prot_E_fasciculatus_S2_contig812.16275.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig812.16275.1
Unique Nameprot_E_fasciculatus_S2_contig812.16275.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length678
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs. uniprot
Match: D7FSS1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS1_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 1.500e-51
Identity = 192/469 (40.94%), Postives = 223/469 (47.55%), Query Frame = 0 
Query:  231 SCPSVGDDGACESDEFCTPSTDGYICDIEPNSCLDPEHSLYGCEAGNIEIYLDHCGIADEDLEDLAKCFDNAGRSSVTVLYLECTKRIIELHPREHRIEWTLRTLTRGCVNSPFLARILSALELVRHLLGNDLTILPSGLFDGLYALKVLSLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD------------------------------------------------------------------------------------------------------------------------NTDLQCLPSLIGSPLLTDDELYLPDGFEDGGVCSCPSLGDDGACEFDESCDPGTDGYTCSTRTNPCLNPDHQSYKCSSGTTSIILTEYFCGDGWTDPGIEDVVWCFDNTGRTSVISISLESIASTTLPAG---LFDGFNNLRTLTIN 576
            +CPS GDDGAC S+E C+P TDGYIC I  NSCLDPE+ LYGCEAG+ EI L +CGI DEDLEDL +CFDN GR+SVT ++L                  +  +L  G  +     + LS        LGN L          L +L  L L     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                                                         N  LQCLPSL G  L+   EL+LPDGFE GG C+CPSLGDDGAC+ DESC PGTDGY CS   N C +PD+  Y C  G+T I L    CG G  D G  D+  CF+N GR SV +IS+   + T LP G   +F GF++L TL +N
Sbjct:    6 ACPSAGDDGACASNESCSPGTDGYICSIVRNSCLDPENDLYGCEAGSTEINLSNCGIGDEDLEDLVECFDNVGRASVTAIWLGSN---------------SFTSLAAGLFDGFDNIKSLS--------LGNLLXXXXXXXXXXLASLSYLYLGGNQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRWNDGLQCLPSLFGLGLVNGAELFLPDGFESGGECACPSLGDDGACDSDESCTPGTDGYVCSAVRNSCFDPDYDLYGCEPGSTLIDLDN--CGIGDEDLG--DLEECFNNVGRASVTTISMNYNSLTELPGGEDGIFAGFDSLNTLMLN 447
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BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs. uniprot
Match: D7FSS0_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS0_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 5.880e-31
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 
Query:  232 CPSVGDDGACESDEFCTPSTDGYICDIEPNSCLDPEHSLYGCEAGNIEIYLDHCGIADEDLEDLAKCFDNAGRSSVTVL 310
            CPS+GDDGACESDE CTP TDGYIC    NSC DPE+ LYGCE G+ +I LD+CGI DEDLEDL +CF+N GR+SVT +
Sbjct:    9 CPSLGDDGACESDESCTPGTDGYICSTSKNSCFDPEYDLYGCEPGSTQIDLDNCGIGDEDLEDLRECFENVGRASVTYI 87
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BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs. uniprot
Match: D8LGH9_ECTSI (Hypothetical leucine rich repeat protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.580e-16
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 
Query:  445 SPLLTDDELYLPDGFEDGGVCSCPSLGDDGACEFDESCDPGTDGYTCST 493
            SPLLTDD L+LPDGFEDGG+CSCP   +DGACE DESC PGTDGYTCST
Sbjct:  103 SPLLTDDSLFLPDGFEDGGICSCPE--EDGACESDESCAPGTDGYTCST 149
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs. uniprot
Match: D8LGH8_ECTSI (Variable lymphocyte receptor diversity region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.050e-15
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 
Query:  445 SPLLTDDELYLPDGFEDGGVCSCPSLGDDGACEFDESCDPGTDGYTCST 493
            SPLLTDD L+LPDGFEDGG+CSCP   +DGACE DESC PGTDGYTCST
Sbjct:  174 SPLLTDDSLFLPDGFEDGGICSCPE--EDGACESDESCAPGTDGYTCST 220
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs. uniprot
Match: D7FSR9_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR9_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 9.060e-12
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 0 
Query:   41 LTDYSCGNGWTDPGIEDLVSCFDNTGRTSVTSIALMDNQFTSLPAGLFDGLDAVE 95
            LT+ SCG+G TD  ++D+ +CFDNTGRTSVT I L  NQ  SLPAGLF+GLDA++
Sbjct:   62 LTEDSCGDGLTDSDVDDVAACFDNTGRTSVTKIDLSGNQLASLPAGLFNGLDALQ 116
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FSS1_ECTSI1.500e-5140.94Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FSS0_ECTSI5.880e-3169.62Hypothetical leucine rich repeat protein (Partial)... [more]
D8LGH9_ECTSI2.580e-1681.63Hypothetical leucine rich repeat protein kinase n=... [more]
D8LGH8_ECTSI1.050e-1581.63Variable lymphocyte receptor diversity region n=1 ... [more]
D7FSR9_ECTSI9.060e-1263.64Hypothetical leucine rich repeat protein (Partial)... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 91..114
e-value: 0.0093
score: 25.2
coord: 139..162
e-value: 0.014
score: 24.6
coord: 398..421
e-value: 0.0076
score: 25.5
coord: 422..446
e-value: 160.0
score: 3.5
coord: 374..397
e-value: 0.0046
score: 26.2
coord: 567..590
e-value: 11.0
score: 13.0
coord: 349..373
e-value: 110.0
score: 4.7
coord: 68..90
e-value: 100.0
score: 5.0
coord: 163..186
e-value: 0.0025
score: 27.0
coord: 598..616
e-value: 24.0
score: 10.1
coord: 187..211
e-value: 84.0
score: 5.7
coord: 115..138
e-value: 6.3
score: 14.9
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 593..612
e-value: 35.0
score: 9.5
coord: 139..158
e-value: 310.0
score: 2.3
coord: 187..207
e-value: 41.0
score: 9.0
coord: 374..393
e-value: 380.0
score: 1.6
coord: 422..442
e-value: 130.0
score: 5.1
coord: 91..110
e-value: 62.0
score: 7.7
coord: 163..182
e-value: 44.0
score: 8.8
NoneNo IPR availablePANTHERPTHR24366FAMILY NOT NAMEDcoord: 547..630
coord: 358..441
coord: 46..212
NoneNo IPR availablePANTHERPTHR24366:SF102LEUCINE RICH REPEAT CONTAINING 15coord: 547..630
coord: 358..441
coord: 46..212
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..677
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.814
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 61..639
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 530..643
e-value: 6.6E-12
score: 46.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 38..209
e-value: 2.6E-34
score: 119.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 268..473
e-value: 2.5E-19
score: 71.3
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 165..213
e-value: 2.4E-6
score: 27.2
coord: 377..433
e-value: 1.8E-13
score: 50.0
coord: 69..128
e-value: 2.0E-11
score: 43.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig812contigE_fasciculatus_S2_contig812:2303..17729 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig812.16275.1mRNA_E_fasciculatus_S2_contig812.16275.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig812 2303..27034 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig812.16275.1 ID=prot_E_fasciculatus_S2_contig812.16275.1|Name=mRNA_E_fasciculatus_S2_contig812.16275.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=678bp
MRVFTFALALWATGVANGTNPCLNPDHQSYQCSSGTTSISLTDYSCGNGW
TDPGIEDLVSCFDNTGRTSVTSIALMDNQFTSLPAGLFDGLDAVENLHLS
GNQLVSLPAGVFDGLDVVRYISLQDNQLISLPVGLFDGLDDLQSFNLYGN
QLASLPVGLFDGLDTLRFLSLNDNRLASLPAGIFDGLGELKYLNLEDNDE
LQCLPSLTGSPLLTDDELYLPDGFEDGGICSCPSVGDDGACESDEFCTPS
TDGYICDIEPNSCLDPEHSLYGCEAGNIEIYLDHCGIADEDLEDLAKCFD
NAGRSSVTVLYLECTKRIIELHPREHRIEWTLRTLTRGCVNSPFLARILS
ALELVRHLLGNDLTILPSGLFDGLYALKVLSLSDNALVVLPAGIFDDLGA
LQSLYLQQNSLSVLRAGLFDDLESLTQLTLEDNTDLQCLPSLIGSPLLTD
DELYLPDGFEDGGVCSCPSLGDDGACEFDESCDPGTDGYTCSTRTNPCLN
PDHQSYKCSSGTTSIILTEYFCGDGWTDPGIEDVVWCFDNTGRTSVISIS
LESIASTTLPAGLFDGFNNLRTLTINDTPLTTLPLGAFDGLDSDSFYYLH
LSGNQLVSLPVGVFDGLDVLQSILQTVNLLTVPVSQQDCRVSLGDKETNG
RRLPSLLKVQCVHSSVGPCFMWRKSAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf
IPR003591Leu-rich_rpt_typical-subtyp