mRNA_E_fasciculatus_S2_contig9851.17859.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9851.17859.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI) HSP 1 Score: 963 bits (2490), Expect = 0.000e+0 Identity = 617/874 (70.59%), Postives = 632/874 (72.31%), Query Frame = 1 Query: 1 KMALLPKMVSVMKSYAGQRAADGAQAASNGGXXXXXXXXXXHGAARATXXXXSAAVSFQPRAALSCLRVLCAVGGRAPWAAERVASEPGLLDAVREAFLEPRADGTLPFDLSETATTT------------PPSQESATSARVEGKARRGRAGGPTGSPPPP-QEQLALLAVRLAKVLVQSGRGVALALSRTPLLGSTKGWLALGQGSRRTLPALEAVQREVLELWRCCLSYGIDVAAADTVVLVARGQGWWPGLSGGVG------------------------------------------------------DGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLPPRLAFYRALHQLACACVLPPGGDAAGRNXXXXXXXXXXXXXKAGVGAAGAGAREETESFSVGGVAVVPESWADVGDTVDAAVEAALLWLLSGARGXXXXXXXXTPETAQQAAAVHLVACWVERYQAMSRTAGRRASRHLESTVEDAAVLFSSLLASPALPLPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-GLDWLSGVFRLGLACERAVPGEAAAALASAPEATAXXXXXXXXXXXXXXXXX--------------ASPPAAFLRRVRRADAGARWLGCRLLALGCRGGVRGAGWPWAALRRDCALQAMALCERGDEAIAVGLLAEALPGSTVDSPAEEGSKRPNGDPAAAASXXXXXXXXASASLLRTLFRGAISDPVALSQSSFHLDGRWASLQSLKACAPPGTASLLPLPPHWLFLPLASQASFGGGKAAATAVSACLSLLVQLEREESAYVWGGGXXXXXXXXXTGCVSPEVKLYHLANACLYGASVLSGLGAVQNFDWLFGRY 2376
+MALLPK+ SV+KSYA Q AADGAQAAS+GG HGAARAT + AVSF+PRAALSCLRVLCAV GRAPWAAERVASEPGLLDAVREAFLEPRADGTLP DLSETA T PP QE ATSAR EGKAR G PP QEQLALLAVRLA+VLVQSGRGVALALS+TPLLGSTKGWLALGQGSRR LPALEAVQREVLELWRCCLSYG+DVAAADTVVLVARGQGWWPGLSGGVG XXXX DSLPPRLAFYRALHQLACACVLPPG AAGRN KAG GAAG G R+E E FSVGGVAVVPESWADVGDTVDAAVE ALLWLLSG RG XX ETAQQAAAVHLVACWVERYQAMSRT GRR SRHLEST EDAAVLFSSLLASPALPLPAAVA XXXXXXXXXXX A GLDWLSGVFRLGLACERAVPGEAAAALASAPEATAXXXXXXXXXXXXXXXXX A PPA FLRRVRRA+AGARWLGCRLLALGCRGG R GWPWAALRRDCALQAMALCERGDEAIAVGLLAEALPGSTVDSP EEGS+RP+ DPAAAA AS SLLR LFRGAISDPVALSQSSFHLDGRWASLQSLKAC PPGTASLLPLPPHWLFLPLASQ GG KAA+TAVSACLSLLVQLEREESAYVW GG X TGCVSPEVKLYHLANACLYGASVLSGLG VQ+FDWLF RY
Sbjct: 591 EMALLPKIASVIKSYADQVAADGAQAASDGGGGLGDKGSF-HGAARATAA--ATAVSFRPRAALSCLRVLCAVAGRAPWAAERVASEPGLLDAVREAFLEPRADGTLPLDLSETAPATVTATAIPKQLSPPPPQEPATSARAEGKARTEGPRDANGCPPXXXQEQLALLAVRLARVLVQSGRGVALALSQTPLLGSTKGWLALGQGSRRPLPALEAVQREVLELWRCCLSYGVDVAAADTVVLVARGQGWWPGLSGGVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGEEPTAXXXXXXXXXXXXXXXXXXXXXXXVGAQSSSGVAQSTSGGAGGGSRGGDSLPPRLAFYRALHQLACACVLPPGVSAAGRNKNDGAETAGGDG-KAGAGAAGTGVRKEAEGFSVGGVAVVPESWADVGDTVDAAVEGALLWLLSGVRGGGRVGGXXAAETAQQAAAVHLVACWVERYQAMSRTIGRRGSRHLESTAEDAAVLFSSLLASPALPLPAAVAATTAVTRRGDQXXXXXXXXXXXSGDGFSQRGVSSGEAAAAAGLDWLSGVFRLGLACERAVPGEAAAALASAPEATAXXXXXXXXXXXXXXXXXXXXXXXXXXPTAAVAPPPATFLRRVRRAEAGARWLGCRLLALGCRGGGREGGWPWAALRRDCALQAMALCERGDEAIAVGLLAEALPGSTVDSPEEEGSERPSDDPAAAA----VGTAAASTSLLRMLFRGAISDPVALSQSSFHLDGRWASLQSLKACTPPGTASLLPLPPHWLFLPLASQ---GGEKAASTAVSACLSLLVQLEREESAYVWSGGGXGG-----TGCVSPEVKLYHLANACLYGASVLSGLGVVQHFDWLFSRY 1448
BLAST of mRNA_E_fasciculatus_S2_contig9851.17859.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML9_9PHAE) HSP 1 Score: 928 bits (2399), Expect = 0.000e+0 Identity = 599/858 (69.81%), Postives = 617/858 (71.91%), Query Frame = 1 Query: 4 MALLPKMVSVMKSYAGQRAADGAQAASNGGXXXXXXXXXXHGAARATXXXXSAAVSFQPRAALSCLRVLCAVGGRAPWAAERVASEPGLLDAVREAFLEPRADGTLPFDLSETA--TTTP-----PSQESATSARVEGKARRGRAGGPTGSPPPP--QEQLALLAVRLAKVLVQSGRGVALALSRTPLLGSTKGWLALGQGSRRTLPALEAVQREVLELWRCCLSYGIDVAAADTVVLVARGQGWWPGLS-GGVG----------------------DGA--------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLPPRLAFYRALHQLACACVLPPGGDAAGRNXXXXXXXXXXXXXKAGVGAAGAGAREETESFSVGGVAVVPESWADVGDTVDAAVEAALLWLLSGARGXXXXXXXXTPETAQQAAAVHLVACWVERYQAMSRTAGRRASRHLESTVEDAAVLFSSLLASPALPLPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AGLDWLSGVFRLGLACERAVPGEAAAALASAPEATAXXXXXXXXXXXXXXXXX-------------ASPPAAFLRRVRRADAGARWLGCRLLALGCRGGVRGAGWPWAALRRDCALQAMALCERGDEAIAVGLLAEALPGSTVDSPAEEGSKRPNGDPAAAASXXXXXXXXASASLLRTLFRGAISDPVALSQSSFHLDGRWASLQSLKACAPPGTASLLPLPPHWLFLPLASQASFGGGKAAATAVSACLSLLVQLEREESAYVWGGGXXXXXXXXXTGCVSPEVKLYHLANACLYGASVLSGLGAVQNFDWLFGRY 2376
MALLPK+ SV+KS AGQ +ADGAQA S+GG HGAARAT +AAVS +PRAALSCLRVLCAV GRAPWAAERVASEPGLLDAVREAFLEPR DGTLP DLSE A TTT P QE AT AR EGKAR G G G P QE LALLAVRLA+VLVQSGRGVALALS+TPLLGSTKGWLALGQGSRR LPALEAVQREVLELWRCCLSYGIDVAAADTVVLVARGQGWWPGLS GGVG DG DS+PPRLAFYRALHQLACACVLPPGG+AAGRN KAGVGAAGAG R+E E FSVGGV VVPESWADVGDTVDAAVEA LLWLL RG T ETAQQAAAVHLVACW+ERYQAMSRTAGRRAS HLES EDAAVLFSSLLAS ALPL AAVA XXXXXXXXXXXXXX AGLDWL GVFRLGLACERA+PGEAAAALASAPEATA XX A PPA FLRRVRRA+AGARWLGCRLLAL RG RG GWPWAALRRDCALQAMALCERGDEAIAVGLLAEALPGSTVDSPAE GS+RP+ DPAA XXXXXX SASLLRTLFRGAISDPVALSQSSFHLDGRWASLQSLKACAPPGTASLLPLPPHWLFLPL SQ GGGKAA+ AVSACLSLLV+LEREES YVWG XXXXXXX TGC PEVKLYHLANACLYGASVLSGLGAVQNFDWLF RY
Sbjct: 144 MALLPKIASVIKSCAGQVSADGAQAGSDGGGGLGDMGSV-HGAARATAE--AAAVSLRPRAALSCLRVLCAVAGRAPWAAERVASEPGLLDAVREAFLEPRTDGTLPLDLSEAAPATTTKQLSPAPPQEPATPARAEGKARGGGPGDANGCPXXXXXQEGLALLAVRLARVLVQSGRGVALALSQTPLLGSTKGWLALGQGSRRPLPALEAVQREVLELWRCCLSYGIDVAAADTVVLVARGQGWWPGLSVGGVGXXXXXXXXXAPLVADTVTVERGDGGXXXXXXXXXXXXXXXTAATPVAAKSLPVGVGVGGARSTSGGASGGSRGGDSVPPRLAFYRALHQLACACVLPPGGNAAGRNKNDGAETAGGDG-KAGVGAAGAGLRKEAEGFSVGGVVVVPESWADVGDTVDAAVEAVLLWLLRSVRGGGGVDGGGTAETAQQAAAVHLVACWMERYQAMSRTAGRRASGHLESIAEDAAVLFSSLLASSALPLMAAVAAAVTRGCDQSGGGXXXXXXXXXXXXXXSFSQRGVSSGEAVTAGLDWLCGVFRLGLACERAMPGEAAAALASAPEATAAALXXFLATAGPTAGAVXXGGALTTPTAAVAPPPATFLRRVRRAEAGARWLGCRLLALVSRGVGRGGGWPWAALRRDCALQAMALCERGDEAIAVGLLAEALPGSTVDSPAENGSERPSDDPAA-----XXXXXXXSASLLRTLFRGAISDPVALSQSSFHLDGRWASLQSLKACAPPGTASLLPLPPHWLFLPLVSQ---GGGKAASMAVSACLSLLVELEREESTYVWGXXXXXXXXX--TGCNPPEVKLYHLANACLYGASVLSGLGAVQNFDWLFSRY 987
BLAST of mRNA_E_fasciculatus_S2_contig9851.17859.1 vs.
Match: RPAP1_C (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX8_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 4.980e-13 Identity = 265/767 (34.55%), Postives = 320/767 (41.72%), Query Frame = 1 Query: 178 PRAALSCLRVLCAVGGRAPWAAERVASEPGLLDAVREAFLEPRADGTLPFDLSETATTTPPSQESATSARVEGKARRGRAGGPTGSPPPPQEQLALLAVRLAKVLVQSGRGVA---LALSRTPLLGSTKGWLALG-QGSRRTLPALEAVQREVLELWRCCLSYGIDVAAADTVVLVARGQGWWPGLSGGVGDGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLPP-RLAFYRALHQLACACVLPPGGDAAGRNXXXXXXXXXXXXXKAGVGAAGAGAREETESFSVGGVAVVPESWADVGDTVDAAVEAALLWLLSGARGXXXXXXXXTPETAQQAAAVHLVACWVERYQAMSRTAGRRASRHLESTVEDAAVLFSSLLASPALPLPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDWLSGVFRLGLACERAVPGEAAAALASAPEATAXXXXXXXXXXXXXXXXXASPPAAFLRRVRRADA------GARWLGCRLLALGCRGGVRGAGWPWAALRRD-------CALQAMALCERGDEAIA-----VGLLAEALPGSTVDSPAEEGSKRPNGDPAAAASXXXXXXXXASASLLRTLFRGAISDPVALSQS-SFHLDGRWASLQSLK----------ACAPPGTASLLPLPPHWLFLPLASQASFGGGKAAATAVSACLSLLVQLEREESAYVWGGGXXXXXXXXXTGCVSPEVKLYHLANACLYGASVLSGLGAVQNFDWLFGRY 2376
P A+ CLRVL AV + AER+ +EPGLLDAVREAF+EP G P LS G GG TGS + A+ A+RLA+ + R A L R +L + + LALG L A Q E L +W CL YG+ + AA+TV+ +A+ AA XXXXXXXXXXXXXXX S P A YR L LA A P D R A E E + + P++ A + + + AA+ AA L E Q AAA L A RTA L + V L A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DWL V +L LAC+ A P AAA A XXXXXXXXXXXXXXXX L +LA G WP A L C L ++ E G+E A +GL A + V EE K S L L+ G++ + L+ S + H G W SLQSL A A ASLLPLPPHWL LPL S+ G G AA AVS CL LL+ ++ + + ++PE++LYHL AC YG VL+ F L R+
Sbjct: 393 PPGAVECLRVLVAVARSSAANAERIIAEPGLLDAVREAFVEPDTAGAPPVPLS--------------------CGSSGGGGGSTGSGNDVERSPAVWALRLARAVCHGSRLAARHVLYGGRGGILDAAQALLALGGXXXXXXXXVLAAAQCEALAVWHACLRYGLALEAAETVLPLAQAL-------------AAPRSAAXXXXXXXXXXXXXXXGHQWGALTSSRSPIAAALYRCLVALAYAST-PLPQDVIDR----------------------ASEPERLELEADAKLRPAPQALAALRERM-AAIAAATL-----------------AELQQAAAAQELSA----------RTAAFAPMLQLVAAV---------------LATQPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADWLCIVCQLLLACDSAQPEACAAAXXXXSNADVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEALHACVLARGL--------WPLAVLPAARAGAVAACPLFMVSEFEAGEEYPAAQMMLLGLRAGVAGSAEVQQGVEEDDKP-------------------SLPFLEALYCGSMCEVATLAHSRALHTGGAWHSLQSLTLRQRQHAVGAAAAAAEPASLLPLPPHWLLLPLTSR---GSGAAAVRAVSQCLRLLLSVDESPALSTY------------MRALAPELRLYHLMAACTYGQGVLADPAVAPPFRALLSRW 1018 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9851.17859.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9851.17859.1 >prot_E_fasciculatus_S2_contig9851.17859.1 ID=prot_E_fasciculatus_S2_contig9851.17859.1|Name=mRNA_E_fasciculatus_S2_contig9851.17859.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=791bp MALLPKMVSVMKSYAGQRAADGAQAASNGGSGGLGDKGGFHGAARATAAAback to top mRNA from alignment at E_fasciculatus_S2_contig9851:434..5624+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9851.17859.1 ID=mRNA_E_fasciculatus_S2_contig9851.17859.1|Name=mRNA_E_fasciculatus_S2_contig9851.17859.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5191bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9851:434..5624+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9851:434..5624+ >mRNA_E_fasciculatus_S2_contig9851.17859.1 ID=mRNA_E_fasciculatus_S2_contig9851.17859.1|Name=mRNA_E_fasciculatus_S2_contig9851.17859.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2373bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9851:434..5624+ (Ectocarpus fasciculatus EfasUO2)back to top |