mRNA_E_fasciculatus_S2_contig9875.17875.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Match: DDE_Tnp_1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE) HSP 1 Score: 302 bits (773), Expect = 6.850e-94 Identity = 167/248 (67.34%), Postives = 191/248 (77.02%), Query Frame = 2 Query: 98 GEKASICAPPKDTAPVPICSSGSVFIHIDMKTLKHWGFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLSSLLESGPTRCSV---KAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSKVPRADIPLSGLLKRV-GAYTIF*ASQPSSSHVPVDVVVMSADPGQAKVITVSSAKAGVWAKKDPDVILKTLTCVLGDDYYRRDTRASRSDEYETSRRTDRPYGRAIDRLRNEKIRT 829
GEK + APPKDTA +PICS+G+VFIHIDMKTLK WG SNDAWW+ +VL+PFSKE N KCL ++E+ +YAS+E GYLSSLL SGP +C ++FLTDGVQIKLL TLD+ RKAFSGSS LNEA Y+K+PRA+ L LLK G Y I +S S+ + DVVVMSADPGQAKVI VSSA A WAK+DP VILKT TCV GDDY RRDT ASRSDEYET RR D+PYG AIDRL NEK RT
Sbjct: 447 GEKFTY-APPKDTAVLPICSTGAVFIHIDMKTLKSWGLLHSNDAWWYKDVLRPFSKEANIKCLVNKENARYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLDHGRKAFSGSSELNEAGYNKLPRANAQLESLLKEGRGVYNI--SSLLESTSIREDVVVMSADPGQAKVINVSSATASTWAKQDPGVILKTSTCVFGDDY-RRDTLASRSDEYETFRRKDQPYGVAIDRLSNEKKRT 690
BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Match: EsV-1-178/222 (paralog 1 n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E53) HSP 1 Score: 293 bits (749), Expect = 3.680e-92 Identity = 160/241 (66.39%), Postives = 186/241 (77.18%), Query Frame = 2 Query: 119 APPKDTAPVPICSSGSVFIHIDMKTLKHWGFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLSSLLESGPTRCSV---KAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSKVPRADIPLSGLL-KRVGAYTIF*ASQPSSSHVPVDVVVMSADPGQAKVITVSSAKAGVWAKKDPDVILKTLTCVLGDDYYRRDTRASRSDEYETSRRTDRPYGRAIDRLRNEKIRT 829
APPKDTA +PICS+G+VFI+IDMKTL WG SNDAWW+ +VL+PFSKE N KCL ++E+ +YAS+E GYLSSLLESGP +C ++FLTDGVQIKLL TL++ RKAFSGSS LNE Y+K+PRAD+ L LL + G Y I +S S+ + DVVVMSADPGQAKVI VSSA A WAK+DP VILKT TCV GDDY RRDT ASRSDEYET RR +PYG AIDRL NEK RT
Sbjct: 227 APPKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANVKCLVNKENARYASSEHGYLSSLLESGPDKCPWMIGESFLTDGVQIKLLLKTLEHGRKAFSGSSELNEEGYNKLPRADVQLESLLGEGRGVYNI--SSLLKSTSIREDVVVMSADPGQAKVINVSSAMARTWAKQDPGVILKTSTCVFGDDY-RRDTLASRSDEYETFRRKGQPYGVAIDRLGNEKKRT 464
BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Match: EsV-1-178/222 (paralog 2 n=2 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E54) HSP 1 Score: 293 bits (749), Expect = 2.780e-90 Identity = 160/241 (66.39%), Postives = 186/241 (77.18%), Query Frame = 2 Query: 119 APPKDTAPVPICSSGSVFIHIDMKTLKHWGFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLSSLLESGPTRCSV---KAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSKVPRADIPLSGLL-KRVGAYTIF*ASQPSSSHVPVDVVVMSADPGQAKVITVSSAKAGVWAKKDPDVILKTLTCVLGDDYYRRDTRASRSDEYETSRRTDRPYGRAIDRLRNEKIRT 829
APPKDTA +PICS+G+VFI+IDMKTL WG SNDAWW+ +VL+PFSKE N KCL ++E+ +YAS+E GYLSSLLESGP +C ++FLTDGVQIKLL TL++ RKAFSGSS LNE Y+K+PRAD+ L LL + G Y I +S S+ + DVVVMSADPGQAKVI VSSA A WAK+DP VILKT TCV GDDY RRDT ASRSDEYET RR +PYG AIDRL NEK RT
Sbjct: 350 APPKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANVKCLVNKENARYASSEHGYLSSLLESGPDKCPWMIGESFLTDGVQIKLLLKTLEHGRKAFSGSSELNEKGYNKLPRADVQLESLLGEGRGVYNI--SSLLKSTSIREDVVVMSADPGQAKVINVSSATARTWAKQDPGVILKTSTCVFGDDY-RRDTLASRSDEYETFRRKGQPYGVAIDRLGNEKKRT 587
BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Match: DDE_Tnp_1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE) HSP 1 Score: 293 bits (749), Expect = 6.110e-90 Identity = 158/241 (65.56%), Postives = 186/241 (77.18%), Query Frame = 2 Query: 119 APPKDTAPVPICSSGSVFIHIDMKTLKHWGFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLSSLLESGPTRCSV---KAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSKVPRADIPLSGLLKRV-GAYTIF*ASQPSSSHVPVDVVVMSADPGQAKVITVSSAKAGVWAKKDPDVILKTLTCVLGDDYYRRDTRASRSDEYETSRRTDRPYGRAIDRLRNEKIRT 829
APPKDTA +PICS+GSVFI+IDMKTLK WG SNDAWW+ +VL+PFSKE N KCL ++E+ +YAS+E GYLSSLL SGP +C ++FLTDGVQIKLL TL++ RKAF GS+ LNEA Y+K+PRAD+ L LL+ G Y I +S S + DVVVMSADPGQAKVI VSSA A WA++DP VIL + TCV GDDY RRDT ASRSD+YET RR D+PYG AIDRLRNEK RT
Sbjct: 389 APPKDTAVLPICSTGSVFIYIDMKTLKSWGLLHSNDAWWYKDVLRPFSKEANIKCLANKENSRYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFPGSTQLNEAGYNKLPRADVQLESLLREGRGVYNI--SSLLDSPSIREDVVVMSADPGQAKVINVSSATARTWARQDPGVILNSSTCVFGDDY-RRDTLASRSDKYETFRRKDQPYGVAIDRLRNEKKRT 626
BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Match: FirrV-1-M1 (n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT6_9PHYC) HSP 1 Score: 291 bits (745), Expect = 1.300e-89 Identity = 155/246 (63.01%), Postives = 187/246 (76.02%), Query Frame = 2 Query: 104 KASICAPPKDTAPVPICSSGSVFIHIDMKTLKHWGFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLSSLLESGPTRCSV---KAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSKVPRADIPLSGLLKRV-GAYTIF*ASQPSSSHVPVDVVVMSADPGQAKVITVSSAKAGVWAKKDPDVILKTLTCVLGDDYYRRDTRASRSDEYETSRRTDRPYGRAIDRLRNEKIRT 829
+ I APP+DT+ +PICS+GSVFIH+DMKTLK WG + SNDAWW+ NVL+PFS+E N KCL S+E+ +YAS+EQGYLSSLL++GP +C ++FLTDGVQIKLL TL++TR++FSGSS LNE YSK+PRAD PL LL++ G Y I +S S + D+VVMSADPGQAKVI V SA + W KKDP ILKT TCV GDDY RR+T AS SDEYET RR YG AIDRLR+EK RT
Sbjct: 354 RGDIIAPPRDTSVLPICSTGSVFIHVDMKTLKSWGLFHSNDAWWYKNVLRPFSREANIKCLRSRENTRYASSEQGYLSSLLDNGPAKCPWFVGESFLTDGVQIKLLLVTLEHTRESFSGSSQLNEEGYSKLPRADAPLETLLEKGRGVYNI--SSLVESESIRGDLVVMSADPGQAKVINVCSATSETWEKKDPVAILKTSTCVFGDDY-RRETLASHSDEYETLRRRGTSYGIAIDRLRDEKKRT 596
BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI) HSP 1 Score: 155 bits (393), Expect = 2.490e-39 Identity = 86/144 (59.72%), Postives = 105/144 (72.92%), Query Frame = 2 Query: 206 GFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLSSLLESGPTRCSV---KAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSKVPRADIPLSGLLKRV-GAYTIF*ASQPSSSHVPVDVVVMSADPGQAKV 625
G SNDAWW+ +VL+PFSKE N KCL ++E+ +YAS+E GYLSSL SGP +C ++FLTDGVQIKLL TL++ RKAFSGSS LNEA Y+K+PRAD L LLK G Y I +S S+ + DV+VMSADPGQAKV
Sbjct: 579 GLLHSNDAWWYKDVLRPFSKEANIKCLVNKENARYASSEHGYLSSLQGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFSGSSELNEAGYNKLPRADAQLESLLKEGRGVYNI--SSLLESTSIREDVIVMSADPGQAKV 720 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9875.17875.1 >prot_E_fasciculatus_S2_contig9875.17875.1 ID=prot_E_fasciculatus_S2_contig9875.17875.1|Name=mRNA_E_fasciculatus_S2_contig9875.17875.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=122bp MKTLKHWGFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLback to top mRNA from alignment at E_fasciculatus_S2_contig9875:2128..2993- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9875.17875.1 ID=mRNA_E_fasciculatus_S2_contig9875.17875.1|Name=mRNA_E_fasciculatus_S2_contig9875.17875.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=866bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9875:2128..2993- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9875:2128..2993- >mRNA_E_fasciculatus_S2_contig9875.17875.1 ID=mRNA_E_fasciculatus_S2_contig9875.17875.1|Name=mRNA_E_fasciculatus_S2_contig9875.17875.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=366bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9875:2128..2993- (Ectocarpus fasciculatus EfasUO2)back to top |