prot_E_fasciculatus_S2_contig800.16170.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig800.16170.1
Unique Nameprot_E_fasciculatus_S2_contig800.16170.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length137
Homology
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 1.170e-66
Identity = 121/132 (91.67%), Postives = 125/132 (94.70%), Query Frame = 0
Query:    8 AEVNEKPPSL--LESKERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 137
            A+VN+KP S   LESKERYHFRASCLSNLAEVCQLLRWSLGR+S D+VDLAAGVLS ETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLG LDAAIRG
Sbjct: 1338 AQVNQKPSSSSSLESKERYHFRASCLSNLAEVCQLLRWSLGRFSCDVVDLAAGVLSTETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGCLDAAIRG 1469          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.070e-63
Identity = 113/122 (92.62%), Postives = 118/122 (96.72%), Query Frame = 0
Query:   16 SLLESKERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 137
            S LESKER HFRASCLSNLAEVCQLLRWSLGR+S+D+VDLAAGVLS ETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELR+AYRALKRAA SDRDE+TRSHARNGLGYLDAAIRG
Sbjct: 1301 SSLESKERCHFRASCLSNLAEVCQLLRWSLGRFSYDVVDLAAGVLSTETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRLAYRALKRAAGSDRDEITRSHARNGLGYLDAAIRG 1422          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.860e-29
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 0
Query:   18 LESKERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAI 135
            +E++ER HFRASCLSNLAEVC LLRWSL  Y+ D+VDLA G L++ETG  EE+T  RR +++LL R+L G G D   ++P   ++  YRAL+  A +  D V R HA+ GL  +DA +
Sbjct:  961 VETRERIHFRASCLSNLAEVCALLRWSLRPYARDVVDLALGALTLETGAGEEATHVRRASAYLLSRILAGTGSDAATIMPDL-IKPVYRALRIVASTVSDGVARFHAKAGLAEIDAIM 1077          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs. uniprot
Match: A0A7S3YE87_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE87_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 7.290e-20
Identity = 47/113 (41.59%), Postives = 72/113 (63.72%), Query Frame = 0
Query:   25 HFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 137
            +FR+SCLSNLAEVC LL+WSL RY+ DI DLA G+L ME   S+E+  ARRG+ +++ ++L          +  + ++  YR LK  A+SD D + + +A+  +  +D  +RG
Sbjct:  130 NFRSSCLSNLAEVCGLLKWSLDRYAQDIFDLALGILQMEGTNSQEALAARRGSLYIMYKILNSLDSTNFAGIIGSHIKSMYRRLKIVAKSDCDSLCKHNAQMCIDVIDVFMRG 242          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs. uniprot
Match: A0A6G0XAH2_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAH2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.140e-19
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 0
Query:   26 FRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 137
            FRASCLSNLAEVC LL+WS+  Y  D+V    G+L +    ++  T  RRGA FLL  +L+  GGD+ E+VP     + YR LK  A +++D V R HA   L  LD  +RG
Sbjct:  809 FRASCLSNLAEVCGLLKWSIQTYIADVVGCVKGILEIGRQNTDAHTALRRGAIFLLFHMLQMMGGDIFEIVPEYMSPI-YRLLKLEASTEKDPVCRYHADQSLALLDTLMRG 919          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs. uniprot
Match: A0A024U9C1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9C1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.560e-19
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 0
Query:    1 AAVNGGTAEVNEKPPS--LLESKERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 137
            A V+G    +   P +  + +S E   FRASCLSNLAEVC LL+W++  Y  D+V    G+L  E   ++     RRGA F+L  +L+  G D+LE +P A   + YR LK  A S+ D V R HA NG+  LD  +RG
Sbjct:  797 AFVHGYLGCIRRHPQATKMQDSLEEATFRASCLSNLAEVCGLLQWAIHPYITDVVACVRGILDTERLTTDAHIALRRGAVFVLYHMLQLFGRDILEAIPDAMTPI-YRLLKHEAASETDPVCRFHAENGVKELDTIMRG 934          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs. uniprot
Match: A0A485LCX3_9STRA (Aste57867_18971 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCX3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.880e-19
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 0
Query:   26 FRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 137
            FRASCLSNLAEVC LL+W++  Y  D+V    G+L +E   ++  T  RRGA FLL  +L+  G D+ E+VP   +   YR LK  A ++ D+V R HA+  L  LDA +RG
Sbjct:  802 FRASCLSNLAEVCGLLQWAIQPYIADVVGCVKGILEIERQPTDAHTALRRGAVFLLYHMLQLMGRDMFEIVPE-HMTPIYRLLKLEASTETDDVCRFHAQKSLSELDALMRG 912          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs. uniprot
Match: A0A397BHA7_9STRA (RTP1_C1 domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BHA7_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.440e-18
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 0
Query:   11 NEKPPSLLESKERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 137
            + K P+     E    RASCLSNLAEVC LL W++  Y  D+V    G+L  E   ++     RRGA F+L  +L+  G D+LE VP A   + YR LK  A +++D V R HA N +  LD  +RG
Sbjct:  529 SRKLPNDANEIEEATLRASCLSNLAEVCGLLHWAISPYITDVVGCVRGILETERLATDAHIALRRGAVFVLYNMLQLMGRDILEAVPDAMTPI-YRLLKMEASTEKDAVCRFHAENSVKALDTIMRG 654          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs. uniprot
Match: W4FL01_9STRA (RTP1_C1 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FL01_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.530e-18
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 0
Query:   11 NEKPPSLLESKERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 137
            + K P+     E    RASCLSNLAEVC LL W++  Y  D+V    G+L  E   ++     RRGA F+L  +L+  G D+LE VP A   + YR LK  A +++D V R HA N +  LD  +RG
Sbjct:  815 SRKLPNDANEIEETTLRASCLSNLAEVCGLLHWAISPYITDVVGCVRGILETERLATDAHIALRRGAVFVLYNMLQLMGRDILEAVPDAMTPI-YRLLKMEASTEKDAVCRFHAENSVKALDTIMRG 940          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs. uniprot
Match: A0A6A5B0I4_9STRA (RTP1_C1 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B0I4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.980e-18
Identity = 51/116 (43.97%), Postives = 67/116 (57.76%), Query Frame = 0
Query:   22 ERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 137
            E    RASCLSNLAEVC LL W++  Y  D+V    G+L  E   ++     RRGA F+L  +L+  G D+LE VP A   + YR LK  A +++D V R HA N +  LD  +RG
Sbjct:  271 EEATLRASCLSNLAEVCGLLHWAISPYITDVVGCVRGILETERLATDAHIALRRGAVFVLYNMLQLMGRDILEAVPDAMTPI-YRLLKMEASTEKDAVCRFHAENSVKALDTIMRG 385          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHX3_ECTSI1.170e-6691.67RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JPL2_9PHAE1.070e-6392.62RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YW23_9STRA5.860e-2951.69RTP1_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3YE87_HETAK7.290e-2041.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0XAH2_9STRA1.140e-1946.43RTP1_C1 domain-containing protein n=1 Tax=Aphanomy... [more]
A0A024U9C1_9STRA1.560e-1941.73Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485LCX3_9STRA2.880e-1946.43Aste57867_18971 protein n=1 Tax=Aphanomyces stella... [more]
A0A397BHA7_9STRA2.440e-1841.73RTP1_C1 domain-containing protein n=6 Tax=Aphanomy... [more]
W4FL01_9STRA2.530e-1841.73RTP1_C1 domain-containing protein n=3 Tax=Aphanomy... [more]
A0A6A5B0I4_9STRA3.980e-1843.97RTP1_C1 domain-containing protein n=2 Tax=Aphanomy... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019414RNA polymerase II assembly factor Rtp1, C-terminal domain 2PFAMPF10304RTP1_C2coord: 105..133
e-value: 1.1E-5
score: 25.0
IPR039600TANGO6/Rtp1PANTHERPTHR20959UNCHARACTERIZEDcoord: 23..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig800contigE_fasciculatus_S2_contig800:23576..23986 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig800.16170.1mRNA_E_fasciculatus_S2_contig800.16170.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig800 23576..23987 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig800.16170.1 ID=prot_E_fasciculatus_S2_contig800.16170.1|Name=mRNA_E_fasciculatus_S2_contig800.16170.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=137bp
AAVNGGTAEVNEKPPSLLESKERYHFRASCLSNLAEVCQLLRWSLGRYSH
DIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAE
LRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039600TANGO6/Rtp1
IPR019414Rtp1_C2