus_F_contig10674.535.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2693bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10674:1846..4538- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATCACGCTCGCTCTCAACCGACCGGACATGGCCTACAGTGCTGCGGA CGCACTCGCGTCGGCCATGTACGACAGCATGTTCGACTGGCTCGTCGGGC GGGTGAACTTCGCGGTGCAGGTGCGTGCGGCGGGATTAGTGACGGTTGGG TGGGGCTTGTGCTGCCTCTGCTGTTAAAGGTGTATCTCGGGCGGAAGTTC GTAGAGAGTGGGGAAACATGGGAAACGGGCATGTCGGAGGCTGGGGTGGT ATTGCGCCCCGGCTTGAGATGCCTTGGCACGGTGATGGCAGGCATCCATT TTGTGCAGGCTTGGCTGTCGGGAGCCGAATTGGTGTATGGGATGGCCTTT TCGTCCGGTTCTTGTCAGGGTTTTGGGGAAGGTATATCTGGACATGCCGC ACGCTCTTTGCTCTTCCTTGTTTCCGTACGTAACGCCGGTGAAAAAACTA CGTGTTGCACGCCTTTTGTGTTTTTCAATTCCTTTGGGTTCGGATGGAAG ATATGTCGAAACATGTGGTTCGTTGTTTCCCTTTCTTCTTCTTTAAGACG GCCAAGGAGCGCTTGAACGGGGTCGTCCAGCAATCCGGAACTTGTGGGGC ATTTTCGCTCGTAGATTTCTTGTCTCCCCTGACCGACTGTTTGCTGCCTC TTTTTTGCCGTTGTGCTATTTTTTGCTTCAGGGGGAGCACTCCAACAAGT TCATCGGGGTGCTCGACATCTTCGGTTTCGAGATCTTCGTTAAGAACCAC TTCGAGCAGCTGTGCATCAACTACACCAACGAAAAGCTGCAGCAGCACTT CAACAAGTGAGGAGAAGGAGTGAAGAAAGCAACAGAAGATTGGTCTCTCT TTGTGTGTGTGATCCTGTGCCGCGCTGCGAACAGTGCCCCCCTCTCTTCG CTTGTTCGTCCTGTTTTTCCCTCGATTTCCTGCTTTATTGCCGCTCTACT GTAATCGATGTCTATAACTACTGCTGTGTTTTTCCGCGGAACTGACTTGA AAAAGCAATAACAACAATCAAGTGACCAGACGACAAAGAGAAAAAACAAA ACCACAACAACAACAGCAAAATCTTGCCAGTAATGCTGGTAAACAAAAGT AGTCTGGCTGAGCGAAACGTGTGTTCGCCGTAGCCAAGCGGTGTGTTCAG AAAAGCCCGTTTTTCACTTTCGAGGCCAGCTTTCGACATCGACACACATG TTGCCTGGCAAAAATGAGCACGCGGCATCTCAAGTGTAGTTCGGAGGTTT GTTGCTCAGCGTAACGGATCTGCGACGTTCGTGGCATGTTTTTGTTTTTC TGCTAGCAGTCCTTTGCGTTTCTCAGTTTTTCTTTTTTTACCTAATACTA TGTGACTGGAGACCCTAGTCTCACAACTATCGTTTTTCCGATTTTTTGGC TGCTTTTCTCTTGTCGTTGTGATGAAATCATCGTCGAAAAAAAAGGCACA CGTTCCAAGAGGAAGAGACGGTGTACTCCAACGAACAGATCCGGTTCGAG CACATCCACTTCATCGACAACCAGCCGGTAGTCGACCTCATCGAGAAGAA GGTACGGCGTAGGGGGGACCCGCAGATGTGCCGGTCGGGGGGGGTGCCGT GTGCCCGCTTTTGTAGTGCCTGTGTAATCGTGCCACATGGGTAGAAGTTC AGAAGTCGTTTCACCCACAAACTATCCCTTTGACTTCGCTACTCGAATCT GCGATCGTGGCACCACTGCTCGGTACTGCTTCTAGCGCTTGTGGTGCTAG TCACGCGCTCACCACCACCAACAAAAACCGCCTCGCTCCCCCCCCACCCC CGCCCCGTTTGCGCAGCCGTACGGGCTGATGCCCCTCCTGGACGAAGAGG TCAAGATCCCCAAGGGCTCCGACGGCGGCTGGCTATCCAAGTGCAAGACC CATAACGCCCAGCACCCGTGCCTGCGGCCGGCGGGGTCTAACCCCAACCG CTTCGTGGTCGTCCACTACGCCGGGGAGGTGCCGTACGAGATCGGCGGCT TCGTGACCACCAACAAGGACGACCTGTTCAGGGACCTCTACGATCTGGTG TCGGGCGCGCAGAGCGACGTCACGCGGTCCCTTTTCCCGCCCAAGGTTTG TTGGGCTGGCGTGCTTTGACATGGCTTGTGTGCGGCCTGAACCCTAGCCC TAACGTTGTGTGCGGTGTGTGTGTTTGCTTGTGTGCTTCTGCACGCTCGT TGTTGTTGGGGGTATGCATAGTCCTAGGGATGGGTAGACCCTACGCTCGC TCGAGCTCTCTTGAACGACGATCCCTCACTAAACTGATCACCACTCCCTC CCTCTTTGAGCGTGTTGTTTTTTCCATGCTTAGTTTTACTCCACGAGCCC CGGAATCGTTTCGTTTTGTCCTCGGTCCTTGTGTCTCTCTCGTGTGTTCC GCACGGCCACGTGTGGCGACCCTCTTTCGAACACATGCATACGTCATAGT CTAAGCCATTTGCCGAAACACCTTCCACGGCGGCCTGTGTCCCCCCCTTC TTTTTTTTTCTTCTTGTTTTTGTTTTGTGTGTGTGTGCAGGACAACAACC CGCGGCGGCTTACGACGCTGGGCTTCAAGTTCCGTAAGGCCTTGCTGGAT CTGATGGAGCTTGTCGACACTTGCGAGCCGTGGTACATCCGGTGCATCAA GCCCAACGATCAGAAGGCGGCTAACACATTCAGCTCAAAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10674:1846..4538-

>mRNA_E-fasciculatus_F_contig10674.535.1 ID=mRNA_E-fasciculatus_F_contig10674.535.1|Name=mRNA_E-fasciculatus_F_contig10674.535.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1404bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10674:1846..4538- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCTACAGTGCTGCGGACGCACTCGCGTCGGCCATGTACGACAGCAT
GTTCGACTGGCTCGTCGGGCGGGTGAACTTCGCGGTGCAGATGGCCTACA
GTGCTGCGGACGCACTCGCGTCGGCCATGTACGACAGCATGTTCGACTGG
CTCGTCGGGCGGGTGAACTTCGCGGTGCAGATCTTCGTTAAGAACCACTT
CGAGCAGCTGTGCATCAACTACACCAACGAAAAGCTGCAGCAGCACTTCA
ACAAATCTTCGTTAAGAACCACTTCGAGCAGCTGTGCATCAACTACACCA
ACGAAAAGCTGCAGCAGCACTTCAACAAGCACACGTTCCAAGAGGAAGAG
ACGGTGTACTCCAACGAACAGATCCGGTTCGAGCACATCCACTTCATCGA
CAACCAGCCGGTAGTCGACCTCATCGAGAAGAAGGCACACGTTCCAAGAG
GAAGAGACGGTGTACTCCAACGAACAGATCCGGTTCGAGCACATCCACTT
CATCGACAACCAGCCGGTAGTCGACCTCATCGAGAAGAAGCCGTACGGGC
TGATGCCCCTCCTGGACGAAGAGGTCAAGATCCCCAAGGGCTCCGACGGC
GGCTGGCTATCCAAGTGCAAGACCCATAACGCCCAGCACCCGTGCCTGCG
GCCGGCGGGGTCTAACCCCAACCGCTTCGTGGTCGTCCACTACGCCGGGG
AGGTGCCGTACGAGATCGGCGGCTTCGTGACCACCAACAAGGACGACCTG
TTCAGGGACCTCTACGATCTGGTGTCGGGCGCGCAGAGCGACGTCACGCG
GTCCCTTTTCCCGCCCAAGCCGTACGGGCTGATGCCCCTCCTGGACGAAG
AGGTCAAGATCCCCAAGGGCTCCGACGGCGGCTGGCTATCCAAGTGCAAG
ACCCATAACGCCCAGCACCCGTGCCTGCGGCCGGCGGGGTCTAACCCCAA
CCGCTTCGTGGTCGTCCACTACGCCGGGGAGGTGCCGTACGAGATCGGCG
GCTTCGTGACCACCAACAAGGACGACCTGTTCAGGGACCTCTACGATCTG
GTGTCGGGCGCGCAGAGCGACGTCACGCGGTCCCTTTTCCCGCCCAAGGA
CAACAACCCGCGGCGGCTTACGACGCTGGGCTTCAAGTTCCGTAAGGCCT
TGCTGGATCTGATGGAGCTTGTCGACACTTGCGAGCCGTGGTACATCCGG
TGCATCAAGCCCAACGATCAGAAGGCGGCTAACACATTCAGCTCAAAGTG
AGACAACAACCCGCGGCGGCTTACGACGCTGGGCTTCAAGTTCCGTAAGG
CCTTGCTGGATCTGATGGAGCTTGTCGACACTTGCGAGCCGTGGTACATC
CGGTGCATCAAGCCCAACGATCAGAAGGCGGCTAACACATTCAGCTCAAA
GTGA
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