mRNA_E_fasciculatus_S2_contig9849.17853.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: ArfGAP (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY2_ECTSI) HSP 1 Score: 198 bits (504), Expect = 1.240e-55 Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 2 Query: 356 GGGARMWSLRLSECAALGCLAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYFSDKMDR 655
GGGA MWSLRLSECAALG LAGAVEALAHGGDPRWTNP+DQHRTALHC AATGDLGCCEF+IQNGA VLSLDERQ SPLDIACLGNQVPAVEYFSDKMDR
Sbjct: 662 GGGAEMWSLRLSECAALGDLAGAVEALAHGGDPRWTNPEDQHRTALHCAAATGDLGCCEFLIQNGADVLSLDERQCSPLDIACLGNQVPAVEYFSDKMDR 761
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G725_ECTSI) HSP 1 Score: 177 bits (450), Expect = 3.500e-54 Identity = 83/95 (87.37%), Postives = 86/95 (90.53%), Query Frame = 2 Query: 371 MWSLRLSECAALGCLAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYFSDKMDR 655
MWSLRLSECAALG LAGAVEALAHGGDPRWTNPDDQHRTALH AATG+LGCC+F+IQNGA V SLDERQ SPLDI CLGNQVPAVEYF DKM R
Sbjct: 1 MWSLRLSECAALGDLAGAVEALAHGGDPRWTNPDDQHRTALHFAAATGELGCCDFLIQNGADVFSLDERQCSPLDIPCLGNQVPAVEYFLDKMGR 95
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZP4_ECTSI) HSP 1 Score: 106 bits (265), Expect = 1.610e-26 Identity = 50/59 (84.75%), Postives = 52/59 (88.14%), Query Frame = 2 Query: 479 HRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYFSDKMDR 655
HRTALHC AATGDLGCCE +IQN A V SLD RQ SPLDIACLGNQVPAVE+FSDKMDR
Sbjct: 15 HRTALHCAAATGDLGCCESIIQNIADVFSLDGRQCSPLDIACLGNQVPAVEHFSDKMDR 73
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Topoisom_bac (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIP5_9PHAE) HSP 1 Score: 100 bits (250), Expect = 4.510e-23 Identity = 66/90 (73.33%), Postives = 71/90 (78.89%), Query Frame = 1 Query: 175 RGPRAGLWRAGAGAPREG*EETRVAQREAVAAAAAIAGDLAGAAAG*TGTRWAGATASRRGGWGEDVVVATVGVRGVGVSRGSRRGVGPR 444
RGPRAGLWRAGAGA R+G +E+ VA +EAVAAAAAI GDLA A G TGTR AGA A+R GG G VVVATVGVRG G S GSRRG GPR
Sbjct: 84 RGPRAGLWRAGAGARRKGEKESTVAPKEAVAAAAAITGDLARTAEGWTGTRRAGAAAAR-GGAGRGVVVATVGVRGGGGSGGSRRGFGPR 172
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7N2_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 1.580e-19 Identity = 50/64 (78.12%), Postives = 52/64 (81.25%), Query Frame = 3 Query: 36 LRGMGTERLPRIPWE----QREGWEKPPANSPGDLKRSYIQAKYVWEGFVEGSTSRLVAGGGWG 215
LR +G R I WE QREGWEKP ANSPGDLKRSYIQAKYVW+GFVEGSTSRLVAGGGWG
Sbjct: 624 LREVGNARSNAI-WEHSLAQREGWEKPTANSPGDLKRSYIQAKYVWKGFVEGSTSRLVAGGGWG 686
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG56_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.960e-8 Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 2 Query: 413 LAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYFSDKMD 652
L G ++AL HG + W NPDD+ R + A G + EF++ NGA + +LD + + +D+A + V VE+ KM+
Sbjct: 857 LQGCLDALIHGAEIDWKNPDDRSRCPMAAAAEKGYVDVIEFLLLNGADINNLDHEECTVMDVAAMAGNVEVVEFLHAKME 936
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Arf-GAP (with coiled-coil, ANK repeat and PH domain-containing protein n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2WS19_CHACN) HSP 1 Score: 60.8 bits (146), Expect = 3.840e-7 Identity = 35/90 (38.89%), Postives = 44/90 (48.89%), Query Frame = 2 Query: 413 LAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYFSDKMDR*ANKTWPDI 682
L EALAHG W NP+++ RT L G L CEF++QNGA V D + R PL A + V F + R AN+ DI
Sbjct: 673 LPDMAEALAHGAQVNWVNPEEEKRTPLIMAVHGGSLVTCEFLLQNGASVNQQDAQGRGPLHHATILGHTGQVCLF---LKRGANQNATDI 759
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Arf-GAP (with coiled-coil, ANK repeat and PH domain-containing protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8PQN1_ORNAN) HSP 1 Score: 58.9 bits (141), Expect = 1.670e-6 Identity = 35/91 (38.46%), Postives = 43/91 (47.25%), Query Frame = 2 Query: 365 ARMWSLRLSECAALGCLAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYF 637
A+ LRL A L EALAHG D W NP++ T+L G L CEF++QNGA V D + R PL A + V F
Sbjct: 560 AKSSGLRLYRAAFEKNLPVMAEALAHGADVNWANPEENKATSLIQAVLGGSLVTCEFLLQNGASVNQRDVKGRGPLHHATVLGHTGQVCLF 650
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Arf-GAP (with coiled-coil, ANK repeat and PH domain-containing protein n=2 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8NEA7_ORNAN) HSP 1 Score: 58.2 bits (139), Expect = 3.010e-6 Identity = 34/86 (39.53%), Postives = 41/86 (47.67%), Query Frame = 2 Query: 380 LRLSECAALGCLAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYF 637
LRL A L EALAHG D W NP++ T+L G L CEF++QNGA V D + R PL A + V F
Sbjct: 549 LRLYRAAFEKNLPVMAEALAHGADVNWANPEENKATSLIQAVLGGSLVTCEFLLQNGASVNQRDVKGRGPLHHATVLGHTGQVCLF 634
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Match: Arf-GAP (with coiled-coil, ANK repeat and PH domain-containing protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8PCU0_ORNAN) HSP 1 Score: 58.2 bits (139), Expect = 3.010e-6 Identity = 34/86 (39.53%), Postives = 41/86 (47.67%), Query Frame = 2 Query: 380 LRLSECAALGCLAGAVEALAHGGDPRWTNPDDQHRTALHCDAATGDLGCCEFMIQNGAHVLSLDERQRSPLDIACLGNQVPAVEYF 637
LRL A L EALAHG D W NP++ T+L G L CEF++QNGA V D + R PL A + V F
Sbjct: 553 LRLYRAAFEKNLPVMAEALAHGADVNWANPEENKATSLIQAVLGGSLVTCEFLLQNGASVNQRDVKGRGPLHHATVLGHTGQVCLF 638 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9849.17853.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9849.17853.1 >prot_E_fasciculatus_S2_contig9849.17853.1 ID=prot_E_fasciculatus_S2_contig9849.17853.1|Name=mRNA_E_fasciculatus_S2_contig9849.17853.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=165bp MGTERLPRIPWEQREGWEKPPANSPGDLKRSYIQAKYVWEGFVEGSTSRLback to top mRNA from alignment at E_fasciculatus_S2_contig9849:248..5207+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9849.17853.1 ID=mRNA_E_fasciculatus_S2_contig9849.17853.1|Name=mRNA_E_fasciculatus_S2_contig9849.17853.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4960bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9849:248..5207+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9849:248..5207+ >mRNA_E_fasciculatus_S2_contig9849.17853.1 ID=mRNA_E_fasciculatus_S2_contig9849.17853.1|Name=mRNA_E_fasciculatus_S2_contig9849.17853.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=495bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9849:248..5207+ (Ectocarpus fasciculatus EfasUO2)back to top |