prot_E_fasciculatus_S2_contig9835.17843.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig9835.17843.1
Unique Name	prot_E_fasciculatus_S2_contig9835.17843.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	74

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9835.17843.1 vs. uniprot
Match: A0A6H5KCY0_9PHAE (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 9.430e-31
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0

Query:    7 GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGPPGVGVHLRAIGGAMSEE 71
            GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFG PGVGVHLRAIGGAMSEE
Sbjct:  333 GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEE 397

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BLAST of mRNA_E_fasciculatus_S2_contig9835.17843.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.000e-30
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0

Query:    7 GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGPPGVGVHLRAIGGAMSEE 71
            GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFG PGVGVHLRAIGGAMSEE
Sbjct:  287 GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEE 351

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9835.17843.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig9835.17843.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2

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POSITION

0


Match Name	E-value	Identity	Description
A0A6H5KCY0_9PHAE	9.430e-31	98.46	MMS19 nucleotide excision repair protein (Fragment...	[more]
D8LJJ0_ECTSI	1.000e-30	98.46	MMS19 nucleotide excision repair protein n=1 Tax=E...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029240	MMS19, N-terminal	PFAM	PF14500	MMS19_N	coord: 7..72 e-value: 5.8E-13 score: 49.0

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9835	contig	E_fasciculatus_S2_contig9835:177..398 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9835.17843.1	mRNA_E_fasciculatus_S2_contig9835.17843.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig9835 177..398 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig9835.17843.1 ID=prot_E_fasciculatus_S2_contig9835.17843.1|Name=mRNA_E_fasciculatus_S2_contig9835.17843.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=74bp
MLCFCIGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVR
AFGPPGVGVHLRAIGGAMSEEVRR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029240	MMS19_N