mRNA_E_fasciculatus_S2_contig9868.17866.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9868.17866.1
Unique Name	mRNA_E_fasciculatus_S2_contig9868.17866.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9868.17866.1 vs.
Match: PTIF2, (plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 2.160e-66
Identity = 123/128 (96.09%), Postives = 124/128 (96.88%), Query Frame = 1

Query:    7 GGGLDYASPPTEKRATFKEDKKKIKGYEGKNVPDKASQSVLRGRKDRLQAESLDEELYDDDGADLSTDDDLFGAATAAATAMLGEAAEKVVEPSTKPKAVASTPVERIQPTGGRQAQAQALKAAGRPI 390
            GGGLDYA PPTEKR TFKEDKKK+KGYE KNVPDKASQSVLRGRKDRLQAESLDEELYDDDGADLSTDDDLFGAATAAATAMLGEAAEKV EPSTKPKAVASTPVERIQPTGGRQAQAQALKAAGRPI
Sbjct:  266 GGGLDYA-PPTEKRTTFKEDKKKVKGYESKNVPDKASQSVLRGRKDRLQAESLDEELYDDDGADLSTDDDLFGAATAAATAMLGEAAEKVAEPSTKPKAVASTPVERIQPTGGRQAQAQALKAAGRPI 392

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9868.17866.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9868.17866.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
PTIF2,	2.160e-66	96.09	plastid translation intiation factor 2 n=2 Tax=Ect...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9868	contig	E_fasciculatus_S2_contig9868:130..2686 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	228.4
Seed ortholog evalue	2e-57
Seed eggNOG ortholog	2880.D7FJE9
Model size	407
KEGG ko	ko:K02519
Hectar predicted targeting category	other localisation
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons	4
EggNOG free text desc.	translation initiation factor activity
EggNOG OGs	COG0532@1,KOG1145@2759
Cds size	405
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03012,ko03029

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842629.5978367-CDS-E_fasciculatus_S2_contig9868:129..176	1696842629.5978367-CDS-E_fasciculatus_S2_contig9868:129..176	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9868 130..176 +
1696842629.611799-CDS-E_fasciculatus_S2_contig9868:1734..1807	1696842629.611799-CDS-E_fasciculatus_S2_contig9868:1734..1807	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9868 1735..1807 +
1696842629.6220703-CDS-E_fasciculatus_S2_contig9868:2071..2175	1696842629.6220703-CDS-E_fasciculatus_S2_contig9868:2071..2175	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9868 2072..2175 +
1696842629.6320262-CDS-E_fasciculatus_S2_contig9868:2504..2685	1696842629.6320262-CDS-E_fasciculatus_S2_contig9868:2504..2685	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9868 2505..2685 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9868.17866.1	prot_E_fasciculatus_S2_contig9868.17866.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9868 130..2685 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9868:130..2686+
coding sequence from alignment at E_fasciculatus_S2_contig9868:130..2686+

protein sequence of mRNA_E_fasciculatus_S2_contig9868.17866.1

>prot_E_fasciculatus_S2_contig9868.17866.1 ID=prot_E_fasciculatus_S2_contig9868.17866.1|Name=mRNA_E_fasciculatus_S2_contig9868.17866.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=135bp
GNGGGLDYASPPTEKRATFKEDKKKIKGYEGKNVPDKASQSVLRGRKDRL
QAESLDEELYDDDGADLSTDDDLFGAATAAATAMLGEAAEKVVEPSTKPK
AVASTPVERIQPTGGRQAQAQALKAAGRPIPGRGR

mRNA from alignment at E_fasciculatus_S2_contig9868:130..2686+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9868.17866.1 ID=mRNA_E_fasciculatus_S2_contig9868.17866.1|Name=mRNA_E_fasciculatus_S2_contig9868.17866.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2557bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9868:130..2686+ (Ectocarpus fasciculatus EfasUO2)
GGGAACGGGGGCGGCCTCGACTATGCTTCTCCCCCCACGGAGAAACGGTG
AGGATCCGGTCGATTTAGGCGGGCGGGCACATGGTTGGTGAAGTACTGCA
GTAGGAAGGGATATGCCGGCGCCAAGAGGCTCAAGAAGAACGAGAGAGAT
TGCCGTGATCGAGAGGCGAACATGTGGAACTCTTACTGTAGGGGAGTCGC
GCGAGGTGGGGGGGGGGGCTTGCCGCTCTTGGCGCGATCCTGTGTTTGAG
CTTGACCGCTACTTGCTGTGAGCCAATCGCTTCGTTTCGTTCTTGTGGTT
GTGATTGGCACGCCCATGCGGAACCAAGTAGTGCGTCCTGTTGTGCTCTA
CCGTTTGGTCCGGTGACGGGAGGGAGGGAAAGGAGGCACGCTTGTTGATA
TGTAACTCGGGTTTATGACATGGGCGGAACTCGCGCTAGTGCTGGGGTGT
ATGAGGTACGCCTTGCACGATATAGGACATGTCGTGCCTATGGAAATGGT
CGGTATTACGGCAGGGTTAATTACGATTTGGTGGCCTTACGCCTAATGGT
ATCGAGCAGCATGCTAAAGGGTACCTAGCACTGCGTGTGGACAAGGCTTT
TCGGCGAGAACAACATTGCGCGTTTAGTAGTAGGAGTTCGTGTAGTGTAC
TTCGGCTTGGGTCACTTTTGTTGGAGGTTATCGTTTGTTGTTGGCACTCC
AACCCGAATCCCTCTACTTGACGCACAATGTTATTCTCGGCTGTTGTCTG
TTCTTTTTTGTTTTTGGTATAGTTGTAATTTCCGGGTATGACCCGCGGGT
GCCGAACGCTTACATATCGTCGCGCTCTTGTTTTTTTCCCTTCTGCACGC
ATGTCGACCGTGTGCTTTCGTGCGACTTACGTTTTCCTGACTTTGCGTTG
CACGCGTCAGCCTGTTGGTTGGTGTGGATGATGTTTGCTCTATGGACGAC
GGTGGCGTTATTCTCACGTGTAAGCTCTATTGTTGCCGCGTCGAAGTTCT
TTGTATTGTGTGTTCCTATCAAACTTGTTATATTTGATCTTGAAACAGCC
GAACATGGTTATTTTCGTTCTATACGAGCATGTTTATTTCGCATCCCCCC
CAGTCGCAGCCCCCAGTCGCAGCCTGCACCCTGTGGTCTTGCCTTCCTAC
CTATATGGGGGCACGCAGACGGAATGTTTGAATGTTTCCTCCGCGATTCG
TACCTTGCCTTTCACTTGCAGTTTCGCCTTTTGTCTCGTATGACGTAGAC
CACGCACCGGGTTTCGGTGCATGGACGTCTTTCTCTCGGTTTTGTGCGCG
CGAAAGGCGTATGAGATGAGCAGGCTGCACTTTTGCGGAGGCCGTTTTCT
GTCGTTGTGTCGCCTTTCTCTCACCTAGAGTTGTTATTTACTTCGAAGTA
GATGGTTGTGGTTTACGTTCGAAAGCCGATCCCTGCGTAGGAAAACGTTG
ACTCTTCCGCCGTAAAGCAAGAGAGTCGGAGGATTGCGAGCCTCCGATGC
TCAATAGGTCGCTTGTTGAATGTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTACCAACCACGTGTATCTGTTGTCTGTTGTCTGTTTGTGTCG
CAAAGGGCGACTTTCAAGGAGGACAAGAAGAAGATCAAAGGCTACGAGGG
CAAGAACGTGCCGGACAAGGCATCTCAGGTCAGAGAGTGCTGTAGTGCTG
CCCTAGCACCAAACGTGTTTAATAAAACGCTTCGTTTGTGACTGTTTTTT
CTCGTAGGTGCCGTGGCGTAGTGCTGTTGGGGGTGATGATCATGTTGGGC
ATCATTTTCAAAACCTCCGCACGTTGGTCCACTCAGGGTCATGTTTTTTG
CATGCTCAAGCCCCCACTCCACTTTTATTACGTTCTCGCCTCGCATGTCA
TGGCTTGACCCCGTGTCTTTCATCTTGTCATGTTTATTTCAGTCGGTTCT
GAGGGGGCGCAAGGATAGGCTACAGGCGGAATCCTTGGACGAAGAGCTGT
ACGATGATGACGGTGCTGATCTCAGCACTGACGATGATCTGTTCGGGTAA
GCTCACCGCTGTCGGTACTTTTTTGGGTACTTTGTGTGCTGCTGCTGTCG
GTGTGGTTGTTGGTGTTGAGTGTTGCTCCGTCAGGTGATGGTGTTGCTGC
TTAAGTTCTGCAAGTGAAAGTGAGTGACTTGGATGATCGAGAGAGAGCTA
GCTCCCTTTTGTGATGCCGTTGGTTACCTTCGCTCTTTCTTTGTTGCGGC
GCTGGGACGCTGGGACTCTCGTTCCTTGTTCCCCGTCCACCCTAACTCTC
CGCATTTATCTCGCTGTGCTGTCGCTGCCGGCTTTGTACTCGCCGCCTTC
ATCACAACACCCCACCACCAACCAGTGCGGCCACCGCTGCCGCCACAGCG
ATGCTGGGCGAGGCCGCCGAGAAGGTAGTAGAGCCTAGCACCAAGCCCAA
GGCAGTCGCCTCGACCCCCGTGGAGCGGATCCAGCCCACAGGGGGCCGCC
AGGCTCAGGCACAGGCGCTCAAGGCGGCCGGGAGGCCGATCCCCGGGCGG
GGTCGCG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9868:130..2686+

>mRNA_E_fasciculatus_S2_contig9868.17866.1 ID=mRNA_E_fasciculatus_S2_contig9868.17866.1|Name=mRNA_E_fasciculatus_S2_contig9868.17866.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9868:130..2686+ (Ectocarpus fasciculatus EfasUO2)
GGGAACGGGGGCGGCCTCGACTATGCTTCTCCCCCCACGGAGAAACGGGC
GACTTTCAAGGAGGACAAGAAGAAGATCAAAGGCTACGAGGGCAAGAACG
TGCCGGACAAGGCATCTCAGTCGGTTCTGAGGGGGCGCAAGGATAGGCTA
CAGGCGGAATCCTTGGACGAAGAGCTGTACGATGATGACGGTGCTGATCT
CAGCACTGACGATGATCTGTTCGGTGCGGCCACCGCTGCCGCCACAGCGA
TGCTGGGCGAGGCCGCCGAGAAGGTAGTAGAGCCTAGCACCAAGCCCAAG
GCAGTCGCCTCGACCCCCGTGGAGCGGATCCAGCCCACAGGGGGCCGCCA
GGCTCAGGCACAGGCGCTCAAGGCGGCCGGGAGGCCGATCCCCGGGCGGG
GTCGC