mRNA_E_fasciculatus_S2_contig9905.17899.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9905.17899.1
Unique NamemRNA_E_fasciculatus_S2_contig9905.17899.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: SH3 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH1_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 3.110e-125
Identity = 283/434 (65.21%), Postives = 284/434 (65.44%), Query Frame = 1 
Query:   13 MEMLHYSNKVQELKGSQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAHAEQLRQRLLTQDFPLVITAEKNAFDAFAINLNKAAAETSDGEPRPPRMSDAARAPQRVMPPSDFPTSPNTNALAEVSLEDTMSPSGGTAPPTYNSPFPVKVEPPPPAAGEVTPTVVKKRSPTPMSPKDGGAPWSGSNDGGEFGEELKRAHEHQNSKMAAESAAXXXXXXXXXXXXXXXXXXXXXXXAAGVDTPAMTNSSTSGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETTPAESPKPTAAAAAATVDDEAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEQAEELPGVEGGDGAEXXXXXXXXMAELEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTEPW 1314
            MEMLHYSNKVQELKGSQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAHAEQLRQRLLTQDFP VITAEKNAFDAFAINLNKAAAETSDGEPRPPRMSDAARAPQR                                                                TPMSPKDGGAPWSGSNDGGEFGEELKRAHEHQNSKMAAESA XXXXXXXXXXXXXXXXXXXXXXXA   DTPAMTNSSTSGA A                              T P ESPKP AAAA  TVDDEAAV                                  EEQAEE+PG        XXXXXXXX   LEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTEPW
Sbjct:  162 MEMLHYSNKVQELKGSQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAHAEQLRQRLLTQDFPSVITAEKNAFDAFAINLNKAAAETSDGEPRPPRMSDAARAPQR----------------------------------------------------------------TPMSPKDGGAPWSGSNDGGEFGEELKRAHEHQNSKMAAESAXXXXXXXXXXXXXXXXXXXXXXXXA---DTPAMTNSSTSGADAADDAEKHDPSEAAALAAPAPAGEKDA----TAPTESPKPPAAAA--TVDDEAAVAGSGPKTDSPDDEAEALTAAVPAMATAPEASAPGEEQAEEVPGXXXX--XXXXXXXXXXXXXLEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTEPW 520
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: SH3 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z502_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.890e-15
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1 
Query: 1126 ELEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 1308
            EL PG +RVRAL+D+EA Q GDL+F  GD+IIT+   +  DGWV+G C+G TG FP+NYTE
Sbjct:   80 ELPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTE 140
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: SH3 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ66_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.040e-13
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query: 1129 LEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 1308
            L PG +RVRALYD+EA +EGDL+F   D+I+TD   +S DGWV+GTC+G TG FP+NYTE
Sbjct:  709 LGPGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTE 768
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPH4_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 2.160e-10
Identity = 29/63 (46.03%), Postives = 45/63 (71.43%), Query Frame = 1 
Query: 1129 LEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTC-HGNTGIFPANYTEPW 1314
            + PGK+R++A+++Y A Q+GDLSF VGD I  +   +  + W+ G+   G++G+FP NYTEPW
Sbjct:   86 IPPGKIRLKAVFEYVAQQDGDLSFDVGDAIFVEDQVYEENAWIEGSKPDGSSGVFPTNYTEPW 148
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: Endophilin (n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U5Y3_SALR5)

HSP 1 Score: 60.5 bits (145), Expect = 5.340e-6
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1 
Query: 1138 GKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 1308
            G +R RALYDY+A +EG+L+F  GD IITD      +GW  G C+G  G+FPANY E
Sbjct:  271 GGLRARALYDYQADEEGELTFDPGD-IITDIEQID-EGWWQGACNGQFGLFPANYVE 325
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: Cortactin (isoform F n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DF28_THETB)

HSP 1 Score: 56.2 bits (134), Expect = 2.670e-5
Identity = 38/87 (43.68%), Postives = 45/87 (51.72%), Query Frame = 1 
Query: 1069 GVEGGDG---AEXXXXXXXXMAELEPG----KVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 1308
            GVEG D    AE         A+  PG    K    A+YDYEAT + +LSF  GD+I         DGW SG  +GN G+FPANY E
Sbjct:   99 GVEGADASTTAEPRTAPAAAPAKAAPGPPATKETCTAVYDYEATDDTELSFNEGDVITVL--EKIDDGWWSGELNGNVGVFPANYVE 183
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: SH3 (domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZDB6_LOTGI)

HSP 1 Score: 52.4 bits (124), Expect = 3.140e-5
Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 1 
Query: 1156 ALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 1308
            ALYDYEAT+E +L+F   D IITD      +GW  G C G  G+FPANY E
Sbjct:    6 ALYDYEATEEDELTFDPED-IITDIEMVD-EGWWRGNCRGKNGLFPANYVE 54
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: SH3 (domain-containing protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4UXM7_ENTVE)

HSP 1 Score: 56.6 bits (135), Expect = 3.230e-5
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query: 1135 PGKVRV-RALYDYEATQEGDLSFGVGDMI-ITDGGAFSGDGWVSGTCHGNTGIFPANYTE 1308
            PG+V V RALYDY+A  E ++SF  GD++ +TDG  +  D W+S  C G TG+ P NY +
Sbjct:   13 PGRVTVYRALYDYKARSEREMSFNEGDLLYVTDGCVY--DDWLSARCGGETGLIPKNYVK 70
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: Growth (factor receptor-bound protein 2 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2G4P6_9TELE)

HSP 1 Score: 56.6 bits (135), Expect = 3.370e-5
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1 
Query: 1147 RVRALYDYEATQEGDLSFGVGDMI-ITDGGAFSGDGWVSGTCHGNTGIFPANYTEP 1311
            +V+AL+D+ A ++G+LSF  GD++ + D    SG GW  GTC+G TG+FP NY  P
Sbjct:  158 QVKALFDFTAKEDGELSFKKGDIVQVLDR---SGAGWWKGTCNGKTGMFPNNYVTP 210
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Match: SH3 (domain protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9UYV8_TELCI)

HSP 1 Score: 53.9 bits (128), Expect = 3.550e-5
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query: 1135 PGKVRV-RALYDYEATQEGDLSFGVGDMI-ITDGGAFSGDGWVSGTCHGNTGIFPANY 1302
            PG+VRV RALYDYEA  + ++SF  GD++ ++D G    D W+   C G  G+ PANY
Sbjct:   11 PGRVRVYRALYDYEARSDQEMSFAEGDLLYVSDSGP--NDDWLPAACGGKKGLVPANY 66
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9905.17899.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
SH33.110e-12565.21domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
SH38.890e-1560.66domain-containing protein n=1 Tax=Tribonema minus ... [more]
SH31.040e-1363.33domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical2.160e-1046.03protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Endophilin5.340e-654.39n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / B... [more]
Cortactin2.670e-543.68isoform F n=1 Tax=Thecamonas trahens ATCC 50062 Ta... [more]
SH33.140e-554.90domain-containing protein (Fragment) n=1 Tax=Lotti... [more]
SH33.230e-548.33domain-containing protein n=1 Tax=Enterobius vermi... [more]
Growth3.370e-548.21factor receptor-bound protein 2 n=1 Tax=Liparis ta... [more]
SH33.550e-548.28domain protein n=1 Tax=Teladorsagia circumcincta T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9905contigE_fasciculatus_S2_contig9905:40..3733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score400.6
Seed ortholog evalue9.4e-109
Seed eggNOG ortholog2880.D8LEH1
Model size2527
KEGG koko:K11247,ko:K11650,ko:K20047
KEGG Pathwayko04144,ko04714,ko05225,map04144,map04714,map05225
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG2199@1,KOG2199@2759
Ec32 ortholog descriptionSH3 domain
Ec32 orthologEc-21_004710.1
Cds size1305
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842633.2347326-UTR-E_fasciculatus_S2_contig9905:39..511696842633.2347326-UTR-E_fasciculatus_S2_contig9905:39..51Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9905 40..51 +
1696842633.2831933-UTR-E_fasciculatus_S2_contig9905:2523..37331696842633.2831933-UTR-E_fasciculatus_S2_contig9905:2523..3733Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9905 2524..3733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842633.2500827-CDS-E_fasciculatus_S2_contig9905:51..3741696842633.2500827-CDS-E_fasciculatus_S2_contig9905:51..374Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9905 52..374 +
1696842633.262017-CDS-E_fasciculatus_S2_contig9905:1000..11921696842633.262017-CDS-E_fasciculatus_S2_contig9905:1000..1192Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9905 1001..1192 +
1696842633.2722764-CDS-E_fasciculatus_S2_contig9905:1733..25231696842633.2722764-CDS-E_fasciculatus_S2_contig9905:1733..2523Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9905 1734..2523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9905.17899.1prot_E_fasciculatus_S2_contig9905.17899.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9905 52..2523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9905.17899.1

>prot_E_fasciculatus_S2_contig9905.17899.1 ID=prot_E_fasciculatus_S2_contig9905.17899.1|Name=mRNA_E_fasciculatus_S2_contig9905.17899.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=435bp
MEMLHYSNKVQELKGSQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFA
HAEQLRQRLLTQDFPLVITAEKNAFDAFAINLNKAAAETSDGEPRPPRMS
DAARAPQRVMPPSDFPTSPNTNALAEVSLEDTMSPSGGTAPPTYNSPFPV
KVEPPPPAAGEVTPTVVKKRSPTPMSPKDGGAPWSGSNDGGEFGEELKRA
HEHQNSKMAAESAAAAGAAAAAAAAAAAAGEALAGTGAAGVDTPAMTNSS
TSGAGAGGADAADDAENHDPSEAAAAAAAAAGEKGETTPAESPKPTAAAA
AATVDDEAAVAGSGPKVESPDEEAKVLTAAVPATATAPEASTPGEEQAEE
LPGVEGGDGAEAEAEAEAEMAELEPGKVRVRALYDYEATQEGDLSFGVGD
MIITDGGAFSGDGWVSGTCHGNTGIFPANYTEPW*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9905:40..3733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9905.17899.1 ID=mRNA_E_fasciculatus_S2_contig9905.17899.1|Name=mRNA_E_fasciculatus_S2_contig9905.17899.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3694bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9905:40..3733+ (Ectocarpus fasciculatus EfasUO2)
ACCCACACCCAGATGGAGATGCTCCACTACTCCAACAAGGTGCAGGAGCT
GAAGGGCAGCCAGAAGGCCACCGACGAGAAGAAGGACCGCAACAAGGAGA
AGTACGCGCAGGCGTCGCAGGCCCTGAGGGACCAGACGAACCAGCTCATG
TCCATCTTCGCCCACGCCGAGCAGCTGCGGCAGCGGCTCCTGACCCAGGA
TTTCCCGTTGGTGATCACGGCGGAGAAGAACGCCTTCGACGCCTTCGCGA
TCAACCTGAACAAGGCGGCAGCGGAGACGTCGGACGGGGAGCCGCGACCC
CCACGGATGTCGGACGCGGCCCGGGCTCCCCAAAGGTAATCGTTGTCATC
TCCATCGCCGTTTTTGTGTATTTTGTCGTCGTTGTTGTTGTCATTATTTT
TGTATTTTTGTGTGTGTTGTCGTCGTCGTCGTTCTCATGTCGAGGTCGAT
TTTTTGTTTTTTTTTGTCGTCGTTTTGTTATTTTTTGTTTTTCGTCGTCG
TTGTCATCGCCCCCGGGTTTGTGTATATATTTGGTTGCTGTGATCGTCTT
CGCCGTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTTCTCACAGA
AACAAACCAGATTAACCTCTCTCTATGCATACATATATGCAGATGAGAAG
AGTCCAGGGAACATTGGCGATGGACTCGTCATGTTCGTCTGACCTACCGA
CCTGTGTTTCTACTCAATTGTCTCCGAGCGCTGTTGTCAGTTGTCCGGAC
ACGCTGAATTGCTACGGTTTCTTGCAACCTCTCGATTCCCCAATTCTCGT
CGTTGCACTCCCTGGTATCCCGCACTCTTCCATGTGGGGGTTATCTGCCT
CCTTCTTCCCCCCCCCCCTGGCTCCACGTATCATGGCCTCTCAAGCGCAG
AATGCCCCCCTCCCCCTTCCCCCGCCGTACGACGCGTTTTTTCTCTCGAT
GTGTTGGTCAGGGTGATGCCGCCGAGCGACTTCCCCACGTCGCCGAACAC
CAACGCATTGGCGGAGGTTTCTCTGGAAGACACCATGTCGCCGAGTGGGG
GCACGGCGCCTCCGACCTACAACTCGCCGTTCCCGGTTAAGGTCGAGCCT
CCTCCGCCGGCGGCGGGGGAGGTTACCCCGACGGTGGTCAAGAAGCGGAG
TCCGTGAGTACCCTGCCGTTGTGTATTTTGTGGAAGTAGGGGGGGGGGGG
GGCATCTTCTGTTTGCATGCCTTCACGGTTTGACCATTGACCATGCGTAC
TCGAGAGGACGGAGCATTGAGCATTGTCCCCACAGGACTGATGGCCCATC
GGGGGGTGCTGGATGTTTTAGATGCCTTAGCTGCGAGACCATTGACCACG
AGTTGCGGGGGGAGCGTCAAAGATCTTGGCGAGCGTGCAGAGGCGTCTCG
GGGTTTTCGCGATATTTCTTCAGATTTTTCTGGGTGTATTGGTACACATG
CATACCTGGGACGAGTTTTGCCTCGGAAGGGTACGTGCTCTTGCTATTGC
TATTGGCGAGCCCCCTCCCGCTCCCGCCCTGAATAAACAACGGCCGGTGC
TTTACGCGCGAGATGGATGTAGGGGCGACAACGACGAGCACGCTTGCATC
TGCAGCGTTTCGAACCCGTGTGTTAAGAGAGAGGACACGCGCTAACCCTG
ACCCACGGACGCGTACTTCCCTTTTGTATATCTCGCCAACCTAGAACGCC
CATGAGCCCGAAGGACGGCGGAGCCCCCTGGTCGGGCAGCAACGACGGGG
GCGAGTTCGGCGAGGAGCTCAAGCGCGCGCACGAGCACCAGAACAGCAAG
ATGGCGGCGGAGTCGGCGGCGGCCGCGGGAGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCAGCGGGGGAGGCGTTGGCGGGGACGGGGGCAGCGGGGG
TGGACACCCCGGCGATGACGAACTCGTCCACCTCGGGCGCCGGCGCCGGC
GGCGCCGATGCCGCCGACGATGCCGAGAACCACGACCCGTCAGAGGCGGC
GGCGGCCGCGGCGGCGGCAGCGGGGGAGAAGGGCGAGACCACGCCGGCAG
AATCTCCGAAGCCTACCGCCGCCGCCGCCGCCGCAACCGTTGACGACGAG
GCGGCGGTGGCGGGTTCGGGGCCAAAAGTGGAGAGCCCTGACGAGGAGGC
GAAGGTCTTGACGGCGGCGGTGCCGGCGACGGCGACGGCGCCGGAGGCGT
CGACACCGGGGGAGGAGCAAGCGGAGGAGTTACCGGGGGTAGAGGGTGGG
GACGGGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGATGGCGGAGCTTGA
GCCTGGGAAGGTGCGGGTGCGCGCTCTGTACGACTACGAGGCCACGCAGG
AAGGAGACCTGAGCTTCGGGGTGGGGGACATGATCATCACAGACGGGGGA
GCGTTTTCGGGAGACGGGTGGGTGTCGGGGACGTGCCACGGGAATACCGG
GATATTCCCGGCGAACTACACGGAACCGTGGTAACTTAACGGGCGGTGTC
GGTGGTGGTGGTGGTGGTGGTGGTGGTGACGGGCCTGAGGGACGCGCGGG
GTTGGCGTGACGATTTGAAGGAGGCATCGGTTGCTTGTGGTGTTGCCTTC
GATACACCTAGTTTTTTTAACTGTTTTTTCTTTTTTTATTGTGGTTTTTG
CAAGCGAGGGAGTGTTGATCTCCTTTTTTCGAGGGTCCGGAGAACCGGAA
AGGCCCCTGTTGTATTGGTGCATCCTGCACGTAGAATCAATCACGTCCTT
TGGGTCCGAAGACACCGTTGCTTATTCTAACAGAGATGATGGCTTGCGCC
CCATACCTACAGCATGACCGTCTCGTCGCTGTGTGCCTGGGCTGTCTCCC
CACCCCCAGCCCGACTACCGATGCACGTACATGTGGAGCACGCGCCAGTA
TGGTAAGGAGTAGGTTAAAGTCAATTCTTTGTTGTAAACGTACGAACGAC
ACCAAGGGGGTGTTTCGATGTATTCTTGTTGTTTCTTGTGTGAAATTGCA
TTGCTTGCCGCCGCGCTCCTATTTTCGTGTAATTACCATGCCGCTGGCTT
GGGTGGCAAGCAGGCAGAGATGCAGAGAGGCAGGCAGGCAGGCAAGGGTG
TCGCAGCTTCTTTTTTCTTTTTTCTTGGCGTTCCTGTTTGTCGGACGGTC
TGATGGTCACGGTTTGGCTTCGCTTTTTGATAAACGGAACGGCGGCGGAG
ATGATGAGGAATTCACCCATTCGTCCTTCACTGCTGTTTGGCAGCTTAAA
AGTAACCACAAGCATCCGTGGCGACCTTTGAGGTCGGCGGACGCTTCGTT
AACACGCTCGCGATAAAGAATGTCTCGCACCGCGCTCGCTCCTGCTTCCT
TTCTGCTGAACGCAGTTCTTTGGACGGTTTGTGGGTGGGCCCTTTTGGCC
GTGCCGCGTTGTGGCCACCACCTCGTTACCCACACTGCTGCAGCAGCCAG
AGAGATATATATGTAGACGCAGCTAGCTGTTGGCATGTTCATGCCGCCCA
GAAAGAGACAGACGGTGCTAATAGGACACAACAGTATGTGGGGTGGGCCC
GATGTTTTTGAAGGACAACTCAAACAGACAAGTAGGTGCGTCGGGCGCTT
GGTGTGCACCTTAACGTCATTTGGCCAGGACGATAGACAGACCTCTGCCG
AGGCAAAGAAAAGAAACGGAATTCCCAGCAAACATACAGCTGTT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9905:40..3733+

>mRNA_E_fasciculatus_S2_contig9905.17899.1 ID=mRNA_E_fasciculatus_S2_contig9905.17899.1|Name=mRNA_E_fasciculatus_S2_contig9905.17899.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1305bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9905:40..3733+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGATGCTCCACTACTCCAACAAGGTGCAGGAGCTGAAGGGCAGCCA
GAAGGCCACCGACGAGAAGAAGGACCGCAACAAGGAGAAGTACGCGCAGG
CGTCGCAGGCCCTGAGGGACCAGACGAACCAGCTCATGTCCATCTTCGCC
CACGCCGAGCAGCTGCGGCAGCGGCTCCTGACCCAGGATTTCCCGTTGGT
GATCACGGCGGAGAAGAACGCCTTCGACGCCTTCGCGATCAACCTGAACA
AGGCGGCAGCGGAGACGTCGGACGGGGAGCCGCGACCCCCACGGATGTCG
GACGCGGCCCGGGCTCCCCAAAGGGTGATGCCGCCGAGCGACTTCCCCAC
GTCGCCGAACACCAACGCATTGGCGGAGGTTTCTCTGGAAGACACCATGT
CGCCGAGTGGGGGCACGGCGCCTCCGACCTACAACTCGCCGTTCCCGGTT
AAGGTCGAGCCTCCTCCGCCGGCGGCGGGGGAGGTTACCCCGACGGTGGT
CAAGAAGCGGAGTCCAACGCCCATGAGCCCGAAGGACGGCGGAGCCCCCT
GGTCGGGCAGCAACGACGGGGGCGAGTTCGGCGAGGAGCTCAAGCGCGCG
CACGAGCACCAGAACAGCAAGATGGCGGCGGAGTCGGCGGCGGCCGCGGG
AGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGGGGAGGCGTTGG
CGGGGACGGGGGCAGCGGGGGTGGACACCCCGGCGATGACGAACTCGTCC
ACCTCGGGCGCCGGCGCCGGCGGCGCCGATGCCGCCGACGATGCCGAGAA
CCACGACCCGTCAGAGGCGGCGGCGGCCGCGGCGGCGGCAGCGGGGGAGA
AGGGCGAGACCACGCCGGCAGAATCTCCGAAGCCTACCGCCGCCGCCGCC
GCCGCAACCGTTGACGACGAGGCGGCGGTGGCGGGTTCGGGGCCAAAAGT
GGAGAGCCCTGACGAGGAGGCGAAGGTCTTGACGGCGGCGGTGCCGGCGA
CGGCGACGGCGCCGGAGGCGTCGACACCGGGGGAGGAGCAAGCGGAGGAG
TTACCGGGGGTAGAGGGTGGGGACGGGGCGGAGGCGGAGGCGGAGGCGGA
GGCGGAGATGGCGGAGCTTGAGCCTGGGAAGGTGCGGGTGCGCGCTCTGT
ACGACTACGAGGCCACGCAGGAAGGAGACCTGAGCTTCGGGGTGGGGGAC
ATGATCATCACAGACGGGGGAGCGTTTTCGGGAGACGGGTGGGTGTCGGG
GACGTGCCACGGGAATACCGGGATATTCCCGGCGAACTACACGGAACCGT
GGTAA
back to top