prot_E_fasciculatus_S2_contig7825.15994.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig7825.15994.1
Unique Name	prot_E_fasciculatus_S2_contig7825.15994.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	347

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs. uniprot
Match: A0A6H5KV94_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV94_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.420e-50
Identity = 177/244 (72.54%), Postives = 182/244 (74.59%), Query Frame = 0

Query:  100 TDASGQGPTTTVQQAGPLSPSLDGAAPAPXXXXXXXGVEGATGGGAAVLATASGPETTPA------PAGXXXXXXXXXXXXXXXQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPASTASPNGVAAPASTXXXXXXXXXXXXXXXXGGQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLANDEREAYRTRXXXXXXXYKAEQADKPVVKKEEFYSNDEKGQSTELVCPMG 337
            TDA+ Q PTT VQQAGPLS  LDGAAPA        GVEG TG              TPA         XXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXX     VGP S A  +G+ A    XXXXXXXXXXXXXXXX  QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLA+DEREAYRTR       YKAEQADKPVVKKEEFY+NDEKGQSTELVCPMG
Sbjct:   96 TDATVQNPTTIVQQAGPLSLGLDGAAPASGGGGSGVGVEGVTGXXXXXXXXXXXXXXTPAVPVPVAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGAGVGPISAAGSDGILAAXXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQSTELVCPMG 339

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BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs. uniprot
Match: D7G2P1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P1_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.980e-44
Identity = 84/93 (90.32%), Postives = 86/93 (92.47%), Query Frame = 0

Query:  245 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLANDEREAYRTRXXXXXXXYKAEQADKPVVKKEEFYSNDEKGQSTELVCPMG 337
            QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLA+DEREAYRTR       YKAEQADKPVVKKEEFY+NDEKGQSTELVCPMG
Sbjct:  140 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQSTELVCPMG 232

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BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs. uniprot
Match: L1J476_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J476_GUITC)

HSP 1 Score: 54.7 bits (130), Expect = 2.580e-5
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 0

Query:  243 GGQSK-PQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLANDEREAYRTRXXXXXXXYKAEQA 310
            GG+ K P SAW+LF + +R++VKRDNP+IA T+  K+++  WK L  +E++ +          YK ++A
Sbjct:    3 GGRPKRPMSAWLLFCEAKRDEVKRDNPEIAFTEINKVIAGKWKALTEEEKKPFEEEAAKRFEEYKGKKA 71

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5KV94_9PHAE	2.420e-50	72.54	HMG box domain-containing protein n=1 Tax=Ectocarp...	[more]
D7G2P1_ECTSI	2.980e-44	90.32	HMG box domain-containing protein n=1 Tax=Ectocarp...	[more]
L1J476_GUITC	2.580e-5	39.13	Uncharacterized protein n=2 Tax=Guillardia theta T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 244..314 e-value: 1.2E-14 score: 64.6
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 246..310 e-value: 5.6E-15 score: 55.5
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 245..313 score: 15.31
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10		coord: 231..312 e-value: 2.1E-16 score: 61.9
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 233..309
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 247..312
None	No IPR available	PANTHER	PTHR13711:SF302	HIGH MOBILITY GROUP PROTEIN DSP1-RELATED	coord: 247..312
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 25..346
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig7825	contig	E_fasciculatus_S2_contig7825:49..2801 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig7825.15994.1	mRNA_E_fasciculatus_S2_contig7825.15994.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig7825 49..2801 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig7825.15994.1 ID=prot_E_fasciculatus_S2_contig7825.15994.1|Name=mRNA_E_fasciculatus_S2_contig7825.15994.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=347bp
MADTGGAGASASSLVAAAAASAVAASTFATADGGGDGGSGGNGTSSPAPA
EPQAAAAAAAAAAVSGSSSPQLPPMSHSVSNAAAAAAAAAAAATTTAPPT
DASGQGPTTTVQQAGPLSPSLDGAAPAPGGGGSGVGVEGATGGGAAVLAT
ASGPETTPAPAGPAPATPAAATPAAEPQTTETSAVPAVAAVAAAPTAPAP
AAGAAGAGVGPASTASPNGVAAPASTTGGGAGTSSGKKRASSGGQSKPQS
AWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLANDEREAYRTRARD
DQKRYKAEQADKPVVKKEEFYSNDEKGQSTELVCPMGEPVPRLLWL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036910	HMG_box_dom_sf
IPR009071	HMG_box_dom