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Homology
BLAST of mRNA_E_fasciculatus_S2_contig9835.17843.1 vs. uniprot
Match: A0A6H5KCY0_9PHAE (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY0_9PHAE) HSP 1 Score: 122 bits (306), Expect = 9.430e-31 Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0 Query: 7 GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGPPGVGVHLRAIGGAMSEE 71
GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFG PGVGVHLRAIGGAMSEE
Sbjct: 333 GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEE 397
BLAST of mRNA_E_fasciculatus_S2_contig9835.17843.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI) HSP 1 Score: 122 bits (306), Expect = 1.000e-30 Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0 Query: 7 GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGPPGVGVHLRAIGGAMSEE 71
GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFG PGVGVHLRAIGGAMSEE
Sbjct: 287 GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEE 351
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR029240 | MMS19, N-terminal | PFAM | PF14500 | MMS19_N | coord: 7..72
e-value: 5.8E-13
score: 49.0 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_E_fasciculatus_S2_contig9835.17843.1 ID=prot_E_fasciculatus_S2_contig9835.17843.1|Name=mRNA_E_fasciculatus_S2_contig9835.17843.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=74bp
MLCFCIGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVR
AFGPPGVGVHLRAIGGAMSEEVRR back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029240 | MMS19_N |
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