mRNA_E_fasciculatus_S2_contig812.16275.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS1_ECTSI) HSP 1 Score: 322 bits (824), Expect = 1.210e-94 Identity = 201/258 (77.91%), Postives = 219/258 (84.88%), Query Frame = 2
Query: 2288 LEGNDELQCFPAISGSARLRDESLYLPDDVEDGSICSCPSLEDDGACESNESCAPGTDGYICTARVRNSCFDPEYDLYGCEPGSTLIDLDNCGIEDEDLEDLIECFDNVGRTSVTTISMNSNSLTELPGGENGIFTGFDSLISLMLNQNNIETLYADSFKGLGGSLTSLSIIQSRLTTIPVGCFDNLVGLQSMRLYGNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESLTSSLDLSENEDLQCVPSLAG 3061
L ND LQC P++ G + L+LPD E G C+CPSL DDGAC+S+ESC PGTDGY+C+A VRNSCFDP+YDLYGCEPGSTLIDLDNCGI DEDL DL ECF+NVGR SVTTISMN NSLTELPGGE+GIF GFDSL +LMLNQNNIETLYA+SF+GLGG+LTSLSIIQSRLTTIPVGCFDNLVGLQ+M LYGND XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SENEDLQCVPS+ G
Sbjct: 302 LRWNDGLQCLPSLFGLGLVNGAELFLPDGFESGGECACPSLGDDGACDSDESCTPGTDGYVCSA-VRNSCFDPDYDLYGCEPGSTLIDLDNCGIGDEDLGDLEECFNNVGRASVTTISMNYNSLTELPGGEDGIFAGFDSLNTLMLNQNNIETLYAESFEGLGGALTSLSIIQSRLTTIPVGCFDNLVGLQTMTLYGNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SENEDLQCVPSMEG 557
BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs.
Match: Hypothetical (leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS0_ECTSI) HSP 1 Score: 223 bits (569), Expect = 1.180e-63 Identity = 112/153 (73.20%), Postives = 122/153 (79.74%), Query Frame = 2
Query: 2399 CPSLEDDGACESNESCAPGTDGYICTARVRNSCFDPEYDLYGCEPGSTLIDLDNCGIEDEDLEDLIECFDNVGRTSVTTISMNSNSLTELPGGENGIFTGFDSLISLMLNQNNIETLYADSFKGLGGSLTSLSIIQSRLTTIPVGCFDNLVGL 2857
CPSL DDGACES+ESC PGTDGYIC+ +NSCFDPEYDLYGCEPGST IDLDNCGI DEDLEDL ECF+NVGR SVT I+MNSNSLTELPGGENG+F GF+SL +L L QNNI+TLYADSF+GLGGSLTSL NL GL
Sbjct: 9 CPSLGDDGACESDESCTPGTDGYICSTS-KNSCFDPEYDLYGCEPGSTQIDLDNCGIGDEDLEDLRECFENVGRASVTYIAMNSNSLTELPGGENGLFAGFESLKTLGLVQNNIKTLYADSFEGLGGSLTSLYXXXXXXXXXXXXXXXNLAGL 160
BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs.
Match: Hypothetical (leucine rich repeat protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH9_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 4.470e-16 Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1
Query: 1333 SPLLTDDELYLPDGFEDGGVCSCPSLGDDGACEFDESCDPGTDGYTCST 1479
SPLLTDD L+LPDGFEDGG+CSCP +DGACE DESC PGTDGYTCST
Sbjct: 103 SPLLTDDSLFLPDGFEDGGICSCPE--EDGACESDESCAPGTDGYTCST 149
BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs.
Match: Variable (lymphocyte receptor diversity region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH8_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 1.900e-15 Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1
Query: 1333 SPLLTDDELYLPDGFEDGGVCSCPSLGDDGACEFDESCDPGTDGYTCST 1479
SPLLTDD L+LPDGFEDGG+CSCP +DGACE DESC PGTDGYTCST
Sbjct: 174 SPLLTDDSLFLPDGFEDGGICSCPE--EDGACESDESCAPGTDGYTCST 220
BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs.
Match: Hypothetical (leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR9_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 1.570e-11 Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1
Query: 121 LTDYSCGNGWTDPGIEDLVSCFDNTGRTSVTSIALMDNQFTSLPAGLFDGLDAVE 285
LT+ SCG+G TD ++D+ +CFDNTGRTSVT I L NQ SLPAGLF+GLDA++
Sbjct: 62 LTEDSCGDGLTDSDVDDVAACFDNTGRTSVTKIDLSGNQLASLPAGLFNGLDALQ 116
BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL5_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 7.280e-7 Identity = 97/253 (38.34%), Postives = 115/253 (45.45%), Query Frame = 2
Query: 2525 CEPGSTLIDLDNCGIEDEDLEDLIECFDNVGRTSVTTISMNSNSLTELPGGENGIFTGFDSL---------------------------ISLMLNQNNIETLYADSFKGLGGSLTSLSIIQSRLTTIPVGCFDNLVGLQSMRLYGNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESLTSSLDLSENEDLQCVPSLAGSPNYSAYEWNLPEGFGDGGTCSCPTSGDDGACESDESCSPGTDGYIC 3202
C+ G+ I CG+ DED++DL CFD GR ++ +S N L LP G +F G L SL LN N + + A+ F XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SLTS LDL N+DLQCVPS+AG+ S PEG G+ C+CP G D +C C PG GY C
Sbjct: 37 CQAGAAAISFVGCGLADEDMDDLGSCFDAAGRGTIAELSFQHNELDSLPSG---MFDGMSHLWSLDLGSXXXXXXXXXXXXXXXXXXXXXSLYLNDNTLSAVTAEDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADL-RSLTS-LDLRGNDDLQCVPSMAGT-KLSEVTLLAPEGVGE--MCACPGEGVDVSCLD---CEPGVGGYTC 278 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig812.16275.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig812.16275.1 >prot_E_fasciculatus_S2_contig812.16275.1 ID=prot_E_fasciculatus_S2_contig812.16275.1|Name=mRNA_E_fasciculatus_S2_contig812.16275.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=678bp MRVFTFALALWATGVANGTNPCLNPDHQSYQCSSGTTSISLTDYSCGNGWback to top mRNA from alignment at E_fasciculatus_S2_contig812:2303..27034+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig812.16275.1 ID=mRNA_E_fasciculatus_S2_contig812.16275.1|Name=mRNA_E_fasciculatus_S2_contig812.16275.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=24732bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig812:2303..27034+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig812:2303..27034+ >mRNA_E_fasciculatus_S2_contig812.16275.1 ID=mRNA_E_fasciculatus_S2_contig812.16275.1|Name=mRNA_E_fasciculatus_S2_contig812.16275.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2034bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig812:2303..27034+ (Ectocarpus fasciculatus EfasUO2)back to top |