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Homology
BLAST of mRNA_E_fasciculatus_S2_contig9868.17866.1 vs.
Match: PTIF2, (plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI) HSP 1 Score: 226 bits (576), Expect = 2.160e-66 Identity = 123/128 (96.09%), Postives = 124/128 (96.88%), Query Frame = 1 Query: 7 GGGLDYASPPTEKRATFKEDKKKIKGYEGKNVPDKASQSVLRGRKDRLQAESLDEELYDDDGADLSTDDDLFGAATAAATAMLGEAAEKVVEPSTKPKAVASTPVERIQPTGGRQAQAQALKAAGRPI 390
GGGLDYA PPTEKR TFKEDKKK+KGYE KNVPDKASQSVLRGRKDRLQAESLDEELYDDDGADLSTDDDLFGAATAAATAMLGEAAEKV EPSTKPKAVASTPVERIQPTGGRQAQAQALKAAGRPI
Sbjct: 266 GGGLDYA-PPTEKRTTFKEDKKKVKGYESKNVPDKASQSVLRGRKDRLQAESLDEELYDDDGADLSTDDDLFGAATAAATAMLGEAAEKVAEPSTKPKAVASTPVERIQPTGGRQAQAQALKAAGRPI 392
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 0 |
| Seed ortholog score | 228.4 |
| Seed ortholog evalue | 2e-57 |
| Seed eggNOG ortholog | 2880.D7FJE9 |
| Model size | 407 |
| KEGG ko | ko:K02519 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464 |
| Exons | 4 |
| EggNOG free text desc. | translation initiation factor activity |
| EggNOG OGs | COG0532@1,KOG1145@2759 |
| Cds size | 405 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03012,ko03029 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842629.5978367-CDS-E_fasciculatus_S2_contig9868:129..176 | 1696842629.5978367-CDS-E_fasciculatus_S2_contig9868:129..176 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9868 130..176 + |
| 1696842629.611799-CDS-E_fasciculatus_S2_contig9868:1734..1807 | 1696842629.611799-CDS-E_fasciculatus_S2_contig9868:1734..1807 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9868 1735..1807 + |
| 1696842629.6220703-CDS-E_fasciculatus_S2_contig9868:2071..2175 | 1696842629.6220703-CDS-E_fasciculatus_S2_contig9868:2071..2175 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9868 2072..2175 + |
| 1696842629.6320262-CDS-E_fasciculatus_S2_contig9868:2504..2685 | 1696842629.6320262-CDS-E_fasciculatus_S2_contig9868:2504..2685 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9868 2505..2685 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9868.17866.1 >prot_E_fasciculatus_S2_contig9868.17866.1 ID=prot_E_fasciculatus_S2_contig9868.17866.1|Name=mRNA_E_fasciculatus_S2_contig9868.17866.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=135bp
GNGGGLDYASPPTEKRATFKEDKKKIKGYEGKNVPDKASQSVLRGRKDRL
QAESLDEELYDDDGADLSTDDDLFGAATAAATAMLGEAAEKVVEPSTKPK
AVASTPVERIQPTGGRQAQAQALKAAGRPIPGRGR back to topmRNA from alignment at E_fasciculatus_S2_contig9868:130..2686+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig9868.17866.1 ID=mRNA_E_fasciculatus_S2_contig9868.17866.1|Name=mRNA_E_fasciculatus_S2_contig9868.17866.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2557bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9868:130..2686+ (Ectocarpus fasciculatus EfasUO2)
GGGAACGGGGGCGGCCTCGACTATGCTTCTCCCCCCACGGAGAAACGGTG
AGGATCCGGTCGATTTAGGCGGGCGGGCACATGGTTGGTGAAGTACTGCA
GTAGGAAGGGATATGCCGGCGCCAAGAGGCTCAAGAAGAACGAGAGAGAT
TGCCGTGATCGAGAGGCGAACATGTGGAACTCTTACTGTAGGGGAGTCGC
GCGAGGTGGGGGGGGGGGCTTGCCGCTCTTGGCGCGATCCTGTGTTTGAG
CTTGACCGCTACTTGCTGTGAGCCAATCGCTTCGTTTCGTTCTTGTGGTT
GTGATTGGCACGCCCATGCGGAACCAAGTAGTGCGTCCTGTTGTGCTCTA
CCGTTTGGTCCGGTGACGGGAGGGAGGGAAAGGAGGCACGCTTGTTGATA
TGTAACTCGGGTTTATGACATGGGCGGAACTCGCGCTAGTGCTGGGGTGT
ATGAGGTACGCCTTGCACGATATAGGACATGTCGTGCCTATGGAAATGGT
CGGTATTACGGCAGGGTTAATTACGATTTGGTGGCCTTACGCCTAATGGT
ATCGAGCAGCATGCTAAAGGGTACCTAGCACTGCGTGTGGACAAGGCTTT
TCGGCGAGAACAACATTGCGCGTTTAGTAGTAGGAGTTCGTGTAGTGTAC
TTCGGCTTGGGTCACTTTTGTTGGAGGTTATCGTTTGTTGTTGGCACTCC
AACCCGAATCCCTCTACTTGACGCACAATGTTATTCTCGGCTGTTGTCTG
TTCTTTTTTGTTTTTGGTATAGTTGTAATTTCCGGGTATGACCCGCGGGT
GCCGAACGCTTACATATCGTCGCGCTCTTGTTTTTTTCCCTTCTGCACGC
ATGTCGACCGTGTGCTTTCGTGCGACTTACGTTTTCCTGACTTTGCGTTG
CACGCGTCAGCCTGTTGGTTGGTGTGGATGATGTTTGCTCTATGGACGAC
GGTGGCGTTATTCTCACGTGTAAGCTCTATTGTTGCCGCGTCGAAGTTCT
TTGTATTGTGTGTTCCTATCAAACTTGTTATATTTGATCTTGAAACAGCC
GAACATGGTTATTTTCGTTCTATACGAGCATGTTTATTTCGCATCCCCCC
CAGTCGCAGCCCCCAGTCGCAGCCTGCACCCTGTGGTCTTGCCTTCCTAC
CTATATGGGGGCACGCAGACGGAATGTTTGAATGTTTCCTCCGCGATTCG
TACCTTGCCTTTCACTTGCAGTTTCGCCTTTTGTCTCGTATGACGTAGAC
CACGCACCGGGTTTCGGTGCATGGACGTCTTTCTCTCGGTTTTGTGCGCG
CGAAAGGCGTATGAGATGAGCAGGCTGCACTTTTGCGGAGGCCGTTTTCT
GTCGTTGTGTCGCCTTTCTCTCACCTAGAGTTGTTATTTACTTCGAAGTA
GATGGTTGTGGTTTACGTTCGAAAGCCGATCCCTGCGTAGGAAAACGTTG
ACTCTTCCGCCGTAAAGCAAGAGAGTCGGAGGATTGCGAGCCTCCGATGC
TCAATAGGTCGCTTGTTGAATGTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTACCAACCACGTGTATCTGTTGTCTGTTGTCTGTTTGTGTCG
CAAAGGGCGACTTTCAAGGAGGACAAGAAGAAGATCAAAGGCTACGAGGG
CAAGAACGTGCCGGACAAGGCATCTCAGGTCAGAGAGTGCTGTAGTGCTG
CCCTAGCACCAAACGTGTTTAATAAAACGCTTCGTTTGTGACTGTTTTTT
CTCGTAGGTGCCGTGGCGTAGTGCTGTTGGGGGTGATGATCATGTTGGGC
ATCATTTTCAAAACCTCCGCACGTTGGTCCACTCAGGGTCATGTTTTTTG
CATGCTCAAGCCCCCACTCCACTTTTATTACGTTCTCGCCTCGCATGTCA
TGGCTTGACCCCGTGTCTTTCATCTTGTCATGTTTATTTCAGTCGGTTCT
GAGGGGGCGCAAGGATAGGCTACAGGCGGAATCCTTGGACGAAGAGCTGT
ACGATGATGACGGTGCTGATCTCAGCACTGACGATGATCTGTTCGGGTAA
GCTCACCGCTGTCGGTACTTTTTTGGGTACTTTGTGTGCTGCTGCTGTCG
GTGTGGTTGTTGGTGTTGAGTGTTGCTCCGTCAGGTGATGGTGTTGCTGC
TTAAGTTCTGCAAGTGAAAGTGAGTGACTTGGATGATCGAGAGAGAGCTA
GCTCCCTTTTGTGATGCCGTTGGTTACCTTCGCTCTTTCTTTGTTGCGGC
GCTGGGACGCTGGGACTCTCGTTCCTTGTTCCCCGTCCACCCTAACTCTC
CGCATTTATCTCGCTGTGCTGTCGCTGCCGGCTTTGTACTCGCCGCCTTC
ATCACAACACCCCACCACCAACCAGTGCGGCCACCGCTGCCGCCACAGCG
ATGCTGGGCGAGGCCGCCGAGAAGGTAGTAGAGCCTAGCACCAAGCCCAA
GGCAGTCGCCTCGACCCCCGTGGAGCGGATCCAGCCCACAGGGGGCCGCC
AGGCTCAGGCACAGGCGCTCAAGGCGGCCGGGAGGCCGATCCCCGGGCGG
GGTCGCG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig9868:130..2686+ >mRNA_E_fasciculatus_S2_contig9868.17866.1 ID=mRNA_E_fasciculatus_S2_contig9868.17866.1|Name=mRNA_E_fasciculatus_S2_contig9868.17866.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9868:130..2686+ (Ectocarpus fasciculatus EfasUO2)
GGGAACGGGGGCGGCCTCGACTATGCTTCTCCCCCCACGGAGAAACGGGC
GACTTTCAAGGAGGACAAGAAGAAGATCAAAGGCTACGAGGGCAAGAACG
TGCCGGACAAGGCATCTCAGTCGGTTCTGAGGGGGCGCAAGGATAGGCTA
CAGGCGGAATCCTTGGACGAAGAGCTGTACGATGATGACGGTGCTGATCT
CAGCACTGACGATGATCTGTTCGGTGCGGCCACCGCTGCCGCCACAGCGA
TGCTGGGCGAGGCCGCCGAGAAGGTAGTAGAGCCTAGCACCAAGCCCAAG
GCAGTCGCCTCGACCCCCGTGGAGCGGATCCAGCCCACAGGGGGCCGCCA
GGCTCAGGCACAGGCGCTCAAGGCGGCCGGGAGGCCGATCCCCGGGCGGG
GTCGC back to top
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