mRNA_E_fasciculatus_S2_contig7979.16133.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7979.16133.1
Unique NamemRNA_E_fasciculatus_S2_contig7979.16133.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7979.16133.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F0_ECTSI)

HSP 1 Score: 430 bits (1106), Expect = 7.580e-146
Identity = 248/277 (89.53%), Postives = 255/277 (92.06%), Query Frame = 1
Query:  655 MSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAHGVGAAGGGTTVRDAADRAAARAAGIVLIPETPALASVLYAQLGVPKERVKRLLLKWPRLLEVSGYKVGQCIQWLTETVGMTKDQVAKLVLAHPPMVRKVVCSCPQLLVKSVSSNFVPKIRFFEQRLGIGRDGIGPMLVRYPQLFNFSLENMTWKARWLEEELLLDHIEVKKVFVRCPSVLAYSAERNLVPTLEFFLDELGATRRQVR 1485
            MSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXXX            + A GVGA G   TVRDAAD+AAARAAGIVLIPETPALASVLYAQLGVPKERVKRLLLKWPRLLEVSGYKVGQC+QWLTETVGMTKDQVAKLVLAHPPM RKVVCSCPQLLVKSV SNF+PKI FFE+RLGIGRDGIGPMLVRYPQLFNFSL+NM WKARWLEEELLLDHIEVKKVFVRCPSVLAYSAERNLVPTLEFFLDELGATR+QVR
Sbjct:    1 MSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXXXPPSPGG------QHAGGVGAVG---TVRDAADQAAARAAGIVLIPETPALASVLYAQLGVPKERVKRLLLKWPRLLEVSGYKVGQCVQWLTETVGMTKDQVAKLVLAHPPMARKVVCSCPQLLVKSVPSNFMPKIIFFERRLGIGRDGIGPMLVRYPQLFNFSLKNMAWKARWLEEELLLDHIEVKKVFVRCPSVLAYSAERNLVPTLEFFLDELGATRQQVR 268          
BLAST of mRNA_E_fasciculatus_S2_contig7979.16133.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP85_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 8.140e-54
Identity = 139/177 (78.53%), Postives = 143/177 (80.79%), Query Frame = 1
Query:  532 ATSVGSNS-----VVGGTVAKPAEMTTSPDEDPTAAAHGFLAEFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAHGVGAAGGGTTVRDAADRAAARAAGIVLIPETPALASVLYAQLGVPKERVKRLLLKWPRLLE 1047
            ATS GS+S     VVGGTVA+ AE T SP EDPTAAAHGFL EFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXX               A G GA G    VR+AAD+AAARAAGIVLIPETPALASVLYAQLGVPKERVK LLLKWPRLLE
Sbjct:    2 ATSAGSSSSTSISVVGGTVAERAE-TNSPYEDPTAAAHGFLTEFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAXXXXXXXXXXXXXXXXXXAGAPSPGG-----EHAGGAGAVG---AVREAADQAAARAAGIVLIPETPALASVLYAQLGVPKERVKMLLLKWPRLLE 169          
BLAST of mRNA_E_fasciculatus_S2_contig7979.16133.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV2_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.580e-32
Identity = 80/133 (60.15%), Postives = 92/133 (69.17%), Query Frame = -3
Query:   20 LTAVVVVRIQLVTQKVALPVAIAERSLPPAARTPPAATWVFAWWYRLGRCRTSIRQPLCCCCYRRCGV*YAWTHHAERGRIALLAAEGAAAAVADSAKRTRESTVRVEAENSIREGGKFHRAGGHTAAASCVC 418
            +  VVVVR++ VTQK ALPVA AE SL PA RT  A TW+F WW+R G C T+ RQ   C  YR C V Y WT+ AE+  IALL A GAAA    SA++TR+STVRVE ENS R GG F   GGHTAA+SCVC
Sbjct:    1 MLTVVVVRVEPVTQKYALPVATAENSLLPA-RTLRAVTWIFVWWHRPGWC-TNTRQRRHCG-YRCCDVLYVWTYDAEKEHIALLVARGAAAG---SAQQTRKSTVRVEVENSTRVGGTFRPEGGHTAASSCVC 127          
BLAST of mRNA_E_fasciculatus_S2_contig7979.16133.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PVQ8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.650e-6
Identity = 31/115 (26.96%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 1138 HPPMVRKVVCSCPQLLVKSVSSNFVPKIRFFEQRLGIGRDGIGPMLVRYPQLFNFSLENMTWKARWLEEELLLDHIEVKKVFVRCPSVLAYSAERNLVPTLEFFLDELGATRRQV 1482
             P  VRK++ S PQ++  ++ ++  P   ++   +       G ++ R+P+LF++SL  +     +L  EL LD  +VK+V  + P ++  + E NL   L+     L  TR+++
Sbjct:  279 RPENVRKLLLSFPQVMDYNLENHLKPIADYYVSDVRFSATEFGSIVTRFPRLFSYSLFKIKHVTGFLRFELGLDATQVKRVIFQAPQIVGLNTEGNLQKKLDLLQTRLSLTRQEL 393          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7979.16133.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized7.580e-14689.53protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.140e-5478.53protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.580e-3260.15protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical8.650e-626.96protein (Fragment) n=1 Tax=Skeletonema marinoi Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7979contigE_fasciculatus_S2_contig7979:1466..6829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score432.6
Seed ortholog evalue2.5e-118
Seed eggNOG ortholog2880.D7G2F0
Model size1485
KEGG koko:K15031,ko:K15032
Hectar predicted targeting categorychloroplast
Exons6
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-24_001740.1
Cds size1455
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7979.16133.1prot_E_fasciculatus_S2_contig7979.16133.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7979 1496..6829 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842457.7279255-UTR-E_fasciculatus_S2_contig7979:1465..14951696842457.7279255-UTR-E_fasciculatus_S2_contig7979:1465..1495Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7979 1466..1495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842457.7460852-CDS-E_fasciculatus_S2_contig7979:1495..21311696842457.7460852-CDS-E_fasciculatus_S2_contig7979:1495..2131Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7979 1496..2131 +
1696842457.7593977-CDS-E_fasciculatus_S2_contig7979:2903..32841696842457.7593977-CDS-E_fasciculatus_S2_contig7979:2903..3284Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7979 2904..3284 +
1696842457.7798254-CDS-E_fasciculatus_S2_contig7979:4554..46561696842457.7798254-CDS-E_fasciculatus_S2_contig7979:4554..4656Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7979 4555..4656 +
1696842457.7958918-CDS-E_fasciculatus_S2_contig7979:5856..59971696842457.7958918-CDS-E_fasciculatus_S2_contig7979:5856..5997Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7979 5857..5997 +
1696842457.8055756-CDS-E_fasciculatus_S2_contig7979:6303..64411696842457.8055756-CDS-E_fasciculatus_S2_contig7979:6303..6441Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7979 6304..6441 +
1696842457.8145733-CDS-E_fasciculatus_S2_contig7979:6772..68291696842457.8145733-CDS-E_fasciculatus_S2_contig7979:6772..6829Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7979 6773..6829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7979.16133.1

>prot_E_fasciculatus_S2_contig7979.16133.1 ID=prot_E_fasciculatus_S2_contig7979.16133.1|Name=mRNA_E_fasciculatus_S2_contig7979.16133.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=485bp
MRPLCVLLLGGTYHPRVSSFLPPPAPSIPSSVLLNPPQQQQHPLRREARC
APSPRGASRRIRHRSGGSSSSTAAAGCWCGNAQGDTTRRKPTSPPAAFGR
RAVASVPRLRRAVRPSASQVEYAPLPPQSVACSAAAGDIIIQRASSRSSS
SSRRRRTSSSSSTIGATATSVGSNSVVGGTVAKPAEMTTSPDEDPTAAAH
GFLAEFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAAAAKAAE
EAAAAVIVASAGPPSLASGRGGEQRSAHGVGAAGGGTTVRDAADRAAARA
AGIVLIPETPALASVLYAQLGVPKERVKRLLLKWPRLLEVSGYKVGQCIQ
WLTETVGMTKDQVAKLVLAHPPMVRKVVCSCPQLLVKSVSSNFVPKIRFF
EQRLGIGRDGIGPMLVRYPQLFNFSLENMTWKARWLEEELLLDHIEVKKV
FVRCPSVLAYSAERNLVPTLEFFLDELGATRRQVR
back to top

mRNA from alignment at E_fasciculatus_S2_contig7979:1466..6829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7979.16133.1 ID=mRNA_E_fasciculatus_S2_contig7979.16133.1|Name=mRNA_E_fasciculatus_S2_contig7979.16133.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5364bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7979:1466..6829+ (Ectocarpus fasciculatus EfasUO2)
ATTCTGCTTGGAGAAACACACACACACACGATGCGGCCGCTGTGTGTCCT CCTGCTCGGTGGAACTTACCACCCTCGCGTATCGAGTTTTCTGCCTCCAC CCGCACCGTCGATTCCCTCGTCCGTTTTGCTGAATCCGCCACAGCAGCAG CAGCACCCTCTGCGGCGAGAAGCGCGATGCGCCCCCTCTCCGCGTGGTGC GTCCAGGCGTATCAGACACCGCAGCGGCGGTAGCAGCAGCAGCACAGCGG CTGCCGGATGCTGGTGCGGCAACGCCCAAGGCGATACCACCAGGCGAAAA CCCACGTCGCCGCCGGCGGCGTTCGGGCGGCGGGCGGTAGCGAGCGTTCC GCGATTGCGACGGGCAGTGCGACCTTCTGCGTCACAAGTTGAATACGCAC CACTACCACCGCAGTCAGTAGCATGTTCTGCGGCGGCTGGCGATATCATC ATCCAGCGCGCCAGCAGTCGCAGCAGCAGCAGCAGCAGAAGAAGAAGAAC CAGCAGCAGTAGCAGCACCATCGGAGCGACAGCCACCAGTGTCGGCAGCA ATTCGGTGGTTGGCGGGACTGTTGCGAAGCCGGCGGAGATGACGACTAGC CCGGACGAGGATCCCACAGCGGCGGCGCATGGTTTCCTTGCCGAGTTCCT GGACATGAGCGAGGAGGTGGGTGGGGGGCATGATGCCGCAGCAACAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGT GGCACTGCTTTGCTGTGAATCGTTTGTTGGATTGTGTGCTGCATGATGTT GGACAGAGCATGTCCTTACTGCCTTCAGCAGTCGTCCCAACTACGTGTCT GTTGGGACAGATAGCATACGTCGTGTGCGTGTGCGTACAGCAGTAGAGCA ACAACGCCATGACGTGCCGACGAGCGTCTACAAACCATACAGTTACCCAC AACGCTGCAATGCTTGTTTGCGTCTACGCAACCTGTTGTTATCCAATACA TGAGTCCGAACATGGGTATTGCCGCATCATTGTTTGCTGCCACGATTCGG TCCGACTACACAGGCAGTACCGAGCAGTTACCTTTGAGATTTCCTGAGCC CAAAAGCCTTCCCAAACCTAGCGATCATAGCTGCGACGTCTGTTGTGAGT CACCGCAGGACGGAATGGCTGCGAAACATGTTCCGTGAGCTTTTAAGATT TGGCAGCCCTTTGTTTCCTGCTGTCTTGTCGCTCGCCGGTGCCTTGCCGC TCTGGTGGCTGCACGGCAAGTCGATTCAATCACACACCGCACAGACACAT GCGGCCCGTTTCCGCGGAACAGCAGCGTGAGACGATCTTGGGACACCCTC CCCCCAACCTCCCCCCCCTTACCGCCTCGCCTGACCAGGAACTCCGGCAG CTGTCAGCCAAGTACCAGTCGTTACCCCCCGGCCGAAGAGGGCCCGACGA GATCACGGTAGCCGGGCCGGAGCTCGCCGCCGCCGCCGCGAAGGCCGCCG AGGAGGCCGCAGCCGCAGTTATCGTCGCATCTGCGGGGCCCCCTTCGCTT GCTTCCGGCCGCGGGGGGGAGCAACGCTCCGCCCACGGAGTTGGGGCGGC GGGGGGGGGGACTACTGTGAGAGACGCGGCGGACAGGGCGGCGGCGAGGG CGGCGGGCATCGTGCTGATACCGGAGACCCCCGCGCTGGCATCAGTGCTG TACGCACAGCTGGGCGTCCCGAAGGAGAGGGTGAAGCGGTTGCTCCTCAA GTGGCCCAGGCTGCTGGAGGTGAGGCGAAGTCTTGCGTATCGTTGCCGAC CTTCCTTCCTTCAACAACACACGAGAAGGGGGGGGGAGGCGTACTCATGT TGCGCATGCCGTTGCTGTAAGATCGTTGACCGCGCGTCCTCGAGAGGCAG GGCGAGTTCGGGATCGTCGTGTAAAACCGCGCTGGCTTTCATATCGCACG CATATATAACGTTGGCGCAGTTGAGGACGATTTCTATCTGTATCCTAGCA TGGAAGATCCGCTTTTCATGCTGACGAGTGGGATCAGGCCATTGCTGCGT TGAGGATATGGTGTTCGCGAAGCTGCGGGGAAAGGTAGGGGGACGAGGGC GAGGGAGCAGGGGAAGACGAGGCCGCAATCTGCTGATATCTGGTTGCAGC AATAATTGGTTGTCGCAGAACGTTGTTGAGTGAACCCGCTGAGCGGGTGA GATGAAGGGGACGGCCGGAATAGAACGCCTGACGGAGGGAGGGGTGATCA GAATTGATCAATTTTCTCCCAGCAATTTGAAAGGAATTCCTCTCTTGAGG GAAAGACGTGGAGTCAGAGGTAGGATACACAGATCGGCCCGCGAGCGTGC CGACAGAATACGCCGGAAAAACAGCCGTGGTCTCCTTTTCCAAGAGCACG TCAGTAGTCTCACCCGTCAACAATTTTCGGAATGGCTGCGTGCGCGGGCA AAGCACAAAAGCTCCCATATGGGGCCTGTGTTCGGAAGCGAGGCATTTAT CACCGGTTGAATGACCCCGACTTTTCGGCTAAGCTCGAATGAACGCCGAC GCCCGCTGTCAAGCGGAGTCAGACTCAATCCGCAAACCCTGTAAAGCAAG CGAGTATTGAAAGGGACTCAGGCAGACCAGGCAACACAATTCTGTGTCCG CGGCGTGGCCAGAGAGCGTTCAGGGGCACCGCATGTTCGGTACGAGGAAC GATGCTCGCCCCCCTCCGAAACGCGCGCTGTTTGCTCGGCGAAAAATCTC TCTTGAGGATGTTCCGAAAAGAGGCTGACCCCCTTCTCCCCTCGCACCCC CCGGTGGTCCCGTCCAAAAGCGCTCGACTGGTATATTTTTTCCTCCCATT GCGAGGCCAATGGCCTAACGACTACGGCATGCATGGCCATGAGTACCCCC CCCCCCGTCCTGTCCTGTCCTGTGGGTACAATGCCCCGTCCTGTCGAGGA CGCGTGGTCGATGGTCTAACGTCTAAGGCATGCAAACCATGAGAGTCCCC ACCCCCCCCCGGTGTGGCTATCCCTCGACGGCGTCTCAGGTGTCGGGGTA CAAGGTGGGACAGTGCATCCAGTGGCTGACGGAGACGGTAGGGATGACGA AGGACCAAGTGGCCAAGCTCGTCCTGGCACACCCTCCGATGGTGAGCGGT TTGATTGATAACCCGCCGTGCTGAACCTTTGATGCCGTGAGGGGCGGAGA GATGGCACCCCCGGTAGACCGTCTTTCCAAAGCTATTACAATATCGATTG CTCCACAACCAAACGGGTGCTGAAAGAGACCCGATGCGAGCCCTCGACGG GATGCTTCCAAAACCACCATTATTGGTGTTGGCACAATCAAGCTTGCTTG TCGTGGAGCATTCGAGCTTTGACAATCGGTGTGTGTGGGGGGGTATCTCT TCACCTCTTACAACGGTAACCTCGGTAAGCCCGGTGTTCTTGATGCCTGT CTGACCATTCCTTGGTTGCCCCGCTGGGTGTGATGTTTGAGCTTCGTTTG GGTGGTGCGCTGGATAGAGACCGTTGTTCCCCGTCGGGTGTGAGACTACT GTCTCCTGTCTCGACCATATGTGACATCGAAGAAGGCTTCCTACGTGAGC CGCGATTCACGGCCCCCTTTCATCGAGGTGTGTAGGTTGTCATCGTGATA CGCTTGGCTTGGTTGGCTGGGAACAACGGCCTGGCTGGCGAAAATTACTT TGGACGGAAATGTCACGCCAGTCACAGGTACCTTGAGCTCTTTCTCTTTT CGAGATGTAGGGACTGATTTTAGTTGTGGTTTCGTCGTTCTTTGAGAATT TTTGCTTGGGCCAACACACCACATGATTCCAACCACTGCCGCGGCAGCAT GGCTGTTCGCGAAAAGGACGTCATCTTCATTGCTCACACGTCACCCGTTT GTTTCACCCCCTCCGCGTCTGCCCCCGCCGCGCAGTTCATAAAGAGCGTC AACTTCCAGCTCAAGCCTAACCTCTACTGGCTCGAGAACGACCTCGGCCT CACAAGGGGAGAGGTGCGTGCCGCATGTAACGGACCCCCCCCCCGTGCCG GCAGCAAGAGTGACACGAGTTTTTTGGAGGAAAAACTGTGGAAAAACCAG CCGTATTTGAAAGCCCCTGACATCACGCATGGTCTACTCCCCGCCCCCAC CGCCGTGGACGGCCTTCGCAGGAATTGAACTATTATGAAGACACAGAGCG GGGAGGGGGCACGCAGACCTTAACCCTAGCCCTTTTCCCTAGCCCGACTT CCCCGATTGCATGCTTTATCCAACATGTTGACGTCATACAACAAGCTTGC GAAGGCTACTGACCGCAGCCGCATTTTCGGGGTCCCCGCAGGTGCGGAAG GTGGTGTGTTCGTGCCCACAGTTGCTGGTGAAGAGCGTGTCGTCCAACTT CGTGCCCAAGATTCGTTTCTTCGAGCAGAGGCTGGGGATTGGCAGAGATG GGATCGGGCCCATGCTGGTCCGGTACCCCCAGGTGTGGTGACGGTTGTCG CTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCGTCTGGTTACATTTTGC GGTGCCCGTTGTTCTTGACCCTCCTCTACTCGTTTGTATCCCGGTCGTCC ATTGTCGTGCCCCCTCTGTTCAACTTCTTCCCTCAGGTGTGACGACGGGT GTTCCTGCGGTGTTGTAGTTGTTGTTGTTGTTATTGTTGTTGTTGGGGTT GGTGTTTGCCTGTTTACATTTTGCGATCACATTTGGTCTTCACCCCCCGC TCCTCATTTGTATCTCGGGCGTCCGTTTGTCGTTGCAGCTGTTCAACTTC AGCTTGGAGAACATGACGTGGAAGGCGCGGTGGTTGGAGGAGGAGCTGCT GCTGGACCACATCGAGGTTAAGAAAGTGTTTGTGCGATGTCCATCCGTGT TGGCCTACAGCGCGGAAAGAAATCTGGTGAGAACAGAAGCCAAGAACGGG CAAATGAGCGACAGAGAGAAGAGGGAGAGGGGGATAGAAAGCCTACTCCG GTCTAATCAAGCAAGTGATTTCGAAAAGCCCCCCCCTCCGGTTTGCTTGC TCAGATCGCTTCTCTACTCGGCTTCGGTTCTCTGGTTATTTTTTTCGGCG TAGATCTTGGGGCCGTTGTGCAGCGATCTACTCTCGCGTGTCCTGTTACC GCCTCCTGAATTAATTCACGTGGTTCTTGTAGATCTTGGGGAACTTGTGC ACTTTTTTCCTTTGATACCGCTCCCTGAGTTCACGCGGTTCTGGTTTTTT CCAACAGGTTCCGACGCTGGAGTTCTTTTTGGACGAGCTCGGGGCGACAA GGCGGCAGGTGCGT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7979:1466..6829+

>mRNA_E_fasciculatus_S2_contig7979.16133.1 ID=mRNA_E_fasciculatus_S2_contig7979.16133.1|Name=mRNA_E_fasciculatus_S2_contig7979.16133.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1455bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7979:1466..6829+ (Ectocarpus fasciculatus EfasUO2)
ATGCGGCCGCTGTGTGTCCTCCTGCTCGGTGGAACTTACCACCCTCGCGT
ATCGAGTTTTCTGCCTCCACCCGCACCGTCGATTCCCTCGTCCGTTTTGC
TGAATCCGCCACAGCAGCAGCAGCACCCTCTGCGGCGAGAAGCGCGATGC
GCCCCCTCTCCGCGTGGTGCGTCCAGGCGTATCAGACACCGCAGCGGCGG
TAGCAGCAGCAGCACAGCGGCTGCCGGATGCTGGTGCGGCAACGCCCAAG
GCGATACCACCAGGCGAAAACCCACGTCGCCGCCGGCGGCGTTCGGGCGG
CGGGCGGTAGCGAGCGTTCCGCGATTGCGACGGGCAGTGCGACCTTCTGC
GTCACAAGTTGAATACGCACCACTACCACCGCAGTCAGTAGCATGTTCTG
CGGCGGCTGGCGATATCATCATCCAGCGCGCCAGCAGTCGCAGCAGCAGC
AGCAGCAGAAGAAGAAGAACCAGCAGCAGTAGCAGCACCATCGGAGCGAC
AGCCACCAGTGTCGGCAGCAATTCGGTGGTTGGCGGGACTGTTGCGAAGC
CGGCGGAGATGACGACTAGCCCGGACGAGGATCCCACAGCGGCGGCGCAT
GGTTTCCTTGCCGAGTTCCTGGACATGAGCGAGGAGGAACTCCGGCAGCT
GTCAGCCAAGTACCAGTCGTTACCCCCCGGCCGAAGAGGGCCCGACGAGA
TCACGGTAGCCGGGCCGGAGCTCGCCGCCGCCGCCGCGAAGGCCGCCGAG
GAGGCCGCAGCCGCAGTTATCGTCGCATCTGCGGGGCCCCCTTCGCTTGC
TTCCGGCCGCGGGGGGGAGCAACGCTCCGCCCACGGAGTTGGGGCGGCGG
GGGGGGGGACTACTGTGAGAGACGCGGCGGACAGGGCGGCGGCGAGGGCG
GCGGGCATCGTGCTGATACCGGAGACCCCCGCGCTGGCATCAGTGCTGTA
CGCACAGCTGGGCGTCCCGAAGGAGAGGGTGAAGCGGTTGCTCCTCAAGT
GGCCCAGGCTGCTGGAGGTGTCGGGGTACAAGGTGGGACAGTGCATCCAG
TGGCTGACGGAGACGGTAGGGATGACGAAGGACCAAGTGGCCAAGCTCGT
CCTGGCACACCCTCCGATGGTGCGGAAGGTGGTGTGTTCGTGCCCACAGT
TGCTGGTGAAGAGCGTGTCGTCCAACTTCGTGCCCAAGATTCGTTTCTTC
GAGCAGAGGCTGGGGATTGGCAGAGATGGGATCGGGCCCATGCTGGTCCG
GTACCCCCAGCTGTTCAACTTCAGCTTGGAGAACATGACGTGGAAGGCGC
GGTGGTTGGAGGAGGAGCTGCTGCTGGACCACATCGAGGTTAAGAAAGTG
TTTGTGCGATGTCCATCCGTGTTGGCCTACAGCGCGGAAAGAAATCTGGT
TCCGACGCTGGAGTTCTTTTTGGACGAGCTCGGGGCGACAAGGCGGCAGG
TGCGT
back to top