mRNA_E_fasciculatus_S2_contig9905.17899.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: SH3 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH1_ECTSI) HSP 1 Score: 395 bits (1016), Expect = 3.110e-125 Identity = 283/434 (65.21%), Postives = 284/434 (65.44%), Query Frame = 1 Query: 13 MEMLHYSNKVQELKGSQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAHAEQLRQRLLTQDFPLVITAEKNAFDAFAINLNKAAAETSDGEPRPPRMSDAARAPQRVMPPSDFPTSPNTNALAEVSLEDTMSPSGGTAPPTYNSPFPVKVEPPPPAAGEVTPTVVKKRSPTPMSPKDGGAPWSGSNDGGEFGEELKRAHEHQNSKMAAESAAXXXXXXXXXXXXXXXXXXXXXXXAAGVDTPAMTNSSTSGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETTPAESPKPTAAAAAATVDDEAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEQAEELPGVEGGDGAEXXXXXXXXMAELEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTEPW 1314
MEMLHYSNKVQELKGSQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAHAEQLRQRLLTQDFP VITAEKNAFDAFAINLNKAAAETSDGEPRPPRMSDAARAPQR TPMSPKDGGAPWSGSNDGGEFGEELKRAHEHQNSKMAAESA XXXXXXXXXXXXXXXXXXXXXXXA DTPAMTNSSTSGA A T P ESPKP AAAA TVDDEAAV EEQAEE+PG XXXXXXXX LEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTEPW
Sbjct: 162 MEMLHYSNKVQELKGSQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAHAEQLRQRLLTQDFPSVITAEKNAFDAFAINLNKAAAETSDGEPRPPRMSDAARAPQR----------------------------------------------------------------TPMSPKDGGAPWSGSNDGGEFGEELKRAHEHQNSKMAAESAXXXXXXXXXXXXXXXXXXXXXXXXA---DTPAMTNSSTSGADAADDAEKHDPSEAAALAAPAPAGEKDA----TAPTESPKPPAAAA--TVDDEAAVAGSGPKTDSPDDEAEALTAAVPAMATAPEASAPGEEQAEEVPGXXXX--XXXXXXXXXXXXXLEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTEPW 520
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: SH3 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z502_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 8.890e-15 Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1 Query: 1126 ELEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 1308
EL PG +RVRAL+D+EA Q GDL+F GD+IIT+ + DGWV+G C+G TG FP+NYTE
Sbjct: 80 ELPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTE 140
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: SH3 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ66_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.040e-13 Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1 Query: 1129 LEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 1308
L PG +RVRALYD+EA +EGDL+F D+I+TD +S DGWV+GTC+G TG FP+NYTE
Sbjct: 709 LGPGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTE 768
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPH4_HETAK) HSP 1 Score: 70.1 bits (170), Expect = 2.160e-10 Identity = 29/63 (46.03%), Postives = 45/63 (71.43%), Query Frame = 1 Query: 1129 LEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTC-HGNTGIFPANYTEPW 1314
+ PGK+R++A+++Y A Q+GDLSF VGD I + + + W+ G+ G++G+FP NYTEPW
Sbjct: 86 IPPGKIRLKAVFEYVAQQDGDLSFDVGDAIFVEDQVYEENAWIEGSKPDGSSGVFPTNYTEPW 148
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: Endophilin (n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U5Y3_SALR5) HSP 1 Score: 60.5 bits (145), Expect = 5.340e-6 Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1 Query: 1138 GKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 1308
G +R RALYDY+A +EG+L+F GD IITD +GW G C+G G+FPANY E
Sbjct: 271 GGLRARALYDYQADEEGELTFDPGD-IITDIEQID-EGWWQGACNGQFGLFPANYVE 325
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: Cortactin (isoform F n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DF28_THETB) HSP 1 Score: 56.2 bits (134), Expect = 2.670e-5 Identity = 38/87 (43.68%), Postives = 45/87 (51.72%), Query Frame = 1 Query: 1069 GVEGGDG---AEXXXXXXXXMAELEPG----KVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 1308
GVEG D AE A+ PG K A+YDYEAT + +LSF GD+I DGW SG +GN G+FPANY E
Sbjct: 99 GVEGADASTTAEPRTAPAAAPAKAAPGPPATKETCTAVYDYEATDDTELSFNEGDVITVL--EKIDDGWWSGELNGNVGVFPANYVE 183
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: SH3 (domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZDB6_LOTGI) HSP 1 Score: 52.4 bits (124), Expect = 3.140e-5 Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 1 Query: 1156 ALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 1308
ALYDYEAT+E +L+F D IITD +GW G C G G+FPANY E
Sbjct: 6 ALYDYEATEEDELTFDPED-IITDIEMVD-EGWWRGNCRGKNGLFPANYVE 54
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: SH3 (domain-containing protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4UXM7_ENTVE) HSP 1 Score: 56.6 bits (135), Expect = 3.230e-5 Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 1135 PGKVRV-RALYDYEATQEGDLSFGVGDMI-ITDGGAFSGDGWVSGTCHGNTGIFPANYTE 1308
PG+V V RALYDY+A E ++SF GD++ +TDG + D W+S C G TG+ P NY +
Sbjct: 13 PGRVTVYRALYDYKARSEREMSFNEGDLLYVTDGCVY--DDWLSARCGGETGLIPKNYVK 70
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: Growth (factor receptor-bound protein 2 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2G4P6_9TELE) HSP 1 Score: 56.6 bits (135), Expect = 3.370e-5 Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1 Query: 1147 RVRALYDYEATQEGDLSFGVGDMI-ITDGGAFSGDGWVSGTCHGNTGIFPANYTEP 1311
+V+AL+D+ A ++G+LSF GD++ + D SG GW GTC+G TG+FP NY P
Sbjct: 158 QVKALFDFTAKEDGELSFKKGDIVQVLDR---SGAGWWKGTCNGKTGMFPNNYVTP 210
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: SH3 (domain protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9UYV8_TELCI) HSP 1 Score: 53.9 bits (128), Expect = 3.550e-5 Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 Query: 1135 PGKVRV-RALYDYEATQEGDLSFGVGDMI-ITDGGAFSGDGWVSGTCHGNTGIFPANY 1302
PG+VRV RALYDYEA + ++SF GD++ ++D G D W+ C G G+ PANY
Sbjct: 11 PGRVRVYRALYDYEARSDQEMSFAEGDLLYVSDSGP--NDDWLPAACGGKKGLVPANY 66 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9905.17899.1 >prot_E_fasciculatus_S2_contig9905.17899.1 ID=prot_E_fasciculatus_S2_contig9905.17899.1|Name=mRNA_E_fasciculatus_S2_contig9905.17899.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=435bp MEMLHYSNKVQELKGSQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAback to top mRNA from alignment at E_fasciculatus_S2_contig9905:40..3733+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9905.17899.1 ID=mRNA_E_fasciculatus_S2_contig9905.17899.1|Name=mRNA_E_fasciculatus_S2_contig9905.17899.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3694bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9905:40..3733+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9905:40..3733+ >mRNA_E_fasciculatus_S2_contig9905.17899.1 ID=mRNA_E_fasciculatus_S2_contig9905.17899.1|Name=mRNA_E_fasciculatus_S2_contig9905.17899.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1305bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9905:40..3733+ (Ectocarpus fasciculatus EfasUO2)back to top |