mRNA_E_fasciculatus_S2_contig985.17856.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig985.17856.1
Unique NamemRNA_E_fasciculatus_S2_contig985.17856.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig985.17856.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNR4_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 1.080e-66
Identity = 113/121 (93.39%), Postives = 118/121 (97.52%), Query Frame = 3 
Query:    3 SKAAAPARAVASRAAPAAPKRGMAGGAAPKYTGWEAQVREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKKKEVAAPVVASSATSSDIPEGYEDNFWQWLEGAGNMEKYLATIDKAQ 365
            SKAAAPARAVASRAAPA PKRGMAGGAAP+YTGWEAQ+REKLPKDEHVVVAISGFYVGLYV+ KGISALFSSP+K EVAAPVVASSATSSDIP+GYEDNFWQWLEGAGNMEKYLATIDKAQ
Sbjct:    8 SKAAAPARAVASRAAPAVPKRGMAGGAAPEYTGWEAQIREKLPKDEHVVVAISGFYVGLYVLVKGISALFSSPEK-EVAAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ 127
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BLAST of mRNA_E_fasciculatus_S2_contig985.17856.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IDD0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.960e-7
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 3 
Query:   57 PKRGMAGGAAPKYTGWEAQ--VREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKKKEVAAPVVASSATSSDIPEGYEDNFWQWLEGAGNMEKYLATID 356
            PKR   GGAA +Y        VR+ LP+D HVV+AI G Y  LY++ K    LFS  K          +S +SS +    ++ F +W+   GN+EKY   ++
Sbjct:   28 PKR-FGGGAAVEYEPGSPDYIVRQYLPEDRHVVMAICGGYFSLYLLSK----LFSGGKXXXXXXXXXPASTSSSGVKSMADEGFAEWIAVDGNIEKYFKAVE 124
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BLAST of mRNA_E_fasciculatus_S2_contig985.17856.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UII2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.640e-6
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 3 
Query:   57 PKRGMAGGAAPKYTGWEAQ--VREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKKKEV---AAPVVASSATSSDIPEGYEDNFWQWLEGAGNMEKYLATID 356
            PKR  AGGA  +Y        VR+ LP D+ +VVAI   Y G+Y+    +S LFS   KKE    AAP  A++  +  +    ++ F  W+   GN EKYL + +
Sbjct:   39 PKR-FAGGAPTEYAPGSLDYIVRQYLPHDKQIVVAIVSGYFGIYL----LSTLFSGGSKKEETAEAAPAPAAAPAAGGVLSMEDEGFGDWIMQEGNFEKYLNSFE 138
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig985.17856.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.080e-6693.39protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Hypothetical6.960e-736.27protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical1.640e-637.14protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig985contigE_fasciculatus_S2_contig985:9321..12598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1118
Hectar predicted targeting categoryother localisation
Exons3
Cds size606
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842628.3433561-UTR-E_fasciculatus_S2_contig985:9320..98311696842628.3433561-UTR-E_fasciculatus_S2_contig985:9320..9831Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig985 9321..9831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842628.3581502-CDS-E_fasciculatus_S2_contig985:9831..102001696842628.3581502-CDS-E_fasciculatus_S2_contig985:9831..10200Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 9832..10200 -
1696842628.368783-CDS-E_fasciculatus_S2_contig985:11120..112141696842628.368783-CDS-E_fasciculatus_S2_contig985:11120..11214Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 11121..11214 -
1696842628.3783422-CDS-E_fasciculatus_S2_contig985:12455..125981696842628.3783422-CDS-E_fasciculatus_S2_contig985:12455..12598Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 12456..12598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig985.17856.1prot_E_fasciculatus_S2_contig985.17856.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig985 9832..12598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig985.17856.1

>prot_E_fasciculatus_S2_contig985.17856.1 ID=prot_E_fasciculatus_S2_contig985.17856.1|Name=mRNA_E_fasciculatus_S2_contig985.17856.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=202bp
CRRLRHPQGQSRRERRRQPQSAGWRVEQLRSTRAGRPRLGRSFPRTSTWW
WPSAGSTWVCTWCARESRRSSRPQRRRKSLPPSSLHPRRVPTSPKVTRTT
SGNGSRARGTWRSTSRQSTRLSRGRDKGGGARAYRLSSLSCGELSLGDGW
SAVQDRALCYANIKCIAARGEEGRGGGGLPAGMQRMETACVRAAGGVRWQ
Q*
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mRNA from alignment at E_fasciculatus_S2_contig985:9321..12598-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig985.17856.1 ID=mRNA_E_fasciculatus_S2_contig985.17856.1|Name=mRNA_E_fasciculatus_S2_contig985.17856.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3278bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:9321..12598- (Ectocarpus fasciculatus EfasUO2)
TGTCGAAGGCTGCGGCACCCGCAAGGGCAGTCGCGTCGCGAGCGGCGCCG
GCAGCCCCAAAGCGCGGGATGGCGGGTGGAGCAGCTCCGAAGTACACGGG
CTGGGAGGCCCAGGTTAGGGAGAAGCTTCCCAAGGACGAGCACGTGAGTA
TTGGACAAGTGGACAAGTGTCGTATCCGTGGCAACGACAACGCAGCGACG
GAGGCAAGCAGCTGCGGGAGTGGTGCCAATGAAACACGCGTGTTGAGCTC
CGTCTGCGTCACCTTGCTGCTCTGAACGCTCCTGTGTGTTTCGTTTGTGC
CGAACCACCACACGGCGGAACGGCCATGTCCAAGTTTACGTTTCGGAGTT
CGGTTGCTGCACTGCTTGTCCTAGGTTGACCTGTAAGCCTGTAAGGACGA
TTGGACATTGACTACATTGACTACTGCTGTCCCACGAAGAGGAGGGTGCA
AGCTCTATCGTGTTGAACTGTCGAACAGGTTCTGTGGTGGCCCCTCACTT
ATGAGATCGAAGCTGTGGTTCACCCCACCATCGCTGATACATCCACACCC
TTTGCACACCCTGGTGGATGCAGCATTGTACCGGTACATGTACAGCACTA
TTCTAGGCCTCGATACTATAATAGGCCGCGAGAGCGGATTCAACTCTAAA
GTGTGCTCGGTATATTCAGCTCAACCTTGCTGCAGTGTTTCTCGGCCGTT
GTCTCAATCAAGTCTTCGCCGGGAGGAACACCTGTGTGCGTGCTTTTTAA
ATCCGTGCTTGCAGCTATCTGCTCGACTATGCCCCCTGTTGGGGTGCACG
GCATCCGGAAGCGGGCTTCTTCCGTCAACCAGATTGCTGGGACGGATAGA
CACCCAGCGGATAGCACTAGTCTAGACCATGTAGTTGAACAGGATATTTA
GCGTGCATTTTATGCGTAAGCAAATTTATTTAACACATGTGTTGTCGAGG
TCAGGCAAAGATTTGCGCAAACGAATGCGAATATTGTAGCACTCGCCGAC
ATCGTACCGAAAAAGTACTGTAGAACTGCTGTAGTCTCTGCCTCTCGCCT
TATGCATACAACTGCTGTTGTTTCAGGAGCGGGCGGCCTGTAGACCCTCT
CACGTGACTACCCTCGCCTCTCTTGTGTATGCGTTGTCCAATTTCTTGCA
CGTCCGAGACGGATATGTACCAGTCGGGAAAGGGGGGCTAGGGCTTGTTG
CCACCACGCCTGTTTTTCTTTCTCGAAACGTGTGTCTACTGCTCTGGTTC
CGTTGAGAAATCCAGCCTGTTTCCCACATGACACTGCTAATCCCAGGGTA
CGCGTTAGGGTCGGTCTACTACCGCTCTACATCTGACCCTTCCCTTCCAT
GCCGTGCGCCTTTGATGTTAATCGGATGGGACAGGTGGTGGTGGCCATCA
GCGGGTTCTACGTGGGTTTGTACGTGGTGTGCAAGGGAATCTCGGCGCTC
TTCTCGTCCCCAAAGAAGAAGGAAGTCGGTGAGAAGTCACGGCAAGAAGG
GACACTCACTATTTTACATACAAGTTCGAGTGTTTACCCACCCGTAGGGA
TCAATCAGTCTGTCTTGTGACACGCAAGCTTCTGGGCCGTATTCAACACA
TCTGGGGGCTCAGACAATCAAAATTGTTCAGCGGGGCATATCTCGTATCT
CGATACGTTGATGCGGTGGTTCAAGATGGAAAGGCTGGTGGACCTTGAGC
ATGAACGCGTGGAGTGTACCTCTTTCTTGCGCGCTCCGCAACTGGCATAG
GAACATACGTTCGTTTGCACGTTTACCCGTCGGGGTGATTGAGCGAAGAC
GTTGCGCGAGAGGACAGCTAGCCGTACGGACAGCTAGCATACTCCTTGCT
GATGTCGATAGGGGCAGGCAGTCTTTGCATGGTGGAGACGCCTTCGAGGC
AGATGTCGGCGGGACAGCTCTAGGCTTAGTTTACTCTCCCATTTAGAGTT
GCTCTTACAAGTAATGCCAAGAATCAAAGCGAAGGGTGGCGGGTGTGCCC
CCCCCCCCTTCGCTTCGAAGTACCAGCTCGCAGCTGATGATGACGGCGCA
GGTGTTCTATTTTCAGGTTGCAGAGATTCACCCCAGCCCCGATAAACATT
TAATCGAAAACAAGCATCGTGTGTGTTTCCCTCGAACGTACGTAGCTAGG
CTAGCACCAAGAGGGGTATTTGCATACGCTTCCGAGTGATCCTCCCGAGC
CGCACCTCCACCGCATGCCCTCGTCTCGTCTCATGCATGTCGGAAAACTT
TGTTGTCGACGCCTCGAGAAAATTTCAACCCACAAAACGCATCTTTTTAC
AAACGTCTCGTAATTTCCCTCCCGCTCCTGCCCCCCGCCCTCCGCACCCC
ATCTATGCCCGCTCCTCGCCTATGCACGCGCGCGCTACTCCCTCGCAGCT
GCCCCCGTCGTCGCTTCATCCGCGACGAGTTCCGACATCCCCGAAGGTTA
CGAGGACAACTTCTGGCAATGGCTCGAGGGCGCGGGGAACATGGAGAAGT
ACCTCGCGACAATCGACAAGGCTCAGTAGAGGCAGAGACAAAGGGGGGGG
TGCGCGTGCTTATCGGTTGAGTTCCTTGTCCTGCGGGGAGCTTTCGTTGG
GCGATGGCTGGAGTGCGGTGCAAGACCGAGCACTGTGCTACGCGAATATA
AAGTGTATCGCTGCGCGAGGAGAAGAGGGGCGTGGTGGCGGGGGGTTGCC
GGCGGGCATGCAACGGATGGAAACAGCGTGTGTCCGGGCGGCGGGGGGGG
TGAGGTGGCAGCAGTGAAGGTTTTTGAGCAGACCTGAGAGAAACCTCACA
AACAACAAGACGGCGCTTTGGTTTGCAGTTTAGGCTGGAATGGAGCGAGC
GGATGGCGTTGATCTTCTGTAGGGTCGTACGGTAGGCTTTCGGCCTACCG
ATGCTGGCGTTGTACAAGCAACGAGTGAGCGTCGCGATGACTTAAAGGCG
TGTTGTCTTCGGGACGCCCGAAGTGCGTTCATGCGGACAGAAGACATGAG
TATATTTTTTTGAGATGGGGAAAATTGCGGGGTGTCGAGACTCACACATG
TGTCGCATGTCGATACCGCTGCATCATTGCCGGCGGCAGACCAACATAAA
ACACGCAGACCCGGCCCGTGTGTTGCGTCCTTGCTGTACTGCCGTCCGAC
CAGCCGGTTCTGTACATGCGAAATGGCGCCCTTTGAACGTGCGGCCCACA
ACTCAATGAAGTTGGAGTCCCCATCCGGAAGACTCCCTGTACTTCATTGA
GGCTACATTGATGCGGACGCTCCCTCAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig985:9321..12598-

>mRNA_E_fasciculatus_S2_contig985.17856.1 ID=mRNA_E_fasciculatus_S2_contig985.17856.1|Name=mRNA_E_fasciculatus_S2_contig985.17856.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=606bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:9321..12598- (Ectocarpus fasciculatus EfasUO2)
TGTCGAAGGCTGCGGCACCCGCAAGGGCAGTCGCGTCGCGAGCGGCGCCG
GCAGCCCCAAAGCGCGGGATGGCGGGTGGAGCAGCTCCGAAGTACACGGG
CTGGGAGGCCCAGGTTAGGGAGAAGCTTCCCAAGGACGAGCACGTGGTGG
TGGCCATCAGCGGGTTCTACGTGGGTTTGTACGTGGTGTGCAAGGGAATC
TCGGCGCTCTTCTCGTCCCCAAAGAAGAAGGAAGTCGCTGCCCCCGTCGT
CGCTTCATCCGCGACGAGTTCCGACATCCCCGAAGGTTACGAGGACAACT
TCTGGCAATGGCTCGAGGGCGCGGGGAACATGGAGAAGTACCTCGCGACA
ATCGACAAGGCTCAGTAGAGGCAGAGACAAAGGGGGGGGTGCGCGTGCTT
ATCGGTTGAGTTCCTTGTCCTGCGGGGAGCTTTCGTTGGGCGATGGCTGG
AGTGCGGTGCAAGACCGAGCACTGTGCTACGCGAATATAAAGTGTATCGC
TGCGCGAGGAGAAGAGGGGCGTGGTGGCGGGGGGTTGCCGGCGGGCATGC
AACGGATGGAAACAGCGTGTGTCCGGGCGGCGGGGGGGGTGAGGTGGCAG
CAGTGA
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