mRNA_E_fasciculatus_S2_contig800.16170.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig800.16170.1
Unique NamemRNA_E_fasciculatus_S2_contig800.16170.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs.
Match: RTP1_C1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 1.170e-66
Identity = 121/132 (91.67%), Postives = 125/132 (94.70%), Query Frame = 1
Query:   22 AEVNEKPPSL--LESKERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 411
            A+VN+KP S   LESKERYHFRASCLSNLAEVCQLLRWSLGR+S D+VDLAAGVLS ETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLG LDAAIRG
Sbjct: 1338 AQVNQKPSSSSSLESKERYHFRASCLSNLAEVCQLLRWSLGRFSCDVVDLAAGVLSTETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGCLDAAIRG 1469          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs.
Match: RTP1_C1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.070e-63
Identity = 113/122 (92.62%), Postives = 118/122 (96.72%), Query Frame = 1
Query:   46 SLLESKERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 411
            S LESKER HFRASCLSNLAEVCQLLRWSLGR+S+D+VDLAAGVLS ETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELR+AYRALKRAA SDRDE+TRSHARNGLGYLDAAIRG
Sbjct: 1301 SSLESKERCHFRASCLSNLAEVCQLLRWSLGRFSYDVVDLAAGVLSTETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRLAYRALKRAAGSDRDEITRSHARNGLGYLDAAIRG 1422          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs.
Match: RTP1_C1 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.860e-29
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 1
Query:   52 LESKERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAI 405
            +E++ER HFRASCLSNLAEVC LLRWSL  Y+ D+VDLA G L++ETG  EE+T  RR +++LL R+L G G D   ++P   ++  YRAL+  A +  D V R HA+ GL  +DA +
Sbjct:  961 VETRERIHFRASCLSNLAEVCALLRWSLRPYARDVVDLALGALTLETGAGEEATHVRRASAYLLSRILAGTGSDAATIMPDL-IKPVYRALRIVASTVSDGVARFHAKAGLAEIDAIM 1077          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE87_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 7.290e-20
Identity = 47/113 (41.59%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   73 HFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 411
            +FR+SCLSNLAEVC LL+WSL RY+ DI DLA G+L ME   S+E+  ARRG+ +++ ++L          +  + ++  YR LK  A+SD D + + +A+  +  +D  +RG
Sbjct:  130 NFRSSCLSNLAEVCGLLKWSLDRYAQDIFDLALGILQMEGTNSQEALAARRGSLYIMYKILNSLDSTNFAGIIGSHIKSMYRRLKIVAKSDCDSLCKHNAQMCIDVIDVFMRG 242          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs.
Match: RTP1_C1 (domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAH2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.140e-19
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   76 FRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 411
            FRASCLSNLAEVC LL+WS+  Y  D+V    G+L +    ++  T  RRGA FLL  +L+  GGD+ E+VP     + YR LK  A +++D V R HA   L  LD  +RG
Sbjct:  809 FRASCLSNLAEVCGLLKWSIQTYIADVVGCVKGILEIGRQNTDAHTALRRGAIFLLFHMLQMMGGDIFEIVPEYMSPI-YRLLKLEASTEKDPVCRYHADQSLALLDTLMRG 919          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9C1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.560e-19
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    1 AAVNGGTAEVNEKPPS--LLESKERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 411
            A V+G    +   P +  + +S E   FRASCLSNLAEVC LL+W++  Y  D+V    G+L  E   ++     RRGA F+L  +L+  G D+LE +P A   + YR LK  A S+ D V R HA NG+  LD  +RG
Sbjct:  797 AFVHGYLGCIRRHPQATKMQDSLEEATFRASCLSNLAEVCGLLQWAIHPYITDVVACVRGILDTERLTTDAHIALRRGAVFVLYHMLQLFGRDILEAIPDAMTPI-YRLLKHEAASETDPVCRFHAENGVKELDTIMRG 934          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs.
Match: Aste57867_18971 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCX3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.880e-19
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   76 FRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 411
            FRASCLSNLAEVC LL+W++  Y  D+V    G+L +E   ++  T  RRGA FLL  +L+  G D+ E+VP   +   YR LK  A ++ D+V R HA+  L  LDA +RG
Sbjct:  802 FRASCLSNLAEVCGLLQWAIQPYIADVVGCVKGILEIERQPTDAHTALRRGAVFLLYHMLQLMGRDMFEIVPE-HMTPIYRLLKLEASTETDDVCRFHAQKSLSELDALMRG 912          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs.
Match: RTP1_C1 (domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BHA7_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.440e-18
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   31 NEKPPSLLESKERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 411
            + K P+     E    RASCLSNLAEVC LL W++  Y  D+V    G+L  E   ++     RRGA F+L  +L+  G D+LE VP A   + YR LK  A +++D V R HA N +  LD  +RG
Sbjct:  529 SRKLPNDANEIEEATLRASCLSNLAEVCGLLHWAISPYITDVVGCVRGILETERLATDAHIALRRGAVFVLYNMLQLMGRDILEAVPDAMTPI-YRLLKMEASTEKDAVCRFHAENSVKALDTIMRG 654          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs.
Match: RTP1_C1 (domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FL01_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.530e-18
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   31 NEKPPSLLESKERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 411
            + K P+     E    RASCLSNLAEVC LL W++  Y  D+V    G+L  E   ++     RRGA F+L  +L+  G D+LE VP A   + YR LK  A +++D V R HA N +  LD  +RG
Sbjct:  815 SRKLPNDANEIEETTLRASCLSNLAEVCGLLHWAISPYITDVVGCVRGILETERLATDAHIALRRGAVFVLYNMLQLMGRDILEAVPDAMTPI-YRLLKMEASTEKDAVCRFHAENSVKALDTIMRG 940          
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs.
Match: RTP1_C1 (domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B0I4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.980e-18
Identity = 51/116 (43.97%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   64 ERYHFRASCLSNLAEVCQLLRWSLGRYSHDIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG 411
            E    RASCLSNLAEVC LL W++  Y  D+V    G+L  E   ++     RRGA F+L  +L+  G D+LE VP A   + YR LK  A +++D V R HA N +  LD  +RG
Sbjct:  271 EEATLRASCLSNLAEVCGLLHWAISPYITDVVGCVRGILETERLATDAHIALRRGAVFVLYNMLQLMGRDILEAVPDAMTPI-YRLLKMEASTEKDAVCRFHAENSVKALDTIMRG 385          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig800.16170.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RTP1_C11.170e-6691.67domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RTP1_C11.070e-6392.62domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RTP1_C15.860e-2951.69domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical7.290e-2041.59protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
RTP1_C11.140e-1946.43domain-containing protein n=1 Tax=Aphanomyces eute... [more]
Uncharacterized1.560e-1941.73protein n=1 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Aste57867_189712.880e-1946.43protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
RTP1_C12.440e-1841.73domain-containing protein n=6 Tax=Aphanomyces asta... [more]
RTP1_C12.530e-1841.73domain-containing protein n=3 Tax=Aphanomyces asta... [more]
RTP1_C13.980e-1843.97domain-containing protein n=2 Tax=Aphanomyces asta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig800contigE_fasciculatus_S2_contig800:23576..23987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score231.1
Seed ortholog evalue3.1e-58
Seed eggNOG ortholog2880.D7FHX3
Preferred nameTANGO6
Model size413
KEGG rclassRC00961
KEGG koko:K01763,ko:K08489
KEGG ReactionR03599
KEGG Pathwayko00450,ko01100,ko04130,map00450,map01100,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0032940,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594
Exons1
EggNOG free text desc.protein transport
EggNOG OGsKOG4653@1,KOG4653@2759
EC4.4.1.16
Cds size411
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842462.5365026-CDS-E_fasciculatus_S2_contig800:23575..239861696842462.5365026-CDS-E_fasciculatus_S2_contig800:23575..23986Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig800 23576..23986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig800.16170.1prot_E_fasciculatus_S2_contig800.16170.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig800 23576..23986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig800.16170.1

>prot_E_fasciculatus_S2_contig800.16170.1 ID=prot_E_fasciculatus_S2_contig800.16170.1|Name=mRNA_E_fasciculatus_S2_contig800.16170.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=137bp
AAVNGGTAEVNEKPPSLLESKERYHFRASCLSNLAEVCQLLRWSLGRYSH
DIVDLAAGVLSMETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAE
LRVAYRALKRAAESDRDEVTRSHARNGLGYLDAAIRG
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mRNA from alignment at E_fasciculatus_S2_contig800:23576..23987+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig800.16170.1 ID=mRNA_E_fasciculatus_S2_contig800.16170.1|Name=mRNA_E_fasciculatus_S2_contig800.16170.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=412bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig800:23576..23987+ (Ectocarpus fasciculatus EfasUO2)
GCCGCCGTCAACGGTGGCACCGCAGAGGTCAACGAGAAGCCGCCGTCTTT GCTGGAGAGCAAGGAGCGGTACCACTTCCGCGCCAGCTGCCTGTCCAACC TCGCCGAGGTGTGCCAGCTCCTCCGCTGGTCCCTCGGGCGTTACTCGCAC GACATCGTCGACCTCGCCGCCGGCGTCCTGTCGATGGAGACGGGGGGCTC CGAGGAATCGACCCTCGCCCGGCGGGGGGCGTCCTTCCTCCTGGGCCGGG TCCTGCGGGGAGCCGGCGGCGACGTCCTGGAGATGGTGCCGGCAGCGGAG CTGAGGGTCGCCTACCGAGCCCTCAAGCGCGCGGCGGAGAGCGACCGTGA CGAGGTCACCCGATCTCACGCCCGGAACGGGTTGGGCTATCTGGATGCCG CCATCCGTGGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig800:23576..23987+

>mRNA_E_fasciculatus_S2_contig800.16170.1 ID=mRNA_E_fasciculatus_S2_contig800.16170.1|Name=mRNA_E_fasciculatus_S2_contig800.16170.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=411bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig800:23576..23987+ (Ectocarpus fasciculatus EfasUO2)
GCCGCCGTCAACGGTGGCACCGCAGAGGTCAACGAGAAGCCGCCGTCTTT
GCTGGAGAGCAAGGAGCGGTACCACTTCCGCGCCAGCTGCCTGTCCAACC
TCGCCGAGGTGTGCCAGCTCCTCCGCTGGTCCCTCGGGCGTTACTCGCAC
GACATCGTCGACCTCGCCGCCGGCGTCCTGTCGATGGAGACGGGGGGCTC
CGAGGAATCGACCCTCGCCCGGCGGGGGGCGTCCTTCCTCCTGGGCCGGG
TCCTGCGGGGAGCCGGCGGCGACGTCCTGGAGATGGTGCCGGCAGCGGAG
CTGAGGGTCGCCTACCGAGCCCTCAAGCGCGCGGCGGAGAGCGACCGTGA
CGAGGTCACCCGATCTCACGCCCGGAACGGGTTGGGCTATCTGGATGCCG
CCATCCGTGGG
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