prot_E_fasciculatus_S2_contig7979.16133.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig7979.16133.1
Unique Nameprot_E_fasciculatus_S2_contig7979.16133.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length485
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7979.16133.1 vs. uniprot
Match: D7G2F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F0_ECTSI)

HSP 1 Score: 430 bits (1106), Expect = 5.350e-146
Identity = 248/277 (89.53%), Postives = 255/277 (92.06%), Query Frame = 0 
Query:  209 MSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAHGVGAAGGGTTVRDAADRAAARAAGIVLIPETPALASVLYAQLGVPKERVKRLLLKWPRLLEVSGYKVGQCIQWLTETVGMTKDQVAKLVLAHPPMVRKVVCSCPQLLVKSVSSNFVPKIRFFEQRLGIGRDGIGPMLVRYPQLFNFSLENMTWKARWLEEELLLDHIEVKKVFVRCPSVLAYSAERNLVPTLEFFLDELGATRRQVR 485
            MSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXXX            + A GVGA G   TVRDAAD+AAARAAGIVLIPETPALASVLYAQLGVPKERVKRLLLKWPRLLEVSGYKVGQC+QWLTETVGMTKDQVAKLVLAHPPM RKVVCSCPQLLVKSV SNF+PKI FFE+RLGIGRDGIGPMLVRYPQLFNFSL+NM WKARWLEEELLLDHIEVKKVFVRCPSVLAYSAERNLVPTLEFFLDELGATR+QVR
Sbjct:    1 MSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXXXPPSPGG------QHAGGVGAVG---TVRDAADQAAARAAGIVLIPETPALASVLYAQLGVPKERVKRLLLKWPRLLEVSGYKVGQCVQWLTETVGMTKDQVAKLVLAHPPMARKVVCSCPQLLVKSVPSNFMPKIIFFERRLGIGRDGIGPMLVRYPQLFNFSLKNMAWKARWLEEELLLDHIEVKKVFVRCPSVLAYSAERNLVPTLEFFLDELGATRQQVR 268
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BLAST of mRNA_E_fasciculatus_S2_contig7979.16133.1 vs. uniprot
Match: A0A6H5KP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP85_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 6.510e-54
Identity = 139/177 (78.53%), Postives = 143/177 (80.79%), Query Frame = 0 
Query:  168 ATSVGSNS-----VVGGTVAKPAEMTTSPDEDPTAAAHGFLAEFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAHGVGAAGGGTTVRDAADRAAARAAGIVLIPETPALASVLYAQLGVPKERVKRLLLKWPRLLE 339
            ATS GS+S     VVGGTVA+ AE T SP EDPTAAAHGFL EFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXX               A G GA G    VR+AAD+AAARAAGIVLIPETPALASVLYAQLGVPKERVK LLLKWPRLLE
Sbjct:    2 ATSAGSSSSTSISVVGGTVAERAE-TNSPYEDPTAAAHGFLTEFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXXAGAPSPGG-----EHAGGAGAVG---AVREAADQAAARAAGIVLIPETPALASVLYAQLGVPKERVKMLLLKWPRLLE 169
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BLAST of mRNA_E_fasciculatus_S2_contig7979.16133.1 vs. uniprot
Match: A0A7S2PVQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PVQ8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.340e-6
Identity = 31/115 (26.96%), Postives = 60/115 (52.17%), Query Frame = 0 
Query:  370 HPPMVRKVVCSCPQLLVKSVSSNFVPKIRFFEQRLGIGRDGIGPMLVRYPQLFNFSLENMTWKARWLEEELLLDHIEVKKVFVRCPSVLAYSAERNLVPTLEFFLDELGATRRQV 484
             P  VRK++ S PQ++  ++ ++  P   ++   +       G ++ R+P+LF++SL  +     +L  EL LD  +VK+V  + P ++  + E NL   L+     L  TR+++
Sbjct:  279 RPENVRKLLLSFPQVMDYNLENHLKPIADYYVSDVRFSATEFGSIVTRFPRLFSYSLFKIKHVTGFLRFELGLDATQVKRVIFQAPQIVGLNTEGNLQKKLDLLQTRLSLTRQEL 393
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7979.16133.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2F0_ECTSI5.350e-14689.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP85_9PHAE6.510e-5478.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2PVQ8_9STRA8.340e-626.96Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 328..359
e-value: 190.0
score: 9.6
coord: 375..407
e-value: 0.0042
score: 26.3
coord: 412..443
e-value: 50.0
score: 12.8
coord: 448..480
e-value: 2.7E-5
score: 33.6
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 316..374
e-value: 2.5E-5
score: 23.4
coord: 374..483
e-value: 8.8E-11
score: 41.3
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 310..374
e-value: 7.0E-6
score: 27.4
coord: 375..485
e-value: 2.6E-19
score: 71.4
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 316..439
coord: 429..479
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 429..479
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 316..439
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..485
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7979contigE_fasciculatus_S2_contig7979:1496..6829 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7979.16133.1mRNA_E_fasciculatus_S2_contig7979.16133.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig7979 1466..6829 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig7979.16133.1 ID=prot_E_fasciculatus_S2_contig7979.16133.1|Name=mRNA_E_fasciculatus_S2_contig7979.16133.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=485bp
MRPLCVLLLGGTYHPRVSSFLPPPAPSIPSSVLLNPPQQQQHPLRREARC
APSPRGASRRIRHRSGGSSSSTAAAGCWCGNAQGDTTRRKPTSPPAAFGR
RAVASVPRLRRAVRPSASQVEYAPLPPQSVACSAAAGDIIIQRASSRSSS
SSRRRRTSSSSSTIGATATSVGSNSVVGGTVAKPAEMTTSPDEDPTAAAH
GFLAEFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAAAAKAAE
EAAAAVIVASAGPPSLASGRGGEQRSAHGVGAAGGGTTVRDAADRAAARA
AGIVLIPETPALASVLYAQLGVPKERVKRLLLKWPRLLEVSGYKVGQCIQ
WLTETVGMTKDQVAKLVLAHPPMVRKVVCSCPQLLVKSVSSNFVPKIRFF
EQRLGIGRDGIGPMLVRYPQLFNFSLENMTWKARWLEEELLLDHIEVKKV
FVRCPSVLAYSAERNLVPTLEFFLDELGATRRQVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF