prot_E_fasciculatus_S2_contig7825.15994.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig7825.15994.1
Unique Nameprot_E_fasciculatus_S2_contig7825.15994.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length347
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs. uniprot
Match: A0A6H5KV94_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV94_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.420e-50
Identity = 177/244 (72.54%), Postives = 182/244 (74.59%), Query Frame = 0 
Query:  100 TDASGQGPTTTVQQAGPLSPSLDGAAPAPXXXXXXXGVEGATGGGAAVLATASGPETTPA------PAGXXXXXXXXXXXXXXXQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPASTASPNGVAAPASTXXXXXXXXXXXXXXXXGGQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLANDEREAYRTRXXXXXXXYKAEQADKPVVKKEEFYSNDEKGQSTELVCPMG 337
            TDA+ Q PTT VQQAGPLS  LDGAAPA        GVEG TG              TPA         XXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXX     VGP S A  +G+ A    XXXXXXXXXXXXXXXX  QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLA+DEREAYRTR       YKAEQADKPVVKKEEFY+NDEKGQSTELVCPMG
Sbjct:   96 TDATVQNPTTIVQQAGPLSLGLDGAAPASGGGGSGVGVEGVTGXXXXXXXXXXXXXXTPAVPVPVAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGAGVGPISAAGSDGILAAXXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQSTELVCPMG 339
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs. uniprot
Match: D7G2P1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P1_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.980e-44
Identity = 84/93 (90.32%), Postives = 86/93 (92.47%), Query Frame = 0 
Query:  245 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLANDEREAYRTRXXXXXXXYKAEQADKPVVKKEEFYSNDEKGQSTELVCPMG 337
            QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLA+DEREAYRTR       YKAEQADKPVVKKEEFY+NDEKGQSTELVCPMG
Sbjct:  140 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAEQADKPVVKKEEFYTNDEKGQSTELVCPMG 232
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs. uniprot
Match: L1J476_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J476_GUITC)

HSP 1 Score: 54.7 bits (130), Expect = 2.580e-5
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 0 
Query:  243 GGQSK-PQSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLANDEREAYRTRXXXXXXXYKAEQA 310
            GG+ K P SAW+LF + +R++VKRDNP+IA T+  K+++  WK L  +E++ +          YK ++A
Sbjct:    3 GGRPKRPMSAWLLFCEAKRDEVKRDNPEIAFTEINKVIAGKWKALTEEEKKPFEEEAAKRFEEYKGKKA 71
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7825.15994.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KV94_9PHAE2.420e-5072.54HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
D7G2P1_ECTSI2.980e-4490.32HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
L1J476_GUITC2.580e-539.13Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 244..314
e-value: 1.2E-14
score: 64.6
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 246..310
e-value: 5.6E-15
score: 55.5
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 245..313
score: 15.31
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 231..312
e-value: 2.1E-16
score: 61.9
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 233..309
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 247..312
NoneNo IPR availablePANTHERPTHR13711:SF302HIGH MOBILITY GROUP PROTEIN DSP1-RELATEDcoord: 247..312
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..346
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7825contigE_fasciculatus_S2_contig7825:49..2801 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7825.15994.1mRNA_E_fasciculatus_S2_contig7825.15994.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig7825 49..2801 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig7825.15994.1 ID=prot_E_fasciculatus_S2_contig7825.15994.1|Name=mRNA_E_fasciculatus_S2_contig7825.15994.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=347bp
MADTGGAGASASSLVAAAAASAVAASTFATADGGGDGGSGGNGTSSPAPA
EPQAAAAAAAAAAVSGSSSPQLPPMSHSVSNAAAAAAAAAAAATTTAPPT
DASGQGPTTTVQQAGPLSPSLDGAAPAPGGGGSGVGVEGATGGGAAVLAT
ASGPETTPAPAGPAPATPAAATPAAEPQTTETSAVPAVAAVAAAPTAPAP
AAGAAGAGVGPASTASPNGVAAPASTTGGGAGTSSGKKRASSGGQSKPQS
AWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLANDEREAYRTRARD
DQKRYKAEQADKPVVKKEEFYSNDEKGQSTELVCPMGEPVPRLLWL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom