prot_E_fasciculatus_S2_contig6781.14905.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig6781.14905.1
Unique Name	prot_E_fasciculatus_S2_contig6781.14905.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	620

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig6781.14905.1 vs. uniprot
Match: A0A6H5K714_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K714_9PHAE)

HSP 1 Score: 778 bits (2008), Expect = 4.450e-267
Identity = 549/738 (74.39%), Postives = 556/738 (75.34%), Query Frame = 0

Query:    1 REARALCLELLLRSKGDEEVMKAFVDRRGLLFIKGWLAEETKSINMMKLLLTVAKVLPVTYSSLMQSDAGKALKALNKHADSGIRKQAKAVISHWRTALVGDKGEIAKHRKQLDDLHDKLKAEQDAEKKAKTEAADAEKRRRDLARAQSRPPNG---------------------------------------------------------------------------------------------------------------FAGRGPGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILKVTAVPTVATAGGQDGATAGGVAAAAVATDGEGXXXXXXXXXXXXXXXXXXX-----APAASGVAGVGSGPPPIVSLDEMARAESEEKKRLRKAKPAGKKVGWADRAGRTLQVVKEFHSEDSATAVSETPQESDSVVAATMASHHADHRHWAERVKREREMERKFHGKGGGRSKGK--HGSRANAGDEXXXXXXXXXXXXXXXXXXXXXXXXXXXKPMVTTVAWRRPGPYEKGVVHEDVLQLEVDSSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDEVQMYKIPFYMESELEQMQAEAPKEQQQQQPPANQPGPVKVTLQQVRALDDALASVDPHAATALRSRFASEPRLLSALLAPEGRVNNALLRSMSQQALSTPSNVHLTLPAGVPALQASPQYAAAAPPQQ 620
            REARALCLELLLRSKGDEEVMKAFV+RRGL+FIKGWLAEETKSINMMKLLLTVAKVLPVTYSSLMQSDAGKALKALNKHADS IRKQAKAVISHWRTALV DKGEIAKHRKQLDDLHDKLKA+QDAEKKAK E ADAEKRRRDLARAQSRPPNG                                                                                                                AGRGPGGR                       XXXXXXXXXXXX  XXXXXXXXXXILKVTAV T ATAGGQDG  AGG            XXXXXXXXXXXXXXXXXXX     APAAS  AG+GSGPPPIVSLDEMARAESEEKKRLRKAKPAGKKVGWADRAGRTLQVVKEFHSED+ATAVSETPQESDSVVAATMASHHA HRHWAERVKREREMERKFHGK GGRSKGK  HG RA+AGDE XXXXXXXXXXXXXXXXXXXXXXX   KPMVT V WRRPGPYEKGVVHEDVLQLEV+SSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDEVQMYKIPFYMESELEQMQAEA KEQQQQQ PANQPGPVKVTLQQVRALDDALASVDPHAATALRSRFASEPRLLSALLAPEGRVNNALLRSMSQQALSTPSNVHLTLPAGVP LQASP YA   PPQQ
Sbjct:  174 REARALCLELLLRSKGDEEVMKAFVERRGLMFIKGWLAEETKSINMMKLLLTVAKVLPVTYSSLMQSDAGKALKALNKHADSDIRKQAKAVISHWRTALVSDKGEIAKHRKQLDDLHDKLKAKQDAEKKAKAELADAEKRRRDLARAQSRPPNGVGGSPITAPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAKGVSAASKPGRDPPAAAADSSGAPGTGSXXXXXXXXXXXXXXXXXXXXSETGAAAXXXXGGAARYFVGRKLAGRGPGGRVRRPTVAFSGTPAGQGTGKGDRGXXXXXXXXXXXXAGXXXXXXXXXXILKVTAVSTAATAGGQDGTAAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAASAPAASRSAGIGSGPPPIVSLDEMARAESEEKKRLRKAKPAGKKVGWADRAGRTLQVVKEFHSEDAATAVSETPQESDSVVAATMASHHAGHRHWAERVKREREMERKFHGKSGGRSKGKSDHG-RASAGDEEXXXXXXXXXXXXXXXXXXXXXXXKR-KPMVTAVPWRRPGPYEKGVVHEDVLQLEVESSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDEVQMYKIPFYMESELEQMQAEALKEQQQQQAPANQPGPVKVTLQQVRALDDALASVDPHAATALRSRFASEPRLLSALLAPEGRVNNALLRSMSQQALSTPSNVHLTLPAGVPTLQASPSYAPG-PPQQ 908

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BLAST of mRNA_E_fasciculatus_S2_contig6781.14905.1 vs. uniprot
Match: D8LNV8_ECTSI (TFIIS N-terminal domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV8_ECTSI)

HSP 1 Score: 709 bits (1830), Expect = 9.830e-249
Identity = 473/615 (76.91%), Postives = 480/615 (78.05%), Query Frame = 0

Query:    1 REARALCLELLLRSKGDEEVMKAFVDRRGLLFIKGWLAEETKSINMMKLLLTVAKVLPVTYSSLMQSDAGKALKALNKHADSGIRKQAKAVISHWRTALVGDKGEIAKHRKQLDDLHDKLKAEQDAEKKAKTEAADAEKRRRDLARAQSRPPNGFAGRGPGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILKVTAVPTVATAGGQDGATAGGVAAAAVATDGEGXXXXXXXXXXXXXXXXXXXAPAASGVA------GVGSGPPPIVSLDEMARAESEEKKRLRKAKPAGKKVGWADRAGRTLQ---------------------VVKEFHSEDSATAVSETPQESDSVVAATMASHHADHRHWAERVKREREMERKFHGKGGGRSKGKHGSRANAGDEXXXXXXXXXXXXXXXXXXXXXXXXXXXK--PMVTTVAWRRPGPYEKGVVHEDVLQLEVDSSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDEVQMYKIPFYMESELEQMQAEAPKEQQQQQPPANQPGPVKVTLQQVRALDDALASVDPHAATALRSRFASEPRLLSALLAPEGRVNNALLRSMSQ 586
            REARALCLELLLRSKGDEEVMKAFV+RRGL+FIKGWLAEETKSINMMKLLLTVAKVLPVTYSSLMQSDAGKALKALNKHADSGIRKQAKAVISHWRTALV DKGEIAKHRKQLDDLHDKLKA+QDAEKKAK EAADA+KRRRDLAR                                                                   VTAVPT ATAGGQDG   GG AA    TDGE XXXXXXXXXXXXXXXXXXX              G+GSGPPPIVSLDEMARAESEEKKRLRKAKPAGKKVGWADRAGRTLQ                     VVKEFHSED+ATAVSETPQESDSV A TMASHHA HRHWAERVKREREMERKFHGK GGRSK            XXXXXXXXXXXXXXXXXXXXXXXXX  K  PMVTTV WRRPGPYEKGVVHEDVLQLEV+SSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDEVQMYKIPFYMESELEQMQAEAPKEQQQQQPPANQPGPVKVTLQQVRALDDALASVDPHAATALRSRFASEPRLLSALLAPEGRVNNALLRSMSQ
Sbjct:  123 REARALCLELLLRSKGDEEVMKAFVERRGLMFIKGWLAEETKSINMMKLLLTVAKVLPVTYSSLMQSDAGKALKALNKHADSGIRKQAKAVISHWRTALVSDKGEIAKHRKQLDDLHDKLKAKQDAEKKAKAEAADADKRRRDLAR-------------------------------------------------------------------VTAVPTAATAGGQDGTADGGAAA----TDGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGSGPPPIVSLDEMARAESEEKKRLRKAKPAGKKVGWADRAGRTLQESVEGRRLMLMNHPGTRRALQVVKEFHSEDAATAVSETPQESDSVAATTMASHHAGHRHWAERVKREREMERKFHGKSGGRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKRKPMVTTVPWRRPGPYEKGVVHEDVLQLEVESSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDEVQMYKIPFYMESELEQMQAEAPKEQQQQQPPANQPGPVKVTLQQVRALDDALASVDPHAATALRSRFASEPRLLSALLAPEGRVNNALLRSMSQ 666

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig6781.14905.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig6781.14905.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5K714_9PHAE	4.450e-267	74.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNV8_ECTSI	9.830e-249	76.91	TFIIS N-terminal domain-containing protein (Fragme...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 106..147
None	No IPR available	PANTHER	PTHR46557	FAMILY NOT NAMED	coord: 262..569 coord: 11..139
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10		coord: 32..99 e-value: 1.4E-6 score: 30.2
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 20..103
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 56..98 e-value: 9.1E-6 score: 25.6
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 31..102 score: 11.392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig6781	contig	E_fasciculatus_S2_contig6781:1225..8070 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig6781.14905.1	mRNA_E_fasciculatus_S2_contig6781.14905.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig6781 1223..8070 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig6781.14905.1 ID=prot_E_fasciculatus_S2_contig6781.14905.1|Name=mRNA_E_fasciculatus_S2_contig6781.14905.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=620bp
REARALCLELLLRSKGDEEVMKAFVDRRGLLFIKGWLAEETKSINMMKLL
LTVAKVLPVTYSSLMQSDAGKALKALNKHADSGIRKQAKAVISHWRTALV
GDKGEIAKHRKQLDDLHDKLKAEQDAEKKAKTEAADAEKRRRDLARAQSR
PPNGFAGRGPGGRGGRPAAAGKGGKGGATAAAAAAATAGRVGGGGAAAAA
AGRPGGGSGGILKVTAVPTVATAGGQDGATAGGVAAAAVATDGEGASAAA
AVGGESAGAEGSAAAPAASGVAGVGSGPPPIVSLDEMARAESEEKKRLRK
AKPAGKKVGWADRAGRTLQVVKEFHSEDSATAVSETPQESDSVVAATMAS
HHADHRHWAERVKREREMERKFHGKGGGRSKGKHGSRANAGDEEEEEAAV
AGAEAAAAAAAAAAAARKKRKPMVTTVAWRRPGPYEKGVVHEDVLQLEVD
SSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDEVQMYKIPF
YMESELEQMQAEAPKEQQQQQPPANQPGPVKVTLQQVRALDDALASVDPH
AATALRSRFASEPRLLSALLAPEGRVNNALLRSMSQQALSTPSNVHLTLP
AGVPALQASPQYAAAAPPQQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR017923	TFIIS_N
IPR035441	TFIIS/LEDGF_dom_sf