mRNA_E_fasciculatus_S2_contig9875.17875.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9875.17875.1
Unique NamemRNA_E_fasciculatus_S2_contig9875.17875.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Match: DDE_Tnp_1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 6.850e-94
Identity = 167/248 (67.34%), Postives = 191/248 (77.02%), Query Frame = 2 
Query:   98 GEKASICAPPKDTAPVPICSSGSVFIHIDMKTLKHWGFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLSSLLESGPTRCSV---KAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSKVPRADIPLSGLLKRV-GAYTIF*ASQPSSSHVPVDVVVMSADPGQAKVITVSSAKAGVWAKKDPDVILKTLTCVLGDDYYRRDTRASRSDEYETSRRTDRPYGRAIDRLRNEKIRT 829
            GEK +  APPKDTA +PICS+G+VFIHIDMKTLK WG   SNDAWW+ +VL+PFSKE N KCL ++E+ +YAS+E GYLSSLL SGP +C     ++FLTDGVQIKLL  TLD+ RKAFSGSS LNEA Y+K+PRA+  L  LLK   G Y I  +S   S+ +  DVVVMSADPGQAKVI VSSA A  WAK+DP VILKT TCV GDDY RRDT ASRSDEYET RR D+PYG AIDRL NEK RT
Sbjct:  447 GEKFTY-APPKDTAVLPICSTGAVFIHIDMKTLKSWGLLHSNDAWWYKDVLRPFSKEANIKCLVNKENARYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLDHGRKAFSGSSELNEAGYNKLPRANAQLESLLKEGRGVYNI--SSLLESTSIREDVVVMSADPGQAKVINVSSATASTWAKQDPGVILKTSTCVFGDDY-RRDTLASRSDEYETFRRKDQPYGVAIDRLSNEKKRT 690
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BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Match: EsV-1-178/222 (paralog 1 n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E53)

HSP 1 Score: 293 bits (749), Expect = 3.680e-92
Identity = 160/241 (66.39%), Postives = 186/241 (77.18%), Query Frame = 2 
Query:  119 APPKDTAPVPICSSGSVFIHIDMKTLKHWGFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLSSLLESGPTRCSV---KAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSKVPRADIPLSGLL-KRVGAYTIF*ASQPSSSHVPVDVVVMSADPGQAKVITVSSAKAGVWAKKDPDVILKTLTCVLGDDYYRRDTRASRSDEYETSRRTDRPYGRAIDRLRNEKIRT 829
            APPKDTA +PICS+G+VFI+IDMKTL  WG   SNDAWW+ +VL+PFSKE N KCL ++E+ +YAS+E GYLSSLLESGP +C     ++FLTDGVQIKLL  TL++ RKAFSGSS LNE  Y+K+PRAD+ L  LL +  G Y I  +S   S+ +  DVVVMSADPGQAKVI VSSA A  WAK+DP VILKT TCV GDDY RRDT ASRSDEYET RR  +PYG AIDRL NEK RT
Sbjct:  227 APPKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANVKCLVNKENARYASSEHGYLSSLLESGPDKCPWMIGESFLTDGVQIKLLLKTLEHGRKAFSGSSELNEEGYNKLPRADVQLESLLGEGRGVYNI--SSLLKSTSIREDVVVMSADPGQAKVINVSSAMARTWAKQDPGVILKTSTCVFGDDY-RRDTLASRSDEYETFRRKGQPYGVAIDRLGNEKKRT 464
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BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Match: EsV-1-178/222 (paralog 2 n=2 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E54)

HSP 1 Score: 293 bits (749), Expect = 2.780e-90
Identity = 160/241 (66.39%), Postives = 186/241 (77.18%), Query Frame = 2 
Query:  119 APPKDTAPVPICSSGSVFIHIDMKTLKHWGFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLSSLLESGPTRCSV---KAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSKVPRADIPLSGLL-KRVGAYTIF*ASQPSSSHVPVDVVVMSADPGQAKVITVSSAKAGVWAKKDPDVILKTLTCVLGDDYYRRDTRASRSDEYETSRRTDRPYGRAIDRLRNEKIRT 829
            APPKDTA +PICS+G+VFI+IDMKTL  WG   SNDAWW+ +VL+PFSKE N KCL ++E+ +YAS+E GYLSSLLESGP +C     ++FLTDGVQIKLL  TL++ RKAFSGSS LNE  Y+K+PRAD+ L  LL +  G Y I  +S   S+ +  DVVVMSADPGQAKVI VSSA A  WAK+DP VILKT TCV GDDY RRDT ASRSDEYET RR  +PYG AIDRL NEK RT
Sbjct:  350 APPKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANVKCLVNKENARYASSEHGYLSSLLESGPDKCPWMIGESFLTDGVQIKLLLKTLEHGRKAFSGSSELNEKGYNKLPRADVQLESLLGEGRGVYNI--SSLLKSTSIREDVVVMSADPGQAKVINVSSATARTWAKQDPGVILKTSTCVFGDDY-RRDTLASRSDEYETFRRKGQPYGVAIDRLGNEKKRT 587
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BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Match: DDE_Tnp_1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 6.110e-90
Identity = 158/241 (65.56%), Postives = 186/241 (77.18%), Query Frame = 2 
Query:  119 APPKDTAPVPICSSGSVFIHIDMKTLKHWGFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLSSLLESGPTRCSV---KAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSKVPRADIPLSGLLKRV-GAYTIF*ASQPSSSHVPVDVVVMSADPGQAKVITVSSAKAGVWAKKDPDVILKTLTCVLGDDYYRRDTRASRSDEYETSRRTDRPYGRAIDRLRNEKIRT 829
            APPKDTA +PICS+GSVFI+IDMKTLK WG   SNDAWW+ +VL+PFSKE N KCL ++E+ +YAS+E GYLSSLL SGP +C     ++FLTDGVQIKLL  TL++ RKAF GS+ LNEA Y+K+PRAD+ L  LL+   G Y I  +S   S  +  DVVVMSADPGQAKVI VSSA A  WA++DP VIL + TCV GDDY RRDT ASRSD+YET RR D+PYG AIDRLRNEK RT
Sbjct:  389 APPKDTAVLPICSTGSVFIYIDMKTLKSWGLLHSNDAWWYKDVLRPFSKEANIKCLANKENSRYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFPGSTQLNEAGYNKLPRADVQLESLLREGRGVYNI--SSLLDSPSIREDVVVMSADPGQAKVINVSSATARTWARQDPGVILNSSTCVFGDDY-RRDTLASRSDKYETFRRKDQPYGVAIDRLRNEKKRT 626
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BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Match: FirrV-1-M1 (n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT6_9PHYC)

HSP 1 Score: 291 bits (745), Expect = 1.300e-89
Identity = 155/246 (63.01%), Postives = 187/246 (76.02%), Query Frame = 2 
Query:  104 KASICAPPKDTAPVPICSSGSVFIHIDMKTLKHWGFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLSSLLESGPTRCSV---KAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSKVPRADIPLSGLLKRV-GAYTIF*ASQPSSSHVPVDVVVMSADPGQAKVITVSSAKAGVWAKKDPDVILKTLTCVLGDDYYRRDTRASRSDEYETSRRTDRPYGRAIDRLRNEKIRT 829
            +  I APP+DT+ +PICS+GSVFIH+DMKTLK WG + SNDAWW+ NVL+PFS+E N KCL S+E+ +YAS+EQGYLSSLL++GP +C     ++FLTDGVQIKLL  TL++TR++FSGSS LNE  YSK+PRAD PL  LL++  G Y I  +S   S  +  D+VVMSADPGQAKVI V SA +  W KKDP  ILKT TCV GDDY RR+T AS SDEYET RR    YG AIDRLR+EK RT
Sbjct:  354 RGDIIAPPRDTSVLPICSTGSVFIHVDMKTLKSWGLFHSNDAWWYKNVLRPFSREANIKCLRSRENTRYASSEQGYLSSLLDNGPAKCPWFVGESFLTDGVQIKLLLVTLEHTRESFSGSSQLNEEGYSKLPRADAPLETLLEKGRGVYNI--SSLVESESIRGDLVVMSADPGQAKVINVCSATSETWEKKDPVAILKTSTCVFGDDY-RRETLASHSDEYETLRRRGTSYGIAIDRLRDEKKRT 596
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BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 2.490e-39
Identity = 86/144 (59.72%), Postives = 105/144 (72.92%), Query Frame = 2 
Query:  206 GFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYLSSLLESGPTRCSV---KAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSKVPRADIPLSGLLKRV-GAYTIF*ASQPSSSHVPVDVVVMSADPGQAKV 625
            G   SNDAWW+ +VL+PFSKE N KCL ++E+ +YAS+E GYLSSL  SGP +C     ++FLTDGVQIKLL  TL++ RKAFSGSS LNEA Y+K+PRAD  L  LLK   G Y I  +S   S+ +  DV+VMSADPGQAKV
Sbjct:  579 GLLHSNDAWWYKDVLRPFSKEANIKCLVNKENARYASSEHGYLSSLQGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFSGSSELNEAGYNKLPRADAQLESLLKEGRGVYNI--SSLLESTSIREDVIVMSADPGQAKV 720
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9875.17875.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
DDE_Tnp_16.850e-9467.34domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
EsV-1-178/2223.680e-9266.39paralog 1 n=1 Tax=Ectocarpus siliculosus virus 1 T... [more]
EsV-1-178/2222.780e-9066.39paralog 2 n=2 Tax=Ectocarpus siliculosus virus 1 T... [more]
DDE_Tnp_16.110e-9065.56domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
FirrV-1-M11.300e-8963.01n=1 Tax=Feldmannia irregularis virus a TaxID=23199... [more]
Uncharacterized2.490e-3959.72protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9875contigE_fasciculatus_S2_contig9875:2128..2993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size866
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842630.3672278-UTR-E_fasciculatus_S2_contig9875:2127..24431696842630.3672278-UTR-E_fasciculatus_S2_contig9875:2127..2443Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9875 2128..2443 -
1696842630.395732-UTR-E_fasciculatus_S2_contig9875:2809..29931696842630.395732-UTR-E_fasciculatus_S2_contig9875:2809..2993Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9875 2810..2993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842630.3778305-CDS-E_fasciculatus_S2_contig9875:2443..28091696842630.3778305-CDS-E_fasciculatus_S2_contig9875:2443..2809Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9875 2444..2809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9875.17875.1prot_E_fasciculatus_S2_contig9875.17875.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9875 2444..2809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9875.17875.1

>prot_E_fasciculatus_S2_contig9875.17875.1 ID=prot_E_fasciculatus_S2_contig9875.17875.1|Name=mRNA_E_fasciculatus_S2_contig9875.17875.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=122bp
MKTLKHWGFWPSNDAWWFNNVLQPFSKEGNTKCLGSQESVKYASNEQGYL
SSLLESGPTRCSVKAFLTDGVQIKLLPATLDYTRKAFSGSSPLNEAEYSK
VPRADIPLSGLLKRVGAYTIF*
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mRNA from alignment at E_fasciculatus_S2_contig9875:2128..2993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9875.17875.1 ID=mRNA_E_fasciculatus_S2_contig9875.17875.1|Name=mRNA_E_fasciculatus_S2_contig9875.17875.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=866bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9875:2128..2993- (Ectocarpus fasciculatus EfasUO2)
GTATACGAAGAAACCGTGTCTCGATCTCACTCGCAATTCCCCGGAGAAGA
CAAGGTGTCCAGGGAGCGGAGGTTTGAGTTCGTTAAGAAGGAGTTAGGGG
GAGAAAGCATCTATCTGTGCTCCGCCGAAAGACACCGCCCCGGTACCCAT
CTGCTCGTCAGGGTCGGTGTTCATCCACATCGACATGAAAACGCTCAAGC
ACTGGGGCTTCTGGCCTTCTAACGATGCCTGGTGGTTCAACAACGTCCTG
CAGCCTTTCTCGAAAGAGGGTAACACCAAGTGCCTCGGGAGCCAGGAGAG
TGTCAAGTACGCTTCAAATGAACAGGGGTACCTATCGAGTCTCCTAGAGA
GTGGTCCGACCCGATGCTCGGTGAAAGCTTTTTTGACGGACGGCGTTCAG
ATCAAGCTGCTCCCCGCTACCCTTGACTACACGAGAAAGGCGTTCTCCGG
GTCCAGTCCTCTTAACGAGGCGGAATACAGCAAGGTGCCTCGTGCTGATA
TACCACTGAGTGGTCTTTTAAAAAGGGTAGGGGCGTATACAATATTCTGA
GCGTCCCAACCAAGTTCTTCGCATGTACCGGTAGATGTTGTGGTAATGTC
GGCGGACCCGGGTCAGGCTAAGGTCATCACCGTTTCGTCGGCCAAGGCCG
GTGTTTGGGCCAAGAAGGATCCGGACGTGATTCTAAAAACTTTGACGTGT
GTTTTGGGGGATGACTATTATCGTAGAGACACCCGCGCTTCCCGTTCGGA
CGAGTACGAGACCTCCAGGAGAACGGATCGTCCATATGGGAGAGCCATCG
ATCGTCTGCGAAACGAGAAGATAAGGACATACATCGTGTCTTGACACCTT
CATCCGGTACTGCAGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9875:2128..2993-

>mRNA_E_fasciculatus_S2_contig9875.17875.1 ID=mRNA_E_fasciculatus_S2_contig9875.17875.1|Name=mRNA_E_fasciculatus_S2_contig9875.17875.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=366bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9875:2128..2993- (Ectocarpus fasciculatus EfasUO2)
ATGAAAACGCTCAAGCACTGGGGCTTCTGGCCTTCTAACGATGCCTGGTG
GTTCAACAACGTCCTGCAGCCTTTCTCGAAAGAGGGTAACACCAAGTGCC
TCGGGAGCCAGGAGAGTGTCAAGTACGCTTCAAATGAACAGGGGTACCTA
TCGAGTCTCCTAGAGAGTGGTCCGACCCGATGCTCGGTGAAAGCTTTTTT
GACGGACGGCGTTCAGATCAAGCTGCTCCCCGCTACCCTTGACTACACGA
GAAAGGCGTTCTCCGGGTCCAGTCCTCTTAACGAGGCGGAATACAGCAAG
GTGCCTCGTGCTGATATACCACTGAGTGGTCTTTTAAAAAGGGTAGGGGC
GTATACAATATTCTGA
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