mRNA_E-fasciculatus_F_contig10038.53.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E-fasciculatus_F_contig10038.53.1 vs. uniprot
Match: D8LLL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLL4_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 3.980e-67
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 1

Query:    1 QVAALRAHAAEKESGLNMAREENGRLKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGANDFMGGQRPPDVF 342
            +VA L+AHAAEKESGLNMAREENGRLKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGA+DFMGGQRPPDVF
Sbjct:  135 EVAVLQAHAAEKESGLNMAREENGRLKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGASDFMGGQRPPDVF 248

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BLAST of mRNA_E-fasciculatus_F_contig10038.53.1 vs. uniprot
Match: A0A836CIB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIB6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.850e-20
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 1

Query:   76 LKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAM-GNSGANDFMGGQRPPDVF 342
            ++E +G   ++LER   ENRILKRAV IQNT+ K++E QL   Q+AA  AA Y KR+EQ NYAL VRVQ M G  G       ++PPDV+
Sbjct:    1 MREAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMGGEGGGFMERQPPDVY 90

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BLAST of mRNA_E-fasciculatus_F_contig10038.53.1 vs. uniprot
Match: A0A6V1NE11_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NE11_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 1.840e-16
Identity = 44/103 (42.72%), Postives = 65/103 (63.11%), Query Frame = 1

Query:   34 KESGLNMAREENGRLKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGANDFMGGQRPPDVF 342
            KE+ L+  + EN  L+  +  FQ EL+R+  EN+ILK+AV +QN+K KE E  +   +    QA +++K+LEQTNYAL + ++   NS +      QRPPDVF
Sbjct:  113 KEASLSQFKIENASLQNQLAQFQHELQRIQEENKILKKAVNLQNSKAKESEQTIKMQEATLVQAVDHIKKLEQTNYALRIHLE---NSKSTPLTFDQRPPDVF 212

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BLAST of mRNA_E-fasciculatus_F_contig10038.53.1 vs. uniprot
Match: K3XAW0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAW0_GLOUD)

HSP 1 Score: 74.3 bits (181), Expect = 3.580e-14
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 1

Query:   34 KESGLNMAREENGRLKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGANDFMGGQRPPDVF 342
            KE      R E  ++        KE+ERL +EN++LKRA+ IQN + +E + +   L+  A QAAE++KRLEQ+NYALSV +Q   ++ +  F    +PPDVF
Sbjct:   87 KEVEFQQCRHELAQVHASTQSRDKEIERLQSENKLLKRAITIQNQQKEECQQENAVLRNLATQAAEHIKRLEQSNYALSVHLQTSTSTSSEHF----QPPDVF 185

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BLAST of mRNA_E-fasciculatus_F_contig10038.53.1 vs. uniprot
Match: D0P4Q0_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P4Q0_PHYIT)

HSP 1 Score: 72.0 bits (175), Expect = 4.320e-14
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1

Query:   73 RLKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGANDFMGGQRPPDVF 342
            RL E V     +  RL  EN++LKRAV IQN + +E++ + + L+Q A QAAE++KRLEQ NY L V +Q   N+G       Q+PPDV+
Sbjct:   17 RLWERVDAQASDAARLQGENKLLKRAVAIQNQQKEEVQNENNALKQLATQAAEHMKRLEQANYTLRVHLQTSTNAGLGHQ---QQPPDVY 103

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BLAST of mRNA_E-fasciculatus_F_contig10038.53.1 vs. uniprot
Match: A0A5D6XUD9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUD9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.880e-13
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 1

Query:    1 QVAALRA----HAAEKESGLNMAREENGRLKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGANDFMGGQRPPDVF 342
            ++A +RA    HA +KE  L   R E  + +       ++LERL+ EN++LKRA+ IQ+ +  E + +   L+  A QAAE++KRLE +NYALSV +Q   N+  +      +PPDVF
Sbjct:   71 EIARIRAEYEQHAMKKEMELQSCRRELQQARGAAHATARDLERLAGENKLLKRAITIQSQQKDECQQENAVLRNLATQAAEHIKRLEASNYALSVHLQTSTNAATSSRF---QPPDVF 185

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BLAST of mRNA_E-fasciculatus_F_contig10038.53.1 vs. uniprot
Match: A0A6A3Z7N1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Z7N1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.390e-13
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 1

Query:   34 KESGLNMAREENGRLKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGANDFMGGQRPPDVF 342
            KE+      +E    +E V     ++ RL  EN++LKRAVGIQN + +E++ + + L+Q A QAAE+++RLEQ NY L V +Q   ++G       Q+PPDV+
Sbjct:   84 KEAEFQRLGQELQHTQERVAQQASDVARLQGENKLLKRAVGIQNQQKEEVQHENNALKQLATQAAEHMRRLEQANYTLRVHLQTSTSAGNGHQ---QQPPDVY 183

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BLAST of mRNA_E-fasciculatus_F_contig10038.53.1 vs. uniprot
Match: A0A7S2LD89_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LD89_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.540e-12
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 1

Query:   76 LKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGANDFMGGQRPPDVF 342
            LK   G  Q + +++  ENRILKRAV IQ  +  ++  +L G +    QA E ++RLEQ N  L  ++QA  +S  NDFMG  RPPDV+
Sbjct:  152 LKSENGSLQTQNQKVEHENRILKRAVTIQQDRQHQVSAELEGARTFKEQAEERIRRLEQMNLTLQYQMQAQNSSAGNDFMG-LRPPDVY 239

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BLAST of mRNA_E-fasciculatus_F_contig10038.53.1 vs. uniprot
Match: G4ZQH3_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZQH3_PHYSP)

HSP 1 Score: 67.4 bits (163), Expect = 1.410e-11
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1

Query:  106 ELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGANDFMGGQRPPDVF 342
            E+ RL  EN++LKRAV IQN + + +E +   L+Q A QAAE+++RLEQ NY L V +Q   ++G       Q+PPDV+
Sbjct:  102 EVARLQGENKLLKRAVNIQNEQNQAMEQENTALKQLATQAAEHIRRLEQANYTLRVHLQTSTSAGLGHQ---QQPPDVY 177

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BLAST of mRNA_E-fasciculatus_F_contig10038.53.1 vs. uniprot
Match: D0MRK8_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MRK8_PHYIT)

HSP 1 Score: 65.1 bits (157), Expect = 2.110e-11
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  115 RLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGANDFMGGQRP 330
            RL  EN++LKRAV IQN + +E++ + + L+Q A QAAE++KRLEQ NY L V +Q   N+G    +   RP
Sbjct:   13 RLQGENKLLKRAVAIQNQQKEEVQNENNALKQLATQAAEHMKRLEQANYTLRVHLQTSTNAGLGHHLMCTRP 84

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig10038.53.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig10038.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
D8LLL4_ECTSI	3.980e-67	96.49	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CIB6_9STRA	3.850e-20	52.22	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6V1NE11_HETAK	1.840e-16	42.72	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
K3XAW0_GLOUD	3.580e-14	41.75	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
D0P4Q0_PHYIT	4.320e-14	45.56	Uncharacterized protein n=1 Tax=Phytophthora infes...	[more]
A0A5D6XUD9_9STRA	3.880e-13	38.98	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A6A3Z7N1_9STRA	7.390e-13	39.81	Uncharacterized protein n=4 Tax=Phytophthora TaxID...	[more]
A0A7S2LD89_9STRA	3.540e-12	43.82	Hypothetical protein n=2 Tax=Skeletonema marinoi T...	[more]
G4ZQH3_PHYSP	1.410e-11	45.57	Uncharacterized protein n=1 Tax=Phytophthora sojae...	[more]
D0MRK8_PHYIT	2.110e-11	47.22	Uncharacterized protein n=1 Tax=Phytophthora infes...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	74.3
Seed ortholog evalue	4.1e-11
Seed eggNOG ortholog	36331.EPrPI00000018193
EggNOG free text desc.	Source PGD
EggNOG OGs	1MF8R@121069,2E7H6@1,2SE34@2759
COG Functional cat.	S
Best tax level	Pythiales
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	2
Model size	345
Cds size	345
Stop	1
Start	0

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig10038:3429..5026-
coding sequence from alignment at E-fasciculatus_F_contig10038:3429..5026-

protein sequence of mRNA_E-fasciculatus_F_contig10038.53.1

>prot_E-fasciculatus_F_contig10038.53.1 ID=prot_E-fasciculatus_F_contig10038.53.1|Name=mRNA_E-fasciculatus_F_contig10038.53.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp
QVAALRAHAAEKESGLNMAREENGRLKEGVGMFQKELERLSAENRILKRA
VGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSG
ANDFMGGQRPPDVF*

mRNA from alignment at E-fasciculatus_F_contig10038:3429..5026-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig10038.53.1 ID=mRNA_E-fasciculatus_F_contig10038.53.1|Name=mRNA_E-fasciculatus_F_contig10038.53.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1598bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10038:3429..5026- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTTGCAGCCCTGCGGGCGCACGCGGCGGAGAAGGAGAGCGGTCTCAA
CATGGCCCGCGAGGAAAACGGTCGGCTGAAGGAAGGCGTGGGGATGTTCC
AGAAGGAGCTCGAGCGACTCTCCGCCGAGAACCGTATCCTCAAGCGTGCC
GTCGGTATCCAAAACACCAAGGGCAAGGAGGTGGGTTCACGGTTGGGTAC
AATAGGGAGCGGCGGCGGCGGGCGGCGCTTTTGTTGTGCGGAATGCTTGT
ATTGGAGTCATTCTCATATTGTGTCGTATTGCGATGTAGACCCCTAACGT
ATCCATCACGTCACCCAGGCTTACCCTACTCTACAACATTCTCCGGGTTC
CTCATGCACGCACCAAACACACCAACGTAGACCTCGGCAGGCTGTCACAA
CTCAACGTGCTGCCAAGTGTGCGTTGGATTTGTTGTCGCGAGAGTTTTCG
CCGGCCTGGGCACCCCTCGCTCGACTGACTGTTCCGGCGCGGCCCCCACT
GCTGCTGTGTTGGCTGCAGGCAGGAGGTGTTGTAGCATACGGTTTGTAGG
CTGTTCTGGTGTGCAGGCGGTTTAGCATTTTTGAGGAAGCTCATGGTCCA
GGTGGTGCTCTTCCGCGGTGCCACCGCAGGGACGGATTTTCAAAGGCTTG
GAAGAGGGAGGAGGAACAACAGAGTGGTTGGTTGAAGCCGGGAAGATAAT
TGACAGATTGGTGCTTGTGGGGCCCATGCGCCGACATGGACAATCCAACG
GGGATTGGCAGCAGCCCCCGACATAGCAGTAGTAGTCATACCGAATGTCG
CAGGGGTCGCCCGTGCATAGCTTCTATGAACGAGGCGGAAAGGGCGGCGG
CACAAGAAGTTTTGCGTCTTTCATACCCCGCGCTGCCTCTCTTCAGCCAC
GACCACTCCATCCGTCTACCCCAGGAACAACAATGGGATGCGATTCGACC
CAAAAATGGGTCGCATCGCATCCCATTTCCGTAGCTGGGATAAACCGACG
GAGAGCTCGACGCTCAGGAGCCGCAGTGCGGGGCATGAATGACGGAGACT
TGATATGCCGTCGCTCCTTTTCAGTGGCCGAGAGCGCGGGCGAGCTCAGC
GGCGACGTTGTTGAGGATCCTCCTCCGTTGACATGCACCACTACTGCGTC
CATGGGTGGCAGCGGGGCGTGCAATCAAGGGTGGCGGCCGAATAATATCC
TCTCATGTCTTGCCGGTTTTGACCGTTACTTGGTGGGTAGGCCCCTTTGT
AGCAGACGTTCACACGGCGCCCCCCCTCACCCGCCTGGAGTCCGCCTAAC
AATTATTTGTTGTGCTACAGCAGTTTACCCTCCGTGGGACTCGTCACTCA
GTGCGTTCGTGCGAAGCTTAATTTTGACTCGCCTTCCCCTGTATTTTGTG
TGACGTACACCTCTTGCGTCTTGTTTTTTTCAGCTGGAGGGCCAGCTGCA
CGGGCTCCAGCAGGCGGCGGGGCAGGCGGCGGAGTACGTGAAGCGGCTCG
AGCAGACGAACTACGCCCTCTCCGTGCGCGTGCAGGCCATGGGAAACTCG
GGCGCGAACGACTTCATGGGCGGCCAGCGCCCCCCGGACGTGTTTTGA

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10038:3429..5026-

>mRNA_E-fasciculatus_F_contig10038.53.1 ID=mRNA_E-fasciculatus_F_contig10038.53.1|Name=mRNA_E-fasciculatus_F_contig10038.53.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10038:3429..5026- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTTGCAGCCCTGCGGGCGCACGCGGCGGAGAAGGAGAGCGGTCTCAA
CATGGCCCGCGAGGAAAACGGTCGGCTGAAGGAAGGCGTGGGGATGTTCC
AGAAGGAGCTCGAGCGACTCTCCGCCGAGAACCGTATCCTCAAGCGTGCC
GTCGGTATCCAAAACACCAAGGGCAAGGAGCAGGTTGCAGCCCTGCGGGC
GCACGCGGCGGAGAAGGAGAGCGGTCTCAACATGGCCCGCGAGGAAAACG
GTCGGCTGAAGGAAGGCGTGGGGATGTTCCAGAAGGAGCTCGAGCGACTC
TCCGCCGAGAACCGTATCCTCAAGCGTGCCGTCGGTATCCAAAACACCAA
GGGCAAGGAGCTGGAGGGCCAGCTGCACGGGCTCCAGCAGGCGGCGGGGC
AGGCGGCGGAGTACGTGAAGCGGCTCGAGCAGACGAACTACGCCCTCTCC
GTGCGCGTGCAGGCCATGGGAAACTCGGGCGCGAACGACTTCATGGGCGG
CCAGCGCCCCCCGGACGTGTTTTGACTGGAGGGCCAGCTGCACGGGCTCC
AGCAGGCGGCGGGGCAGGCGGCGGAGTACGTGAAGCGGCTCGAGCAGACG
AACTACGCCCTCTCCGTGCGCGTGCAGGCCATGGGAAACTCGGGCGCGAA
CGACTTCATGGGCGGCCAGCGCCCCCCGGACGTGTTTTGA