Homology
BLAST of mRNA_E_fasciculatus_S2_contig985.17856.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNR4_9PHAE)
HSP 1 Score: 216 bits (549), Expect = 1.080e-66
Identity = 113/121 (93.39%), Postives = 118/121 (97.52%), Query Frame = 3
Query: 3 SKAAAPARAVASRAAPAAPKRGMAGGAAPKYTGWEAQVREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKKKEVAAPVVASSATSSDIPEGYEDNFWQWLEGAGNMEKYLATIDKAQ 365
SKAAAPARAVASRAAPA PKRGMAGGAAP+YTGWEAQ+REKLPKDEHVVVAISGFYVGLYV+ KGISALFSSP+K EVAAPVVASSATSSDIP+GYEDNFWQWLEGAGNMEKYLATIDKAQ
Sbjct: 8 SKAAAPARAVASRAAPAVPKRGMAGGAAPEYTGWEAQIREKLPKDEHVVVAISGFYVGLYVLVKGISALFSSPEK-EVAAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ 127
BLAST of mRNA_E_fasciculatus_S2_contig985.17856.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IDD0_9STRA)
HSP 1 Score: 58.2 bits (139), Expect = 6.960e-7
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 3
Query: 57 PKRGMAGGAAPKYTGWEAQ--VREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKKKEVAAPVVASSATSSDIPEGYEDNFWQWLEGAGNMEKYLATID 356
PKR GGAA +Y VR+ LP+D HVV+AI G Y LY++ K LFS K +S +SS + ++ F +W+ GN+EKY ++
Sbjct: 28 PKR-FGGGAAVEYEPGSPDYIVRQYLPEDRHVVMAICGGYFSLYLLSK----LFSGGKXXXXXXXXXPASTSSSGVKSMADEGFAEWIAVDGNIEKYFKAVE 124
BLAST of mRNA_E_fasciculatus_S2_contig985.17856.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UII2_9STRA)
HSP 1 Score: 57.4 bits (137), Expect = 1.640e-6
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 3
Query: 57 PKRGMAGGAAPKYTGWEAQ--VREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKKKEV---AAPVVASSATSSDIPEGYEDNFWQWLEGAGNMEKYLATID 356
PKR AGGA +Y VR+ LP D+ +VVAI Y G+Y+ +S LFS KKE AAP A++ + + ++ F W+ GN EKYL + +
Sbjct: 39 PKR-FAGGAPTEYAPGSLDYIVRQYLPHDKQIVVAIVSGYFGIYL----LSTLFSGGSKKEETAEAAPAPAAAPAAGGVLSMEDEGFGDWIMQEGNFEKYLNSFE 138
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig985.17856.1 vs.
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.08e-66 / Id = 93.39 Expect = 6.96e-7 / Id = 36.27 Expect = 1.64e-6 / Id = 37.14 Sequence Uncharacterized Hypothetical Hypothetical
Match Name E-value Identity Description
Uncharacterized 1.080e-66 93.39 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more] Hypothetical 6.960e-7 36.27 protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more] Hypothetical 1.640e-6 37.14 protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Model size 1118 Hectar predicted targeting category other localisation Exons 3 Cds size 606
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1696842628.3433561-UTR-E_fasciculatus_S2_contig985:9320..9831 1696842628.3433561-UTR-E_fasciculatus_S2_contig985:9320..9831 Ectocarpus fasciculatus EfasUO2 UTR E_fasciculatus_S2_contig985 9321..9831 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1696842628.3581502-CDS-E_fasciculatus_S2_contig985:9831..10200 1696842628.3581502-CDS-E_fasciculatus_S2_contig985:9831..10200 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig985 9832..10200 - 1696842628.368783-CDS-E_fasciculatus_S2_contig985:11120..11214 1696842628.368783-CDS-E_fasciculatus_S2_contig985:11120..11214 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig985 11121..11214 - 1696842628.3783422-CDS-E_fasciculatus_S2_contig985:12455..12598 1696842628.3783422-CDS-E_fasciculatus_S2_contig985:12455..12598 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig985 12456..12598 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig985.17856.1
>prot_E_fasciculatus_S2_contig985.17856.1 ID=prot_E_fasciculatus_S2_contig985.17856.1|Name=mRNA_E_fasciculatus_S2_contig985.17856.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=202bp
CRRLRHPQGQSRRERRRQPQSAGWRVEQLRSTRAGRPRLGRSFPRTSTWW back to top mRNA from alignment at E_fasciculatus_S2_contig985:9321..12598-
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig985.17856.1 ID=mRNA_E_fasciculatus_S2_contig985.17856.1|Name=mRNA_E_fasciculatus_S2_contig985.17856.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3278bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:9321..12598- (Ectocarpus fasciculatus EfasUO2)TGTCGAAGGCTGCGGCACCCGCAAGGGCAGTCGCGTCGCGAGCGGCGCCG
GCAGCCCCAAAGCGCGGGATGGCGGGTGGAGCAGCTCCGAAGTACACGGG
CTGGGAGGCCCAGGTTAGGGAGAAGCTTCCCAAGGACGAGCAC GTGAGTA
TTGGACAAGTGGACAAGTGTCGTATCCGTGGCAACGACAACGCAGCGACG
GAGGCAAGCAGCTGCGGGAGTGGTGCCAATGAAACACGCGTGTTGAGCTC
CGTCTGCGTCACCTTGCTGCTCTGAACGCTCCTGTGTGTTTCGTTTGTGC
CGAACCACCACACGGCGGAACGGCCATGTCCAAGTTTACGTTTCGGAGTT
CGGTTGCTGCACTGCTTGTCCTAGGTTGACCTGTAAGCCTGTAAGGACGA
TTGGACATTGACTACATTGACTACTGCTGTCCCACGAAGAGGAGGGTGCA
AGCTCTATCGTGTTGAACTGTCGAACAGGTTCTGTGGTGGCCCCTCACTT
ATGAGATCGAAGCTGTGGTTCACCCCACCATCGCTGATACATCCACACCC
TTTGCACACCCTGGTGGATGCAGCATTGTACCGGTACATGTACAGCACTA
TTCTAGGCCTCGATACTATAATAGGCCGCGAGAGCGGATTCAACTCTAAA
GTGTGCTCGGTATATTCAGCTCAACCTTGCTGCAGTGTTTCTCGGCCGTT
GTCTCAATCAAGTCTTCGCCGGGAGGAACACCTGTGTGCGTGCTTTTTAA
ATCCGTGCTTGCAGCTATCTGCTCGACTATGCCCCCTGTTGGGGTGCACG
GCATCCGGAAGCGGGCTTCTTCCGTCAACCAGATTGCTGGGACGGATAGA
CACCCAGCGGATAGCACTAGTCTAGACCATGTAGTTGAACAGGATATTTA
GCGTGCATTTTATGCGTAAGCAAATTTATTTAACACATGTGTTGTCGAGG
TCAGGCAAAGATTTGCGCAAACGAATGCGAATATTGTAGCACTCGCCGAC
ATCGTACCGAAAAAGTACTGTAGAACTGCTGTAGTCTCTGCCTCTCGCCT
TATGCATACAACTGCTGTTGTTTCAGGAGCGGGCGGCCTGTAGACCCTCT
CACGTGACTACCCTCGCCTCTCTTGTGTATGCGTTGTCCAATTTCTTGCA
CGTCCGAGACGGATATGTACCAGTCGGGAAAGGGGGGCTAGGGCTTGTTG
CCACCACGCCTGTTTTTCTTTCTCGAAACGTGTGTCTACTGCTCTGGTTC
CGTTGAGAAATCCAGCCTGTTTCCCACATGACACTGCTAATCCCAGGGTA
CGCGTTAGGGTCGGTCTACTACCGCTCTACATCTGACCCTTCCCTTCCAT
GCCGTGCGCCTTTGATGTTAATCGGATGGGACAGGTGGTGGTGGCCATCA
GCGGGTTCTACGTGGGTTTGTACGTGGTGTGCAAGGGAATCTCGGCGCTC
TTCTCGTCCCCAAAGAAGAAGGAAGTCG GTGAGAAGTCACGGCAAGAAGG
GACACTCACTATTTTACATACAAGTTCGAGTGTTTACCCACCCGTAGGGA
TCAATCAGTCTGTCTTGTGACACGCAAGCTTCTGGGCCGTATTCAACACA
TCTGGGGGCTCAGACAATCAAAATTGTTCAGCGGGGCATATCTCGTATCT
CGATACGTTGATGCGGTGGTTCAAGATGGAAAGGCTGGTGGACCTTGAGC
ATGAACGCGTGGAGTGTACCTCTTTCTTGCGCGCTCCGCAACTGGCATAG
GAACATACGTTCGTTTGCACGTTTACCCGTCGGGGTGATTGAGCGAAGAC
GTTGCGCGAGAGGACAGCTAGCCGTACGGACAGCTAGCATACTCCTTGCT
GATGTCGATAGGGGCAGGCAGTCTTTGCATGGTGGAGACGCCTTCGAGGC
AGATGTCGGCGGGACAGCTCTAGGCTTAGTTTACTCTCCCATTTAGAGTT
GCTCTTACAAGTAATGCCAAGAATCAAAGCGAAGGGTGGCGGGTGTGCCC
CCCCCCCCTTCGCTTCGAAGTACCAGCTCGCAGCTGATGATGACGGCGCA
GGTGTTCTATTTTCAGGTTGCAGAGATTCACCCCAGCCCCGATAAACATT
TAATCGAAAACAAGCATCGTGTGTGTTTCCCTCGAACGTACGTAGCTAGG
CTAGCACCAAGAGGGGTATTTGCATACGCTTCCGAGTGATCCTCCCGAGC
CGCACCTCCACCGCATGCCCTCGTCTCGTCTCATGCATGTCGGAAAACTT
TGTTGTCGACGCCTCGAGAAAATTTCAACCCACAAAACGCATCTTTTTAC
AAACGTCTCGTAATTTCCCTCCCGCTCCTGCCCCCCGCCCTCCGCACCCC
ATCTATGCCCGCTCCTCGCCTATGCACGCGCGCGCTACTCCCTCGCAGCT
GCCCCCGTCGTCGCTTCATCCGCGACGAGTTCCGACATCCCCGAAGGTTA
CGAGGACAACTTCTGGCAATGGCTCGAGGGCGCGGGGAACATGGAGAAGT
ACCTCGCGACAATCGACAAGGCTCAGTAGAGGCAGAGACAAAGGGGGGGG
TGCGCGTGCTTATCGGTTGAGTTCCTTGTCCTGCGGGGAGCTTTCGTTGG
GCGATGGCTGGAGTGCGGTGCAAGACCGAGCACTGTGCTACGCGAATATA
AAGTGTATCGCTGCGCGAGGAGAAGAGGGGCGTGGTGGCGGGGGGTTGCC
GGCGGGCATGCAACGGATGGAAACAGCGTGTGTCCGGGCGGCGGGGGGGG
TGAGGTGGCAGCAGTGA AGGTTTTTGAGCAGACCTGAGAGAAACCTCACA
AACAACAAGACGGCGCTTTGGTTTGCAGTTTAGGCTGGAATGGAGCGAGC
GGATGGCGTTGATCTTCTGTAGGGTCGTACGGTAGGCTTTCGGCCTACCG
ATGCTGGCGTTGTACAAGCAACGAGTGAGCGTCGCGATGACTTAAAGGCG
TGTTGTCTTCGGGACGCCCGAAGTGCGTTCATGCGGACAGAAGACATGAG
TATATTTTTTTGAGATGGGGAAAATTGCGGGGTGTCGAGACTCACACATG
TGTCGCATGTCGATACCGCTGCATCATTGCCGGCGGCAGACCAACATAAA
ACACGCAGACCCGGCCCGTGTGTTGCGTCCTTGCTGTACTGCCGTCCGAC
CAGCCGGTTCTGTACATGCGAAATGGCGCCCTTTGAACGTGCGGCCCACA
ACTCAATGAAGTTGGAGTCCCCATCCGGAAGACTCCCTGTACTTCATTGA
GGCTACATTGATGCGGACGCTCCCTCAC back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig985:9321..12598-
>mRNA_E_fasciculatus_S2_contig985.17856.1 ID=mRNA_E_fasciculatus_S2_contig985.17856.1|Name=mRNA_E_fasciculatus_S2_contig985.17856.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=606bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:9321..12598- (Ectocarpus fasciculatus EfasUO2) back to top